Paper · 2013 · Viruses

A Naturally Occurring Defective DNA Satellite Associated with a Monopartite Begomovirus: Evidence for Recombination between Alphasatellite and Betasatellite

Changjun Huang; Yan Xie; Liling Zhao; et al.

6
claims
10
verbatim quotes
22
citations
2
research areas
✓
Open access · cc-by

Abstract

Monopartite begomoviruses and their associated satellites form unique disease complexes that have emerged as a serious threat to agriculture worldwide. It is well known that frequent recombination contributes to the diversification and evolution of geminiviruses. In this study, we identified a novel defective satellite molecule (RecSat) in association with Tobacco leaf curl Yunnan virus (TbLCYNV) in a naturally infected tobacco plant. Sequence analysis showed that Recsat comprises 754 nucleotides in size and is a chimera involving alphasatellite and betasatellite sequences, containing both betasatellite-conserved region and alphasatellite stem-loop structure. Recombination analysis revealed that RecSat has arisen from three independent recombination events likely involving Tomato yellow leaf curl China betasatellite, Ageratum yellow vein China betasatellite and Tobacco curly shoot alphasatellite. Co-inoculation of RecSat with TbLCYNV induced symptoms indistinguishable from those induced by TbLCYNV alone in Nicotiana benthamiana. Southern blot hybridization showed that RecSat could be trans-replicated stably in N. benthamiana plants by TbLCYNV, and impaired the accumulation of helper virus and co-inoculated alphasatellite. Our results provide the first evidence for recombination between two distinct types of satellites among geminivirus complex and highlight recombination as a driving force for geminivirus evolution.

Abstract from the paper’s OpenAlex record; open copy licensed cc-by. Read at the source ↗

The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 6

Observationobservedoriginal resultmeasured

Claim · model-written summary

A novel defective RecSat satellite was found with Tobacco leaf curl Yunnan virus in infected tobacco.

Taxon
tobacco plantNicotiana tabacume0
Interactor
Tobacco leaf curl Yunnan virus (TbLCYNV)Tobacco leaf curl Yunnan viruse0pathogen
Outcome
novel defective satellite molecule (RecSat)e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana tabacum
Nicotiana tabacum · TaxonJom / Joachim Müllerchen · CC BY 2.5 · Wikimedia Commons ↗

Verbatim

e0

“we identified a novel defective satellite molecule (RecSat) in association with Tobacco leaf curl Yunnan virus (TbLCYNV) in a naturally infected tobacco plant.”

✓ located verbatim in the source · abstract, characters 279–438 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

RecSat was 754 nucleotides long and combined alpha- and betasatellite sequences and structures.

Taxon
tobacco plantNicotiana tabacume1
Outcome
chimera involving alphasatellite and betasatellite sequencese0
Value
754 nucleotidese0
Qualifier
betasatellite-conserved region and alphasatellite stem-loop structuree0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana tabacum
Nicotiana tabacum · TaxonJom / Joachim Müllerchen · CC BY 2.5 · Wikimedia Commons ↗

Verbatim

e0

“Recsat comprises 754 nucleotides in size and is a chimera involving alphasatellite and betasatellite sequences, containing both betasatellite-conserved region and alphasatellite stem-loop structure.”

✓ located verbatim in the source · abstract, characters 469–667 · show in text ↑
t0

“in a naturally infected tobacco plant”

✓ located verbatim in the source · abstract, characters 400–437 · show in text ↑
e1

“in a naturally infected tobacco plant”

✓ located verbatim in the source · abstract, characters 400–437 · show in text ↑
Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

RecSat likely arose through three independent recombination events involving three named satellites.

Taxon
tobacco plantNicotiana tabacume1
Outcome
RecSat has arisene0
Value
three independent recombination eventse0
Qualifier
likely involving Tomato yellow leaf curl China betasatellite, Ageratum yellow vein China betasatellite and Tobacco curly shoot alphasatellitee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana tabacum
Nicotiana tabacum · TaxonJom / Joachim Müllerchen · CC BY 2.5 · Wikimedia Commons ↗

Verbatim

e0

“RecSat has arisen from three independent recombination events likely involving Tomato yellow leaf curl China betasatellite, Ageratum yellow vein China betasatellite and Tobacco curly shoot alphasatellite.”

✓ located verbatim in the source · abstract, characters 705–909 · show in text ↑
t0

“in a naturally infected tobacco plant”

✓ located verbatim in the source · abstract, characters 400–437 · show in text ↑
e1

“in a naturally infected tobacco plant”

✓ located verbatim in the source · abstract, characters 400–437 · show in text ↑
Intervention effectobservedoriginal resultno effectmeasured

Claim · model-written summary

RecSat co-inoculation with TbLCYNV gave symptoms indistinguishable from virus alone.

Taxon
Nicotiana benthamianaNicotiana benthamianae0
Treatment
Co-inoculation of RecSat with TbLCYNVe0
Interactor
TbLCYNVe0pathogen
Outcome
symptomse0
Direction
indistinguishablee0
Comparator
TbLCYNV alonee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana benthamiana
Nicotiana benthamiana · TaxonCharles Andres · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Co-inoculation of RecSat with TbLCYNV induced symptoms indistinguishable from those induced by TbLCYNV alone in Nicotiana benthamiana.”

✓ located verbatim in the source · abstract, characters 910–1044 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

TbLCYNV stably trans-replicated RecSat in N. benthamiana.

Taxon
N. benthamianaNicotiana benthamianae0
Interactor
TbLCYNVe0pathogen
Outcome
RecSat could be trans-replicated stablye0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana benthamiana
Nicotiana benthamiana · TaxonCharles Andres · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“RecSat could be trans-replicated stably in N. benthamiana plants by TbLCYNV”

✓ located verbatim in the source · abstract, characters 1085–1160 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

RecSat impaired accumulation of helper virus and co-inoculated alphasatellite.

Taxon
N. benthamianaNicotiana benthamianae0
Treatment
RecSate0
Interactor
TbLCYNVe0pathogen
Outcome
accumulation of helper virus and co-inoculated alphasatellitee0
Direction
impairede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana benthamiana
Nicotiana benthamiana · TaxonCharles Andres · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“RecSat could be trans-replicated stably in N. benthamiana plants by TbLCYNV, and impaired the accumulation of helper virus and co-inoculated alphasatellite.”

✓ located verbatim in the source · abstract, characters 1085–1241 · show in text ↑

Nicotiana tabacum · disease · Nicotiana benthamianaPositive and negative results

4 papers: 1 positive, 3 negative or no effect

2 papers in the same direction as this paper · 1 reporting no difference from an alternative

  1. positive
  2. negative
  3. negative
See all 4 papers →

Yunnan orbivirus · disease · Nicotiana benthamianaResults agree

2 papers: 0 positive, 2 negative or no effect

1 paper in the same direction as this paper

  1. negative
See all 2 papers →

inoculation · disease · Nicotiana benthamianaPositive and negative results

40 papers: 8 positive, 32 negative or no effect

31 papers in the same direction as this paper · 8 reporting no difference from an alternative

  1. positive
  2. positive
  3. positive

36 papers more in this group

See all 40 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.