Paper · 1999 · Bioscience Biotechnology and Biochemistry

Molecular Cloning and Characterization of a cDNA for an Iron-Superoxide Dismutase in Rice (Oryza sativaL.)

Hironori KAMINAKA; Shigeto MORITA; Megumi TOKUMOTO; et al.

8
claims
13
verbatim quotes
53
citations
1
research areas
✓
Open access

Abstract

We have isolated a cDNA encoding Fe-SOD from rice (Oryza sativa L.). The deduced amino acid sequence consists of a polypeptide with 255 amino acids, including a putative transit peptide (40 a.a.) in amino-terminal residues. This sequence is similar to the known plant Fe-SODs but not classified in the group of known Fe-SODs. The metal analysis and SOD assays of the partial purified recombinant protein expressed in E. coli showed that this cDNA encodes an iron-containing SOD. However this SOD activity was not inhibited by the treatment with hydrogen peroxide, which was expected to inhibit known Fe-SOD activity. mRNA of rice Fe-SOD was detected in all vegetative tissues examined, being especially abundant in calli, and strongly increased by light induction. These results suggested that this cDNA encodes rice Fe-SOD, which is apparently distinct from known plant Fe-SODs.

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The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 8

Observationobservedoriginal resultmeasured

Claim · model-written summary

A rice cDNA encoding Fe-SOD was isolated.

Taxon
rice (Oryza sativa L.)Oryza sativae0
Gene
Fe-SODe0
Outcome
cDNA encoding Fe-SODe0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“We have isolated a cDNA encoding Fe-SOD from rice (Oryza sativa L.).”

✓ located verbatim in the source · abstract, characters 0–68 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

The deduced polypeptide has 255 amino acids.

Taxon
rice (Oryza sativa L.)Oryza sativat0
Outcome
polypeptidee0
Value
255 amino acidse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“The deduced amino acid sequence consists of a polypeptide with 255 amino acids”

✓ located verbatim in the source · abstract, characters 69–147 · show in text ↑
t0

“rice (Oryza sativaL.)”

✓ located after whitespace/quote normalisation · title, characters 85–106 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

The sequence includes a putative 40-amino-acid transit peptide.

Taxon
rice (Oryza sativa L.)Oryza sativat0
Outcome
putative transit peptidee0
Value
40 a.a.e0
Qualifier
amino-terminal residuese0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“including a putative transit peptide (40 a.a.) in amino-terminal residues”

✓ located verbatim in the source · abstract, characters 149–222 · show in text ↑
t0

“rice (Oryza sativaL.)”

✓ located after whitespace/quote normalisation · title, characters 85–106 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

The rice sequence resembles known plant Fe-SODs but is not classified with them.

Taxon
rice (Oryza sativa L.)Oryza sativat0
Outcome
similar to the known plant Fe-SODs but not classified in the group of known Fe-SODse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“This sequence is similar to the known plant Fe-SODs but not classified in the group of known Fe-SODs.”

✓ located verbatim in the source · abstract, characters 224–325 · show in text ↑
t0

“rice (Oryza sativaL.)”

✓ located after whitespace/quote normalisation · title, characters 85–106 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Metal analysis and activity assays identified the recombinant protein as an iron-containing SOD.

Taxon
rice (Oryza sativa L.)Oryza sativat0
Gene
SODe0
Outcome
iron-containing SODe0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“The metal analysis and SOD assays of the partial purified recombinant protein expressed in E. coli showed that this cDNA encodes an iron-containing SOD.”

✓ located verbatim in the source · abstract, characters 326–478 · show in text ↑
t0

“rice (Oryza sativaL.)”

✓ located after whitespace/quote normalisation · title, characters 85–106 · show in text ↑
Intervention effectobservedoriginal resultno effectmeasured

Claim · model-written summary

Hydrogen peroxide did not inhibit this SOD activity.

Taxon
rice (Oryza sativa L.)Oryza sativat0
Treatment
hydrogen peroxidee0
Outcome
SOD activitye0
Direction
not inhibitede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“this SOD activity was not inhibited by the treatment with hydrogen peroxide”

✓ located verbatim in the source · abstract, characters 487–562 · show in text ↑
t0

“rice (Oryza sativaL.)”

✓ located after whitespace/quote normalisation · title, characters 85–106 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Rice Fe-SOD mRNA was detected throughout the vegetative tissues examined and was especially abundant in calli.

Organ / stage
callie0
Gene
rice Fe-SODe0
Outcome
mRNA of rice Fe-SODe0
Direction
especially abundante0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“mRNA of rice Fe-SOD was detected in all vegetative tissues examined, being especially abundant in calli”

✓ located verbatim in the source · abstract, characters 617–720 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Light strongly increased rice Fe-SOD mRNA.

Treatment
light inductione0
Gene
rice Fe-SODe0
Outcome
mRNA of rice Fe-SODe0
Direction
increasede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“mRNA of rice Fe-SOD was detected in all vegetative tissues examined, being especially abundant in calli, and strongly increased by light induction”

✓ located verbatim in the source · abstract, characters 617–763 · show in text ↑

hydrogen peroxide · physiology: antioxidant enzymes · Oryza sativa (rice)Results differ

10 papers: 6 positive, 4 negative or no effect

3 papers in the same direction as this paper · 6 in the opposite direction

  1. positive
  2. positive
  3. positive

6 papers more in this group

See all 10 papers →

light · molecular: expression · Oryza sativa (rice)Positive and negative results

32 papers: 20 positive, 12 negative or no effect

19 papers in the same direction as this paper · 12 in the opposite direction

  1. no effect
  2. negative
  3. no effect

28 papers more in this group

See all 32 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.