Paper · 2011 · Annals of Microbiology

Physiological and molecular characterization of locally adapted Rhizobium strains of lentil (Lens culinaris Medik.) having restricted phage sensitivity

Sanjay Kumar Jaiswal; Sanjay Kumar Jaiswal; Banshi Dhar; et al.

10
claims
20
verbatim quotes
3
citations
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research areas
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Open access

Abstract

Indigenous rhizobia were isolated from root nodules of lentil plants collected from various agro-climatic regions of India. These isolates together with four standard lentil Rhizobium strains were screened for sensitivity against eight phages. Four strains, USDA 2431, BHULR 104, BHULR 113 and BHULR 115 having restricted sensitivity to lytic phages LRP-1, LRP-4, LRP-13 and LRP-15 respectively, were characterized for both physiological and molecular characters. All strains had a generation time of between 3.8 and 5.6 h in yeast extract–mannitol (YM) broth, and colonies on YM agar plates showed an acidic reaction. Compared to other strains, strain USDA 2431 grew poorly when sucrose was the sole carbon source and showed maximum growth in arabinose-containing medium. The intrinsic antibiotic resistance level in all strains was tested against seven antibiotics and found to be high with ampicillin and kanamycin (50–60 μg ml -1 ) but very low with neomycin (0.03 μg ml -1 ). With the exception of strain BHULR 113, all strains expressed ex planta nitrogenase activity, with strain USDA 2431 showing the maximum activity (26.8 nmol C 2 H 4 h -1 mg -1 protein) after 6 h of incubation. Genomic and phylogenetic relationships among the strains were examined by randomly amplified polymorphic DNA and 16S rRNA sequence analysis. Genetic distance varied from 0.09 to 0.23 among the strains, and the primer OPL-11 was found to be suitable for the discrimination of these strains. The 16S rRNA sequence analysis revealed 99–100% similarity with Rhizobium leguminosarum bv. viciae. These results clearly indicate that phage sensitivity is a useful marker for discriminating locally soil-adapted rhizobial strains forming effective nodules in lentil.

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Claims 10

Observationobservedoriginal resultmeasured

Claim · model-written summary

Strain USDA 2431 showed the maximum ex planta nitrogenase activity of 26.8 nmol C2H4 h-1 mg-1 protein after 6 h of incubation.

Taxon
lentilLens culinarist0
Material
USDA 2431e4
Outcome
ex planta nitrogenase activitye4
Value
26.8 nmol C 2 H 4 h -1 mg -1 proteine4
Qualifier
after 6 h of incubatione4

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Lens culinaris
Lens culinaris · TaxonUser:Justinc · CC BY-SA 2.5 · Wikimedia Commons ↗

Verbatim

t0

“Physiological and molecular characterization of locally adapted Rhizobium strains of lentil (Lens culinaris Medik.) having restricted phage sensitivity”

✓ located verbatim in the source · title, characters 0–151 · show in text ↑
e4

“With the exception of strain BHULR 113, all strains expressed ex planta nitrogenase activity, with strain USDA 2431 showing the maximum activity (26.8 nmol C 2 H 4 h -1 mg -1 protein) after 6 h of incubation”

✓ located verbatim in the source · abstract, characters 981–1188 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

All Rhizobium strains of lentil except BHULR 113 expressed ex planta nitrogenase activity.

Taxon
lentilLens culinarist0
Outcome
ex planta nitrogenase activitye4
Qualifier
With the exception of strain BHULR 113e4

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Lens culinaris
Lens culinaris · TaxonUser:Justinc · CC BY-SA 2.5 · Wikimedia Commons ↗

Verbatim

t0

“Physiological and molecular characterization of locally adapted Rhizobium strains of lentil (Lens culinaris Medik.) having restricted phage sensitivity”

✓ located verbatim in the source · title, characters 0–151 · show in text ↑
e4

“With the exception of strain BHULR 113, all strains expressed ex planta nitrogenase activity, with strain USDA 2431 showing the maximum activity (26.8 nmol C 2 H 4 h -1 mg -1 protein) after 6 h of incubation”

✓ located verbatim in the source · abstract, characters 981–1188 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Strain USDA 2431 grew poorly when sucrose was the sole carbon source compared with arabinose-containing medium.

Taxon
lentilLens culinarist0
Material
USDA 2431e3
Treatment
sucrose was the sole carbon sourcee3
Outcome
growthe3
Direction
poorlye3
Comparator
arabinose-containing mediume3

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Lens culinaris
Lens culinaris · TaxonUser:Justinc · CC BY-SA 2.5 · Wikimedia Commons ↗

Verbatim

t0

“Physiological and molecular characterization of locally adapted Rhizobium strains of lentil (Lens culinaris Medik.) having restricted phage sensitivity”

✓ located verbatim in the source · title, characters 0–151 · show in text ↑
e3

“strain USDA 2431 grew poorly when sucrose was the sole carbon source and showed maximum growth in arabinose-containing medium”

✓ located verbatim in the source · abstract, characters 646–771 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Strain USDA 2431 showed maximum growth in arabinose-containing medium compared with sucrose as sole carbon source.

Taxon
lentilLens culinarist0
Material
USDA 2431e3
Treatment
arabinose-containing mediume3
Outcome
growthe3
Direction
maximume3
Comparator
sucrose was the sole carbon sourcee3

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Lens culinaris
Lens culinaris · TaxonUser:Justinc · CC BY-SA 2.5 · Wikimedia Commons ↗

Verbatim

t0

“Physiological and molecular characterization of locally adapted Rhizobium strains of lentil (Lens culinaris Medik.) having restricted phage sensitivity”

✓ located verbatim in the source · title, characters 0–151 · show in text ↑
e3

“strain USDA 2431 grew poorly when sucrose was the sole carbon source and showed maximum growth in arabinose-containing medium”

✓ located verbatim in the source · abstract, characters 646–771 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

All strains of lentil Rhizobium had a generation time of 3.8 to 5.6 h in YM broth.

Taxon
lentilLens culinarist0
Material
All strainse2
Outcome
generation timee2
Value
between 3.8 and 5.6 he2
Setting
yeast extract–mannitol (YM) brothe2

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Lens culinaris
Lens culinaris · TaxonUser:Justinc · CC BY-SA 2.5 · Wikimedia Commons ↗

Verbatim

t0

“Physiological and molecular characterization of locally adapted Rhizobium strains of lentil (Lens culinaris Medik.) having restricted phage sensitivity”

✓ located verbatim in the source · title, characters 0–151 · show in text ↑
e2

“All strains had a generation time of between 3.8 and 5.6 h in yeast extract–mannitol (YM) broth”

✓ located verbatim in the source · abstract, characters 464–559 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Strains USDA 2431, BHULR 104, BHULR 113 and BHULR 115 of lentil Rhizobium had restricted sensitivity to lytic phages.

Taxon
lentilLens culinarist0
Material
USDA 2431, BHULR 104, BHULR 113 and BHULR 115e1
Outcome
sensitivity to lytic phagese1
Qualifier
restrictede1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Lens culinaris
Lens culinaris · TaxonUser:Justinc · CC BY-SA 2.5 · Wikimedia Commons ↗

Verbatim

t0

“Physiological and molecular characterization of locally adapted Rhizobium strains of lentil (Lens culinaris Medik.) having restricted phage sensitivity”

✓ located verbatim in the source · title, characters 0–151 · show in text ↑
e1

“Four strains, USDA 2431, BHULR 104, BHULR 113 and BHULR 115 having restricted sensitivity to lytic phages LRP-1, LRP-4, LRP-13 and LRP-15 respectively”

✓ located verbatim in the source · abstract, characters 244–394 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Genetic distance among the lentil Rhizobium strains varied from 0.09 to 0.23.

Taxon
lentilLens culinarist0
Outcome
Genetic distancee5
Value
0.09 to 0.23e5

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Lens culinaris
Lens culinaris · TaxonUser:Justinc · CC BY-SA 2.5 · Wikimedia Commons ↗

Verbatim

t0

“Physiological and molecular characterization of locally adapted Rhizobium strains of lentil (Lens culinaris Medik.) having restricted phage sensitivity”

✓ located verbatim in the source · title, characters 0–151 · show in text ↑
e5

“Genetic distance varied from 0.09 to 0.23 among the strains”

✓ located verbatim in the source · abstract, characters 1331–1390 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

The 16S rRNA sequences of the lentil Rhizobium strains showed 99–100% similarity with Rhizobium leguminosarum bv. viciae.

Taxon
lentilLens culinarist0
Outcome
similarity with Rhizobium leguminosarum bv. viciaee6
Value
99–100%e6

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Lens culinaris
Lens culinaris · TaxonUser:Justinc · CC BY-SA 2.5 · Wikimedia Commons ↗

Verbatim

t0

“Physiological and molecular characterization of locally adapted Rhizobium strains of lentil (Lens culinaris Medik.) having restricted phage sensitivity”

✓ located verbatim in the source · title, characters 0–151 · show in text ↑
e6

“The 16S rRNA sequence analysis revealed 99–100% similarity with Rhizobium leguminosarum bv. viciae”

✓ located verbatim in the source · abstract, characters 1480–1578 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Primer OPL-11 was suitable for discriminating the lentil Rhizobium strains.

Taxon
lentilLens culinarist0
Outcome
discrimination of these strainse7
Qualifier
the primer OPL-11 was found to be suitablee7

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Lens culinaris
Lens culinaris · TaxonUser:Justinc · CC BY-SA 2.5 · Wikimedia Commons ↗

Verbatim

t0

“Physiological and molecular characterization of locally adapted Rhizobium strains of lentil (Lens culinaris Medik.) having restricted phage sensitivity”

✓ located verbatim in the source · title, characters 0–151 · show in text ↑
e7

“the primer OPL-11 was found to be suitable for the discrimination of these strains”

✓ located verbatim in the source · abstract, characters 1396–1478 · show in text ↑
Recommendationauthor interpretationoriginal resultbasis n/a

Claim · model-written summary

Phage sensitivity is a useful marker for discriminating locally soil-adapted rhizobial strains of lentil.

Taxon
lentilLens culinarise1
Outcome
phage sensitivity is a useful markere1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Lens culinaris
Lens culinaris · TaxonUser:Justinc · CC BY-SA 2.5 · Wikimedia Commons ↗

Verbatim

t0

“Physiological and molecular characterization of locally adapted Rhizobium strains of lentil (Lens culinaris Medik.) having restricted phage sensitivity”

✓ located verbatim in the source · title, characters 0–151 · show in text ↑
e1

“These results clearly indicate that phage sensitivity is a useful marker for discriminating locally soil-adapted rhizobial strains forming effective nodules in lentil”

✓ located verbatim in the source · abstract, characters 1580–1746 · show in text ↑

in vitro · growth · Lens culinaris (lentil)Results agree

5 papers: 5 positive, 0 negative or no effect

4 papers in the same direction as this paper

  1. positive
  2. positive
  3. positive

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Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.