Paper · 2003 · Genes & Development

ICE1: a regulator of cold-induced transcriptome and freezing tolerance in Arabidopsis

Viswanathan Chinnusamy; Masaru Ohta; Siddhartha Kanrar; et al.

10
claims
19
verbatim quotes
1,701
citations
2
research areas
✓
Open access

Abstract

Cold temperatures trigger the expression of the CBF family of transcription factors, which in turn activate many downstream genes that confer chilling and freezing tolerance to plants. We report here the identification of ICE1 (inducer of CBF expression 1), an upstream transcription factor that regulates the transcription of CBF genes in the cold. An Arabidopsis ice1 mutant was isolated in a screen for mutations that impair cold-induced transcription of a CBF3 promoter-luciferase reporter gene. The ice1 mutation blocks the expression of CBF3 and decreases the expression of many genes downstream of CBFs, which leads to a significant reduction in plant chilling and freezing tolerance. ICE1 encodes a MYC-like bHLH transcriptional activator. ICE1 binds specifically to the MYC recognition sequences in the CBF3 promoter. ICE1 is expressed constitutively, and its overexpression in wild-type plants enhances the expression of the CBF regulon in the cold and improves freezing tolerance of the transgenic plants.

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Claims 10

Observationobservedoriginal resultmeasured

Claim · model-written summary

ICE1 was identified as an upstream regulator of cold-induced CBF transcription.

Taxon
ArabidopsisArabidopsist0
Gene
ICE1e0
Outcome
transcription of CBF genese0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“We report here the identification of ICE1 (inducer of CBF expression 1), an upstream transcription factor that regulates the transcription of CBF genes in the cold.”

✓ located verbatim in the source · abstract, characters 185–349 · show in text ↑
t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 74–85 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

An Arabidopsis ice1 mutant was isolated by impaired cold-induced CBF3 reporter transcription.

Taxon
ArabidopsisArabidopsise0
Material
ice1 mutante0
Gene
CBF3e0
Outcome
mutations that impair cold-induced transcription of a CBF3 promoter-luciferase reporter genee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“An Arabidopsis ice1 mutant was isolated in a screen for mutations that impair cold-induced transcription of a CBF3 promoter-luciferase reporter gene.”

✓ located verbatim in the source · abstract, characters 350–499 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

The ice1 mutation blocked CBF3 expression.

Taxon
ArabidopsisArabidopsist0
Treatment
ice1 mutatione0
Gene
CBF3e0
Outcome
expression of CBF3e0
Direction
blockse0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“The ice1 mutation blocks the expression of CBF3 and decreases the expression of many genes downstream of CBFs, which leads to a significant reduction in plant chilling and freezing tolerance.”

✓ located verbatim in the source · abstract, characters 500–691 · show in text ↑
t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 74–85 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

The ice1 mutation decreased expression of many genes downstream of CBFs.

Taxon
ArabidopsisArabidopsist0
Treatment
ice1 mutatione0
Outcome
expression of many genes downstream of CBFse0
Direction
decreasese0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“The ice1 mutation blocks the expression of CBF3 and decreases the expression of many genes downstream of CBFs, which leads to a significant reduction in plant chilling and freezing tolerance.”

✓ located verbatim in the source · abstract, characters 500–691 · show in text ↑
t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 74–85 · show in text ↑
Intervention effectobservedoriginal resultnegativesignificant (as stated)measured

Claim · model-written summary

The ice1 mutation significantly reduced chilling and freezing tolerance.

Taxon
ArabidopsisArabidopsist0
Treatment
ice1 mutatione0
Outcome
plant chilling and freezing tolerancee0
Direction
reductione0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“The ice1 mutation blocks the expression of CBF3 and decreases the expression of many genes downstream of CBFs, which leads to a significant reduction in plant chilling and freezing tolerance.”

✓ located verbatim in the source · abstract, characters 500–691 · show in text ↑
t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 74–85 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

ICE1 encodes a MYC-like bHLH transcriptional activator.

Taxon
ArabidopsisArabidopsist0
Gene
ICE1e0
Outcome
MYC-like bHLH transcriptional activatore0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“ICE1 encodes a MYC-like bHLH transcriptional activator.”

✓ located verbatim in the source · abstract, characters 692–747 · show in text ↑
t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 74–85 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

ICE1 specifically binds MYC recognition sequences in the CBF3 promoter.

Taxon
ArabidopsisArabidopsist0
Gene
ICE1e0
Outcome
binds specifically to the MYC recognition sequences in the CBF3 promotere0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“ICE1 binds specifically to the MYC recognition sequences in the CBF3 promoter.”

✓ located verbatim in the source · abstract, characters 748–826 · show in text ↑
t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 74–85 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

ICE1 was expressed constitutively.

Taxon
ArabidopsisArabidopsist0
Gene
ICE1e0
Outcome
expressed constitutivelye0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“ICE1 is expressed constitutively, and its overexpression in wild-type plants enhances the expression of the CBF regulon in the cold and improves freezing tolerance of the transgenic plants.”

✓ located verbatim in the source · abstract, characters 827–1016 · show in text ↑
t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 74–85 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

ICE1 overexpression increased expression of the CBF regulon in cold conditions.

Taxon
ArabidopsisArabidopsist0
Treatment
overexpression in wild-type plantse0
Gene
ICE1e0
Outcome
expression of the CBF regulone0
Direction
enhancese0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“ICE1 is expressed constitutively, and its overexpression in wild-type plants enhances the expression of the CBF regulon in the cold and improves freezing tolerance of the transgenic plants.”

✓ located verbatim in the source · abstract, characters 827–1016 · show in text ↑
t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 74–85 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

ICE1 overexpression improved freezing tolerance of transgenic plants.

Taxon
ArabidopsisArabidopsist0
Treatment
overexpression in wild-type plantse0
Gene
ICE1e0
Outcome
freezing tolerance of the transgenic plantse0
Direction
improvese0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“ICE1 is expressed constitutively, and its overexpression in wild-type plants enhances the expression of the CBF regulon in the cold and improves freezing tolerance of the transgenic plants.”

✓ located verbatim in the source · abstract, characters 827–1016 · show in text ↑
t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 74–85 · show in text ↑

loss of function · tolerance: abiotic · ArabidopsisPositive and negative results

40 papers: 22 positive, 18 negative or no effect

17 papers in the same direction as this paper · 22 in the opposite direction

  1. positive
  2. positive
  3. positive

36 papers more in this group

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Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.