Paper · 2011 · Physiologia Plantarum

Genome‐wide transcriptional changes and defence‐related chemical profiling of rice in response to infestation by the rice striped stem borer Chilo suppressalis

Guoxin Zhou; Xia Wang; Feng Yan; et al.

7
claims
11
verbatim quotes
62
citations
3
research areas
—
Not open access

Abstract

How rice defends itself against pathogen infection is well documented, but little is known about how it defends itself against herbivore attack. We measured changes in the transcriptome and chemical profile of rice when the plant is infested by the striped stem borer (SSB) Chilo suppressalis. Infestation by SSBs resulted in changes in the expression levels of 4545 rice genes; this number accounts for about 8% of the genome and is made up of 18 functional groups with broad functions. The largest group comprised genes involved in metabolism, followed by cellular transport, transcription and cellular signaling. Infestation by SSBs modulated many genes responsible for the biosynthesis of plant hormones and plant signaling. Jasmonic acid (JA), salicylic acid (SA) and ethylene were the major hormones that shaped the SSB-induced defence responses of rice. Many secondary signal transduction components, such as those involved in Ca²⁺ signaling and G-protein signaling, receptor and non-receptor protein kinases, and transcription factors were involved in the SSB-induced responses of rice. Photosynthesis and ATP synthesis from photophosphorylation were restricted by SSB feeding. In addition, SSB infestation induced the accumulation of defence compounds, including trypsin proteinase inhibitors (TrypPIs) and volatile organic compounds. These results demonstrate that SSB-induced defences required rice to reconfigure a wide variety of its metabolic, physiological and biochemical processes.

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Claims 7

Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Stem borer infestation changed expression of 4545 rice genes, about 8% of the genome.

Treatment
Infestation by SSBse0
Interactor
SSBse0pest
Outcome
expression levels of 4545 rice genese0
Direction
changese0
Value
4545 rice genese0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Infestation by SSBs resulted in changes in the expression levels of 4545 rice genes; this number accounts for about 8% of the genome”

✓ located verbatim in the source · abstract, characters 294–426 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

The largest functional group of responsive genes involved metabolism, followed by transport, transcription and signaling.

Outcome
The largest group comprised genes involved in metabolisme0
Direction
largeste0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“The largest group comprised genes involved in metabolism, followed by cellular transport, transcription and cellular signaling”

✓ located verbatim in the source · abstract, characters 488–614 · show in text ↑
t0

“of rice in response”

✓ located verbatim in the source · title, characters 75–94 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Stem borer infestation modulated rice genes for hormone biosynthesis and signaling.

Treatment
Infestation by SSBse0
Interactor
SSBse0pest
Outcome
genes responsible for the biosynthesis of plant hormones and plant signalinge0
Direction
modulatede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Infestation by SSBs modulated many genes responsible for the biosynthesis of plant hormones and plant signaling”

✓ located verbatim in the source · abstract, characters 616–727 · show in text ↑
t0

“of rice in response”

✓ located verbatim in the source · title, characters 75–94 · show in text ↑
Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

Jasmonic acid, salicylic acid and ethylene were major hormones shaping rice defence responses.

Interactor
SSBe0pest
Compound
Jasmonic acid (JA), salicylic acid (SA) and ethylenee0
Outcome
SSB-induced defence responsese0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Jasmonic acid (JA), salicylic acid (SA) and ethylene were the major hormones that shaped the SSB-induced defence responses of rice”

✓ located verbatim in the source · abstract, characters 729–859 · show in text ↑
Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

Secondary signaling components were involved in the rice response to stem borer infestation.

Interactor
SSBe0pest
Outcome
SSB-induced responsese0
Qualifier
secondary signal transduction componentse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Many secondary signal transduction components, such as those involved in Ca²⁺ signaling and G-protein signaling, receptor and non-receptor protein kinases, and transcription factors were involved in the SSB-induced responses of rice”

✓ located verbatim in the source · abstract, characters 861–1093 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Stem borer feeding restricted rice photosynthesis and photophosphorylation ATP synthesis.

Treatment
SSB feedinge0
Interactor
SSBe0pest
Outcome
Photosynthesis and ATP synthesis from photophosphorylatione0
Direction
restrictede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Photosynthesis and ATP synthesis from photophosphorylation were restricted by SSB feeding”

✓ located verbatim in the source · abstract, characters 1095–1184 · show in text ↑
t0

“of rice in response”

✓ located verbatim in the source · title, characters 75–94 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Stem borer infestation induced accumulation of rice defence compounds.

Treatment
SSB infestatione0
Interactor
SSBe0pest
Outcome
accumulation of defence compounds, including trypsin proteinase inhibitors (TrypPIs) and volatile organic compoundse0
Direction
inducede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“SSB infestation induced the accumulation of defence compounds, including trypsin proteinase inhibitors (TrypPIs) and volatile organic compounds”

✓ located verbatim in the source · abstract, characters 1199–1342 · show in text ↑
t0

“of rice in response”

✓ located verbatim in the source · title, characters 75–94 · show in text ↑

infection · physiology: photosynthesis · Oryza sativa (rice)Positive and negative results

15 papers: 6 positive, 9 negative or no effect

8 papers in the same direction as this paper · 6 in the opposite direction

  1. positive
  2. positive
  3. positive

11 papers more in this group

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infection · disease · Oryza sativa (rice)Positive and negative results

28 papers: 15 positive, 13 negative or no effect

14 papers in the same direction as this paper · 13 in the opposite direction

  1. no effect
  2. negative
  3. negative

24 papers more in this group

See all 28 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.