Paper · 2007 · The Plant Cell

The Basic Helix-Loop-Helix Transcription Factor PIF5 Acts on Ethylene Biosynthesis and Phytochrome Signaling by Distinct Mechanisms

Rajnish Khanna; Yu Shen; Colleen M. Marion; et al.

12
claims
12
verbatim quotes
172
citations
3
research areas
✓
Open access

Abstract

PHYTOCHROME-INTERACTING FACTOR5 (PIF5), a basic helix-loop-helix transcription factor, interacts specifically with the photoactivated form of phytochrome B (phyB). Here, we report that dark-grown Arabidopsis thaliana seedlings overexpressing PIF5 (PIF5-OX) exhibit exaggerated apical hooks and short hypocotyls, reminiscent of the triple response induced by elevated ethylene levels, whereas pif5 mutants fail to maintain tight hooks like those of wild-type seedlings. Silver ions, an ethylene receptor blocker, rescued the triple-response phenotype, and we show that PIF5-OX seedlings express enhanced levels of key ethylene biosynthesis enzymes and produce elevated ethylene levels. Exposure of PIF5-OX seedlings to prolonged continuous red light (Rc) promotes hypocotyl elongation relative to dark controls, the reciprocal of the Rc-imposed hypocotyl inhibition displayed by wild-type seedlings. In contrast with this PIF5-OX hyposensitivity to Rc, pif5 mutant seedlings are hypersensitive relative to wild-type seedlings. We show that this contrast is due to reciprocal changes in phyB protein levels in prolonged Rc. Compared with wild-type seedlings, PIF5-OX seedlings have reduced, whereas pif5 mutants have increased, phyB (and phyC) levels in Rc. The phyB degradation in the overexpressors depends on a functional phyB binding motif in PIF5 and involves the 26S proteasome pathway. Our data thus indicate that overexpressed PIF5 causes altered ethylene levels, which promote the triple response in darkness, whereas in the light, the interaction of photoactivated phyB with PIF5 causes degradation of the photoreceptor protein. The evidence suggests that endogenous PIF5 negatively regulates phyB-imposed hypocotyl inhibition in prolonged Rc by reducing photoreceptor abundance, and thereby photosensory capacity, rather than functioning as a signaling intermediate.

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Claims 12

Observationobservedoriginal resultmeasured

Claim · model-written summary

Dark-grown PIF5-OX seedlings had exaggerated apical hooks.

Taxon
Arabidopsis thalianaArabidopsis thalianae0
Material
PIF5-OXe0
Gene
PIF5e0
Outcome
exaggerated apical hookse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis thaliana
Arabidopsis thaliana · TaxonOriginal uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“dark-grown Arabidopsis thaliana seedlings overexpressing PIF5 (PIF5-OX) exhibit exaggerated apical hooks and short hypocotyls”

✓ located verbatim in the source · abstract, characters 185–310 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Dark-grown PIF5-OX seedlings had short hypocotyls.

Taxon
Arabidopsis thalianaArabidopsis thalianae0
Material
PIF5-OXe0
Gene
PIF5e0
Outcome
short hypocotylse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis thaliana
Arabidopsis thaliana · TaxonOriginal uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“dark-grown Arabidopsis thaliana seedlings overexpressing PIF5 (PIF5-OX) exhibit exaggerated apical hooks and short hypocotyls”

✓ located verbatim in the source · abstract, characters 185–310 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

pif5 mutants failed to maintain tight hooks like wild-type seedlings.

Material
pif5 mutantse0
Outcome
fail to maintain tight hookse0
Comparator
wild-type seedlingse0

Not reportedTaxon

Verbatim

e0

“pif5 mutants fail to maintain tight hooks like those of wild-type seedlings.”

✓ located verbatim in the source · abstract, characters 392–468 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Silver ions rescued the triple-response phenotype.

Treatment
Silver ionse0
Outcome
triple-response phenotypee0
Direction
rescuede0

Not reportedTaxonComparator

Verbatim

e0

“Silver ions, an ethylene receptor blocker, rescued the triple-response phenotype”

✓ located verbatim in the source · abstract, characters 469–549 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

PIF5-OX seedlings had enhanced levels of ethylene biosynthesis enzymes.

Material
PIF5-OXe0
Outcome
levels of key ethylene biosynthesis enzymese0
Direction
enhancede0

Not reportedTaxon

Verbatim

e0

“PIF5-OX seedlings express enhanced levels of key ethylene biosynthesis enzymes and produce elevated ethylene levels.”

✓ located verbatim in the source · abstract, characters 568–684 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

PIF5-OX seedlings produced elevated ethylene levels.

Material
PIF5-OXe0
Outcome
ethylene levelse0
Direction
elevatede0

Not reportedTaxon

Verbatim

e0

“PIF5-OX seedlings express enhanced levels of key ethylene biosynthesis enzymes and produce elevated ethylene levels.”

✓ located verbatim in the source · abstract, characters 568–684 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Prolonged red light promoted hypocotyl elongation in PIF5-OX seedlings relative to dark controls.

Material
PIF5-OXe0
Treatment
prolonged continuous red light (Rc)e0
Outcome
hypocotyl elongatione0
Direction
promotese0
Comparator
dark controlse0

Not reportedTaxon

Verbatim

e0

“Exposure of PIF5-OX seedlings to prolonged continuous red light (Rc) promotes hypocotyl elongation relative to dark controls”

✓ located verbatim in the source · abstract, characters 685–809 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Red light inhibited wild-type hypocotyls.

Material
wild-type seedlingse0
Treatment
Rce0
Outcome
hypocotyl inhibitione0

Not reportedTaxonComparatorDirection

Verbatim

e0

“Rc-imposed hypocotyl inhibition displayed by wild-type seedlings”

✓ located verbatim in the source · abstract, characters 833–897 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

pif5 mutant seedlings were hypersensitive to red light relative to wild type.

Material
pif5 mutant seedlingse0
Outcome
hypersensitivee0
Comparator
wild-type seedlingse0

Not reportedTaxon

Verbatim

e0

“pif5 mutant seedlings are hypersensitive relative to wild-type seedlings.”

✓ located verbatim in the source · abstract, characters 952–1025 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

PIF5-OX seedlings had reduced phyB and phyC levels under red light.

Material
PIF5-OXe0
Gene
phyB (and phyC)e0
Outcome
phyB (and phyC) levelse0
Direction
reducede0

Not reportedTaxon

Verbatim

e0

“PIF5-OX seedlings have reduced, whereas pif5 mutants have increased, phyB (and phyC) levels in Rc.”

✓ located verbatim in the source · abstract, characters 1157–1255 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

pif5 mutants had increased phyB and phyC levels under red light.

Material
pif5 mutantse0
Gene
phyB (and phyC)e0
Outcome
phyB (and phyC) levelse0
Direction
increasede0

Not reportedTaxon

Verbatim

e0

“PIF5-OX seedlings have reduced, whereas pif5 mutants have increased, phyB (and phyC) levels in Rc.”

✓ located verbatim in the source · abstract, characters 1157–1255 · show in text ↑
Observationauthor interpretationoriginal resultmeasured

Claim · model-written summary

phyB degradation in PIF5 overexpressors depended on a functional PIF5 binding motif and involved the 26S proteasome.

Gene
PIF5e0
Outcome
phyB degradatione0
Qualifier
functional phyB binding motife0

Not reportedTaxon

Verbatim

e0

“The phyB degradation in the overexpressors depends on a functional phyB binding motif in PIF5 and involves the 26S proteasome pathway.”

✓ located verbatim in the source · abstract, characters 1256–1390 · show in text ↑

light · growth · Arabidopsis thaliana (thale cress)Results differ

44 papers: 30 positive, 14 negative or no effect

29 papers in the same direction as this paper · 14 in the opposite direction

  1. negative
  2. negative
  3. negative

40 papers more in this group

See all 44 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.