By organism › Archaea

Observationobservedoriginal resultmeasured

Claim · model-written summary

Crenarchaeota was the dominant archaeal phylum (97.3%).

Taxon: archaeaArchaeae1
Outcome: Crenarchaeotae1
Value: 97.3%e1
Qualifier: in archaeae1

Verbatim

e1
“Crenarchaeota (97.3%) in archaea”
✓ located verbatim in the source · abstract, characters 1127–1159

Title

Relationship Between Plant Communities and Soil Microbial Diversity and Community Structure in the Desert Steppe of Inner Mongolia

Houpu Chen; Changjia Li; Shuai Wang; et al. Land Degradation and Development 2025. doi:10.1002/ldr.70026

Other claims from this paper (11)

Associationobservedoriginal resultmeasured

Claim · model-written summary

Environmental factors explained 66.1% of archaea community structure variation.

Taxon: archaeaArchaeae1
Treatment: Environmental factorse1
Outcome: community structure variationse1
Value: 66.1%e1

Not reportedDirection

Verbatim

e1
“Environmental factors explained varying degrees of community structure variations, with the highest explanatory power for archaea (66.1%), followed by bacteria (49.0%) and fungi (32.8%)”
✓ located verbatim in the source · abstract, characters 1541–1726

Title

Relationship Between Plant Communities and Soil Microbial Diversity and Community Structure in the Desert Steppe of Inner Mongolia

Houpu Chen; Changjia Li; Shuai Wang; et al. Land Degradation and Development 2025. doi:10.1002/ldr.70026

Other claims from this paper (11)

Observationobservedoriginal resultmeasured

Claim · model-written summary

The community included 10 archaeal species.

Taxon: archaeaArchaeae0
Outcome: species of archaeae0
Value: 10e0

Verbatim

e0
“including 382 species of bacteria, 10 species of archaea, and 3 species of eukaryotes.”
✓ located verbatim in the source · abstract, characters 655–741

Title

Dynamics of Root-Associated Microbiomes in Ratooning Sugarcane: Insights from Shotgun Metagenomic

Sulasti Sulastri; Lina Herliana; Nur Alfi Saryanah; et al. Malaysian Journal of Fundamental and Applied Sciences 2025. doi:10.11113/mjfas.v21n3.4301

Other claims from this paper (14)

Observation Root-associated microbiomes varied between ratoon and plant cane and across sites.
Association pH, total organic carbon and nitrogen influenced community structure.
Observation Across four sites, 395 microbial species were identified.
Observation The community included 382 bacterial species.
Observation The community included 3 eukaryotic species.
Observation Paraburkholderia caribensis was the most abundant species in Dompu ratoon plants at 40%.
Observation Rhizobium pusense dominated Dompu plant cane at 16%.
Observation Rhodanobacter sp. DHG33 was predominant in Madiun ratoon plants at 20%.
Observation Paraburkholderia sp. SOS3 was predominant in Madiun ratoon plants at 16%.
Mechanism The identified bacterial species may contribute to plant growth in ratooning plantations.
Observation The fungal community declined during the ratooning cycle.
Observation The fungal community increased at later stages, possibly indicating greater stability in mature ratoon crops.
Observation Bacteria were more abundant in Dompu Regency ratoon plants.
Observation Archaea were more abundant in Madiun Regency ratoon plants.

Observationobservedoriginal resultmeasured

Claim · model-written summary

Archaea were more abundant in Madiun Regency ratoon plants.

Taxon: archaeaArchaeae0
Outcome: archaeae0
Direction: more abundante0
Setting: Madiun Regencye0

Verbatim

e0
“The community structure varied, with bacteria more abundant in Dompu Regency's ratoon plants and archaea in Madiun Regency's ratoon plants.”
✓ located verbatim in the source · abstract, characters 1302–1441

Title

Dynamics of Root-Associated Microbiomes in Ratooning Sugarcane: Insights from Shotgun Metagenomic

Sulasti Sulastri; Lina Herliana; Nur Alfi Saryanah; et al. Malaysian Journal of Fundamental and Applied Sciences 2025. doi:10.11113/mjfas.v21n3.4301

Other claims from this paper (14)

Observation Root-associated microbiomes varied between ratoon and plant cane and across sites.
Association pH, total organic carbon and nitrogen influenced community structure.
Observation Across four sites, 395 microbial species were identified.
Observation The community included 382 bacterial species.
Observation The community included 10 archaeal species.
Observation The community included 3 eukaryotic species.
Observation Paraburkholderia caribensis was the most abundant species in Dompu ratoon plants at 40%.
Observation Rhizobium pusense dominated Dompu plant cane at 16%.
Observation Rhodanobacter sp. DHG33 was predominant in Madiun ratoon plants at 20%.
Observation Paraburkholderia sp. SOS3 was predominant in Madiun ratoon plants at 16%.
Mechanism The identified bacterial species may contribute to plant growth in ratooning plantations.
Observation The fungal community declined during the ratooning cycle.
Observation The fungal community increased at later stages, possibly indicating greater stability in mature ratoon crops.
Observation Bacteria were more abundant in Dompu Regency ratoon plants.

Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Nitrososphaeraceae relative abundance decreased in the iron mining area.

Taxon: NitrososphaeraceaeNitrososphaeraceaee0
Treatment: iron mininge0
Outcome: relative abundancee0
Direction: decreasede0
Setting: iron mining areae0

Not reportedComparator

Verbatim

e0
“It is noteworthy that in the iron mining area, the relative abundance of Sphingomonas and Nitrososphaeraceae in the soil has decreased.”
✓ located verbatim in the source · abstract, characters 368–503

Title

Mining Activities in Iron Ore Areas Have Altered the Diversity and Functional Structure of Rhizosphere Bacterial Communities in Three Crops

Yanping Xu; Hao Ren; Ziping Zou; et al. Microorganisms 2025. doi:10.3390/microorganisms13122728

Other claims from this paper (5)

Intervention effect Sphingomonas relative abundance decreased in the iron mining area.
Intervention effect Mining increased Streptomyces relative abundance in rhizosphere soil.
Association Sphingomonas abundance correlated significantly positively with soil organic carbon.
Association Streptomyces correlated significantly positively with soil titanium and pH.
Association Streptomyces correlated negatively with iron and lead content.

Observationobservedoriginal resultmeasured

Claim · model-written summary

Thaumarchaeota dominated all tested soils at 92.46-98.01%.

Taxon: ThaumarchaeotaNitrososphaerotae0
Outcome: dominant archaeal phylume0
Value: 92.46-98.01%e0

Not reportedDirection

Verbatim

e0
“Thaumarchaeota was the dominant archaeal phylum in all soils tested (92.46-98.01%)”
✓ located verbatim in the source · abstract, characters 697–779

Title

Deciphering the archaeal communities in tree rhizosphere of the Qinghai-Tibetan plateau

Mengjun Zhang; Liwei Chai; Muke Huang; et al. BMC Microbiology 2020. doi:10.1186/s12866-020-01913-5

Other claims from this paper (8)

Observationobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

Thaumarchaeota relative abundance was significantly higher in rhizospheres than bulk soil.

Taxon: ThaumarchaeotaNitrososphaerotae0
Outcome: relative abundancee0
Direction: highere0
Comparator: bulk soile0

Verbatim

e0
“Thaumarchaeota was the dominant archaeal phylum in all soils tested (92.46-98.01%), while its relative abundance in rhizospheres were significantly higher than that in bulk soil.”
✓ located verbatim in the source · abstract, characters 697–875

Title

Deciphering the archaeal communities in tree rhizosphere of the Qinghai-Tibetan plateau

Mengjun Zhang; Liwei Chai; Muke Huang; et al. BMC Microbiology 2020. doi:10.1186/s12866-020-01913-5

Other claims from this paper (8)

Observationobservedoriginal resultmeasured

Claim · model-written summary

UPF0261 and TBST domains are generally encoded by different genes in bacteria, archaea and fungi.

Taxon: bacteria, archaea and fungiBacteria Archaea Fungie1
Gene: UPF0261- and TBST-domain-containing proteinse0
Outcome: encoded by different genese0

Verbatim

e0
“UPF0261- and TBST-domain-containing proteins are generally encoded by different genes in these linages”
✓ located verbatim in the source · abstract, characters 589–691

e1
“bacteria, archaea and fungi”
✓ located verbatim in the source · abstract, characters 560–587

Title

Origin of the plant Tm-1-like gene via two independent horizontal transfer events and one gene fusion event

Zefeng Yang; Li Liu; Huimin Fang; et al. Scientific Reports 2016. doi:10.1038/srep33691

Other claims from this paper (4)

Observationauthor interpretationoriginal resultmeasured

Claim · model-written summary

A beta-barrel in otherwise unrelated archaeal and bacterial epimerases exemplifies structural convergence.

Taxon: Archaea and bacteriaBacteria Archaeae0
Gene: epimerasese0
Outcome: structural convergencee0

Verbatim

e0
“The structural convergence can be exemplified by formation of a beta-barrel inside extremely conserved structures of the otherwise unrelated epimerases from Archaea and bacteria.”
✓ located verbatim in the source · abstract, characters 1372–1550

Title

Evolution of seed storage globulins and cupin superfamily

A. D. Shutov; I. A. Kakhovskaya Molecular Biology 2011. doi:10.1134/s0026893311030162

Other claims from this paper (4)

Archaea 9 claims

9 claims