Paper · 2008 · Annals of Botany

Mechanisms associated with tolerance to flooding during germination and early seedling growth in rice (Oryza sativa)

Abdelbagi M. Ismail; Evangelina S. Ella; Georgina V. Vergara; et al.

16
claims
38
verbatim quotes
397
citations
2
research areas
✓
Open access

Abstract

BACKGROUND AND AIMS: Flooding slows seed germination, imposes fatalities and delays seedling establishment in direct-seeded rice. This study describes responses of contrasting rice genotypes subjected to flooding or low oxygen stress during germination and discusses the basis of tolerance shown by certain cultivars. METHODS: In one set of experiments, dry seeds were sown in soil and either watered normally or flooded with 10 cm of water. Seedling survival and shoot and root growth were assessed and seed portions of germinating seedlings were assayed for soluble sugars and starch concentrations. The whole germinating seedlings were assayed for amylase and peroxidase activities and for ethylene production. Activities of enzymes associated with anaerobic respiration were examined and gene expression was analysed separately with seeds germinating under different amounts of dissolved oxygen in dilute agar. KEY RESULTS: Flooding during germination reduced survival but to a lesser extent in tolerant genotypes. Starch concentration in germinating seeds decreased while sugar concentration increased under flooding, but more so in tolerant genotypes. Amylase activity correlated positively with elongation (r = 0.85 for shoot and 0.83 for root length) and with plant survival (r = 0.92). Tolerant genotypes had higher amylase activity and higher RAmy3D gene expression. Ethylene was not detected in seeds within 2 d after sowing, but increased thereafter, with a greater increase in tolerant genotypes starting 3 d after sowing. Peroxidase activity was higher in germinating seeds of sensitive genotypes and correlated negatively with survival. CONCLUSIONS: Under low oxygen stress, tolerant genotypes germinate, grow faster and more seedlings survive. They maintain their ability to use stored starch reserves through higher amylase activity and anaerobic respiration, have higher rates of ethylene production and lower peroxidase activity as germinating seeds and as seedlings. Relevance of these traits to tolerance of flooding during germination and early growth is discussed.

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Claims 16

Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Flooding reduced survival, less strongly in tolerant genotypes.

Material
tolerant genotypese0
Treatment
Flooding during germinatione0
Outcome
survivale0
Direction
reducede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Flooding during germination reduced survival but to a lesser extent in tolerant genotypes”

✓ located verbatim in the source · abstract, characters 928–1017 · show in text ↑
t0

“rice”

✓ located verbatim in the source · title, characters 97–101 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Flooding decreased seed starch concentration, more in tolerant genotypes.

Material
tolerant genotypese0
Organ / stage
germinating seedse0
Treatment
floodinge0
Outcome
Starch concentratione0
Direction
decreasede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Starch concentration in germinating seeds decreased while sugar concentration increased under flooding, but more so in tolerant genotypes”

✓ located verbatim in the source · abstract, characters 1019–1156 · show in text ↑
t0

“rice”

✓ located verbatim in the source · title, characters 97–101 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Flooding increased seed sugar concentration, more in tolerant genotypes.

Material
tolerant genotypese0
Treatment
floodinge0
Outcome
sugar concentratione0
Direction
increasede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“sugar concentration increased under flooding, but more so in tolerant genotypes”

✓ located verbatim in the source · abstract, characters 1077–1156 · show in text ↑
t0

“rice”

✓ located verbatim in the source · title, characters 97–101 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Amylase activity correlated positively with shoot elongation at r = 0.85.

Gene
Amylasee0
Outcome
elongatione0
Direction
positivelye0
Value
r = 0.85e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Amylase activity correlated positively with elongation (r = 0.85 for shoot”

✓ located verbatim in the source · abstract, characters 1158–1232 · show in text ↑
t0

“rice”

✓ located verbatim in the source · title, characters 97–101 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Amylase activity correlated positively with root elongation at r = 0.83.

Gene
Amylaset1
Outcome
root lengthe0
Direction
positivelyt1
Value
0.83e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“0.83 for root length) and with plant survival”

✓ located verbatim in the source · abstract, characters 1237–1282 · show in text ↑
t0

“rice”

✓ located verbatim in the source · title, characters 97–101 · show in text ↑
t1

“Amylase activity correlated positively with elongation”

✓ located verbatim in the source · abstract, characters 1158–1212 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Amylase activity correlated positively with plant survival at r = 0.92.

Gene
Amylaset1
Outcome
plant survivale0
Direction
positivelyt1
Value
r = 0.92e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“and with plant survival (r = 0.92)”

✓ located verbatim in the source · abstract, characters 1259–1293 · show in text ↑
t0

“rice”

✓ located verbatim in the source · title, characters 97–101 · show in text ↑
t1

“Amylase activity correlated positively with elongation”

✓ located verbatim in the source · abstract, characters 1158–1212 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Tolerant genotypes had higher amylase activity.

Material
Tolerant genotypese0
Outcome
amylase activitye0
Direction
highere0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Tolerant genotypes had higher amylase activity”

✓ located verbatim in the source · abstract, characters 1295–1341 · show in text ↑
t0

“rice”

✓ located verbatim in the source · title, characters 97–101 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Tolerant genotypes had higher RAmy3D expression.

Material
Tolerant genotypese0
Gene
RAmy3De0
Outcome
RAmy3D gene expressione0
Direction
highere0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Tolerant genotypes had higher amylase activity and higher RAmy3D gene expression”

✓ located verbatim in the source · abstract, characters 1295–1375 · show in text ↑
t0

“rice”

✓ located verbatim in the source · title, characters 97–101 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Ethylene was undetected during the first two days.

Organ / stage
seedse0
Outcome
Ethylene was not detectede0
Qualifier
within 2 d after sowinge0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Ethylene was not detected in seeds within 2 d after sowing”

✓ located verbatim in the source · abstract, characters 1377–1435 · show in text ↑
t0

“rice”

✓ located verbatim in the source · title, characters 97–101 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Ethylene increased later, more in tolerant genotypes from day three.

Material
tolerant genotypese0
Outcome
Ethylenee1
Direction
greater increasee0
Qualifier
starting 3 d after sowinge0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“increased thereafter, with a greater increase in tolerant genotypes starting 3 d after sowing”

✓ located verbatim in the source · abstract, characters 1441–1534 · show in text ↑
t0

“rice”

✓ located verbatim in the source · title, characters 97–101 · show in text ↑
t1

“Amylase activity correlated positively with elongation”

✓ located verbatim in the source · abstract, characters 1158–1212 · show in text ↑
e1

“Ethylene was not detected in seeds within 2 d after sowing”

✓ located verbatim in the source · abstract, characters 1377–1435 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Sensitive genotypes had higher seed peroxidase activity.

Material
sensitive genotypese0
Organ / stage
germinating seedse0
Outcome
Peroxidase activitye0
Direction
highere0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Peroxidase activity was higher in germinating seeds of sensitive genotypes”

✓ located verbatim in the source · abstract, characters 1536–1610 · show in text ↑
t0

“rice”

✓ located verbatim in the source · title, characters 97–101 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Peroxidase activity correlated negatively with survival.

Gene
Peroxidasee1
Outcome
survivale0
Direction
negativelye0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“correlated negatively with survival”

✓ located verbatim in the source · abstract, characters 1615–1650 · show in text ↑
t0

“rice”

✓ located verbatim in the source · title, characters 97–101 · show in text ↑
t1

“Amylase activity correlated positively with elongation”

✓ located verbatim in the source · abstract, characters 1158–1212 · show in text ↑
e1

“Peroxidase activity was higher in germinating seeds of sensitive genotypes”

✓ located verbatim in the source · abstract, characters 1536–1610 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Under low oxygen, tolerant genotypes germinated.

Material
tolerant genotypese0
Treatment
low oxygen stresse0
Outcome
germinatee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Under low oxygen stress, tolerant genotypes germinate”

✓ located verbatim in the source · abstract, characters 1665–1718 · show in text ↑
t0

“rice”

✓ located verbatim in the source · title, characters 97–101 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Under low oxygen, tolerant genotypes grew faster.

Material
tolerant genotypese0
Outcome
grow fastere0
Direction
fastere0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“tolerant genotypes germinate, grow faster”

✓ located verbatim in the source · abstract, characters 1690–1731 · show in text ↑
t0

“rice”

✓ located verbatim in the source · title, characters 97–101 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Under low oxygen, more tolerant seedlings survived.

Outcome
seedlings survivee0
Direction
moree0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“more seedlings survive”

✓ located verbatim in the source · abstract, characters 1736–1758 · show in text ↑
t0

“rice”

✓ located verbatim in the source · title, characters 97–101 · show in text ↑
Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

Tolerant genotypes maintained starch use through higher amylase and anaerobic respiration.

Gene
amylasee0
Outcome
ability to use stored starch reservese0
Qualifier
anaerobic respiratione0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“They maintain their ability to use stored starch reserves through higher amylase activity and anaerobic respiration”

✓ located verbatim in the source · abstract, characters 1760–1875 · show in text ↑
t0

“rice”

✓ located verbatim in the source · title, characters 97–101 · show in text ↑

processing · survival · Oryza sativa (rice)Positive and negative results

2 papers: 1 positive, 1 negative or no effect

1 in the opposite direction

  1. positive
See all 2 papers →

flooding · survival · Oryza sativa (rice)Positive and negative results

12 papers: 7 positive, 5 negative or no effect

4 papers in the same direction as this paper · 7 in the opposite direction

  1. positive
  2. positive
  3. positive

8 papers more in this group

See all 12 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.