Paper · 2015 · Frontiers in Plant Science

A large-scale genetic screen for mutants with altered salicylic acid accumulation in Arabidopsis

Yezhang Ding; Danjela Shaholli; Zhonglin Mou

13
claims
34
verbatim quotes
27
citations
2
research areas
✓
Open access · cc-by

Abstract

Salicylic acid (SA) is a key defense signal molecule against biotrophic and hemibiotrophic pathogens in plants, but how SA is synthesized in plant cells still remains elusive. Identification of new components involved in pathogen-induced SA accumulation would help address this question. To this end, we performed a large-scale genetic screen for mutants with altered SA accumulation during pathogen infection in Arabidopsis using a bacterial biosensor Acinetobacter sp. ADPWH_lux-based SA quantification method. A total of 35,000 M2 plants in the npr1-3 mutant background have been individually analyzed for the bacterial pathogen Pseudomonas syringae pv. maculicola (Psm) ES4326-induced SA accumulation. Among the mutants isolated, 19 had SA levels lower than npr1 (sln) and two exhibited increased SA accumulation in npr1 (isn). Complementation tests revealed that seven of the sln mutants are new alleles of eds5/sid1, two are sid2/eds16 alleles, one is allelic to pad4, and the remaining seven sln and two isn mutants are new non-allelic SA accumulation mutants. Interestingly, a large group of mutants (in the npr1-3 background), in which Psm ES4326-induced SA levels were similar to those in the wild-type Columbia plants, were identified, suggesting that the signaling network fine-tuning pathogen-induced SA accumulation is complex. We further characterized the sln1 single mutant and found that Psm ES4326-induced defense responses were compromised in this mutant. These defense response defects could be rescued by exogenous SA, suggesting that SLN1 functions upstream of SA. The sln1 mutation was mapped to a region on the north arm of chromosome I, which contains no known genes regulating pathogen-induced SA accumulation, indicating that SLN1 likely encodes a new regulator of SA biosynthesis. Thus, the new sln and isn mutants identified in this genetic screen are valuable for dissecting the molecular mechanisms underlying pathogen-induced SA accumulation in plants.

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Claims 13

Observationobservedoriginal resultmeasured

Claim · model-written summary

Nineteen mutants had lower SA levels than npr1.

Taxon
ArabidopsisArabidopsist0
Material
slne0
Interactor
Pseudomonas syringae pv. maculicola (Psm) ES4326Pseudomonas syringae pv. maculicolae7pathogen
Outcome
SA levelse0
Direction
lowere0
Value
19e0
Comparator
npr1e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 85–96 · show in text ↑
e7

“Pseudomonas syringae pv. maculicola (Psm) ES4326”

✓ located verbatim in the source · abstract, characters 632–680 · show in text ↑
e0

“19 had SA levels lower than npr1 (sln)”

✓ located verbatim in the source · abstract, characters 734–772 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Two mutants showed increased SA accumulation in npr1.

Taxon
ArabidopsisArabidopsist0
Material
isne0
Interactor
Pseudomonas syringae pv. maculicola (Psm) ES4326Pseudomonas syringae pv. maculicolae7pathogen
Outcome
SA accumulatione0
Direction
increasede0
Value
twoe0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 85–96 · show in text ↑
e7

“Pseudomonas syringae pv. maculicola (Psm) ES4326”

✓ located verbatim in the source · abstract, characters 632–680 · show in text ↑
e0

“two exhibited increased SA accumulation in npr1 (isn)”

✓ located verbatim in the source · abstract, characters 777–830 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Seven sln mutants were new eds5/sid1 alleles.

Taxon
ArabidopsisArabidopsist0
Material
sln mutantse0
Gene
eds5/sid1e0
Outcome
new alleles of eds5/sid1e0
Value
sevene0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 85–96 · show in text ↑
e0

“seven of the sln mutants are new alleles of eds5/sid1”

✓ located verbatim in the source · abstract, characters 868–921 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Two sln mutants were sid2/eds16 alleles.

Taxon
ArabidopsisArabidopsist0
Material
sln mutantse1
Gene
sid2/eds16e0
Outcome
sid2/eds16 allelese0
Value
twoe0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 85–96 · show in text ↑
e0

“two are sid2/eds16 alleles”

✓ located verbatim in the source · abstract, characters 923–949 · show in text ↑
e1

“sln mutants”

✓ located verbatim in the source · abstract, characters 881–892 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

One sln mutant was allelic to pad4.

Taxon
ArabidopsisArabidopsist0
Material
sln mutantse1
Gene
pad4e0
Outcome
allelic to pad4e0
Value
onee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 85–96 · show in text ↑
e0

“one is allelic to pad4”

✓ located verbatim in the source · abstract, characters 951–973 · show in text ↑
e1

“sln mutants”

✓ located verbatim in the source · abstract, characters 881–892 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Seven sln mutants were new non-allelic SA accumulation mutants.

Taxon
ArabidopsisArabidopsist0
Material
slne0
Outcome
new non-allelic SA accumulation mutantse0
Value
sevene0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 85–96 · show in text ↑
e0

“remaining seven sln and two isn mutants are new non-allelic SA accumulation mutants”

✓ located verbatim in the source · abstract, characters 983–1066 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Two isn mutants were new non-allelic SA accumulation mutants.

Taxon
ArabidopsisArabidopsist0
Material
isne0
Outcome
new non-allelic SA accumulation mutantse0
Value
twoe0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 85–96 · show in text ↑
e0

“remaining seven sln and two isn mutants are new non-allelic SA accumulation mutants”

✓ located verbatim in the source · abstract, characters 983–1066 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

A large mutant group had pathogen-induced SA levels similar to wild-type Columbia.

Taxon
ArabidopsisArabidopsist0
Interactor
Pseudomonas syringae pv. maculicola (Psm) ES4326Pseudomonas syringae pv. maculicolae7pathogen
Outcome
Psm ES4326-induced SA levelse0
Direction
similare0
Comparator
wild-type Columbia plantse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 85–96 · show in text ↑
e7

“Pseudomonas syringae pv. maculicola (Psm) ES4326”

✓ located verbatim in the source · abstract, characters 632–680 · show in text ↑
e0

“Psm ES4326-induced SA levels were similar to those in the wild-type Columbia plants”

✓ located verbatim in the source · abstract, characters 1145–1228 · show in text ↑
Observationobservedoriginal resultnegativemeasured

Claim · model-written summary

The sln1 mutant had compromised pathogen-induced defense responses.

Taxon
ArabidopsisArabidopsist0
Material
sln1 single mutante1
Interactor
Pseudomonas syringae pv. maculicola (Psm) ES4326Pseudomonas syringae pv. maculicolae7pathogen
Outcome
Psm ES4326-induced defense responsese0
Direction
compromisede0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 85–96 · show in text ↑
e7

“Pseudomonas syringae pv. maculicola (Psm) ES4326”

✓ located verbatim in the source · abstract, characters 632–680 · show in text ↑
e0

“Psm ES4326-induced defense responses were compromised in this mutant”

✓ located verbatim in the source · abstract, characters 1405–1473 · show in text ↑
e1

“sln1 single mutant”

✓ located verbatim in the source · abstract, characters 1371–1389 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Exogenous SA rescued the sln1 defense response defects.

Taxon
ArabidopsisArabidopsist0
Material
sln1 single mutante1
Treatment
exogenous SAe0
Outcome
defense response defectse0
Direction
rescuede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 85–96 · show in text ↑
e0

“These defense response defects could be rescued by exogenous SA”

✓ located verbatim in the source · abstract, characters 1475–1538 · show in text ↑
e1

“sln1 single mutant”

✓ located verbatim in the source · abstract, characters 1371–1389 · show in text ↑
Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

SLN1 was inferred to act upstream of SA.

Taxon
ArabidopsisArabidopsist0
Gene
SLN1e0
Outcome
functions upstream of SAe0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 85–96 · show in text ↑
e0

“suggesting that SLN1 functions upstream of SA”

✓ located verbatim in the source · abstract, characters 1540–1585 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

The sln1 mutation mapped to the north arm of chromosome I.

Taxon
ArabidopsisArabidopsist0
Gene
sln1e0
Outcome
mapped to a region on the north arm of chromosome Ie0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 85–96 · show in text ↑
e0

“The sln1 mutation was mapped to a region on the north arm of chromosome I”

✓ located verbatim in the source · abstract, characters 1587–1660 · show in text ↑
Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

SLN1 likely encodes a previously unknown regulator of SA biosynthesis.

Taxon
ArabidopsisArabidopsist0
Gene
SLN1e0
Outcome
regulator of SA biosynthesise0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 85–96 · show in text ↑
e0

“SLN1 likely encodes a new regulator of SA biosynthesis”

✓ located verbatim in the source · abstract, characters 1753–1807 · show in text ↑

salicylic acid · disease · ArabidopsisPositive and negative results

20 papers: 12 positive, 8 negative or no effect

11 papers in the same direction as this paper · 8 in the opposite direction

  1. positive
  2. positive
  3. negative

16 papers more in this group

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Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.