Paper · 2001 · Canadian Journal of Microbiology

Isolation and 16S rRNA sequence analysis of the beneficial bacteria from the rhizosphere of rice

Samina Mehnaz; M Sajjad Mirza; Jacqueline Haurat; et al.

14
claims
23
verbatim quotes
143
citations
3
research areas
—
Not open access

Abstract

The present study deals with the isolation of plant growth promoting rhizobacteria (PGPR) from rice (variety NIAB IRRI-9) and the beneficial effects of these inoculants on two Basmati rice varieties. Nitrogen-fixing activity (acetylene-reduction activity) was detected in the roots and submerged shoots of field-grown rice variety NIAB IRRI-9. Estimation of the population size of diazotrophic bacteria by ARA-based MPN (acetylene reduction assay-based most probable number) in roots and shoots indicated about 10(5)-10(6) counts/g dry weight at panicle initiation and grain filling stages. Four bacterial isolates from rice roots and shoots were obtained in pure culture which produced phytohormone indoleacetic acid (IAA) in the growth medium. Among these, three isolates S1, S4, and R3 reduced acetylene to ethylene in nitrogen-free semi-solid medium. Morphological and physiological characteristics of the isolates indicated that three nitrogen-fixing isolates S1, S4, and R3 belonged to the genus Enterobacter, while the non-fixing isolate R8 belonged to the genus Aeromonas. 16S rRNA sequence of one isolate from root (R8) and one isolate from shoot (S1) was obtained which confirmed identification of the isolates as Aeromonas veronii and Enterobacter cloacae, respectively. The 1517-nucleotide-long sequence of the isolate R8 showed 99% similarity with Aeromonas veronii (accession No. AF099023) while partial 16S rRNA sequence (two stretches of total 1271 nucleotide length) of S1 showed 97% similarity with the sequence of Enterobacter cloacae (accession No. AJ251469). The seedlings of two rice varieties Basmati 385 and Super Basmati were inoculated with the four bacterial isolates from rice and one Azospirillum brasilense strain Wb3, which was isolated from wheat. In the rice variety Basmati 385, maximum increase in root area and plant biomass was obtained in plants inoculated with Enterobacter S1 and Azospirillum Wb3, whereas in the rice variety Super Basmati, inoculation with Enterobacter R3 resulted in maximum increase of root area and plant biomass. Nitrogen fixation was quantified by using 15N isotopic dilution method. Maximum fixation was observed in Basmati 385 with the inoculants Azospirillum Wb3 and Enterobacter S1 where nearly 46% and 41% of the nitrogen was derived from atmosphere (%Ndfa), respectively. In general, higher nitrogen fixation was observed in variety Basmati 385 than in Super Basmati, and different bacterial strains were found more effective as inoculants for the rice varieties Basmati 385 and Super Basmati.

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Claims 14

Observationobservedoriginal resultpositivemeasured

Claim · model-written summary

Nitrogen fixing activity was detected in roots and submerged shoots of field grown NIAB IRRI-9 rice.

Material
NIAB IRRI-9e0
Organ / stage
roots and submerged shootse0
Outcome
Nitrogen-fixing activitye0
Setting
field-growne0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Nitrogen-fixing activity (acetylene-reduction activity) was detected in the roots and submerged shoots of field-grown rice variety NIAB IRRI-9.”

✓ located verbatim in the source · abstract, characters 200–343 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Diazotrophic bacterial populations in rice roots and shoots were about 10(5)-10(6) counts/g dry weight.

Organ / stage
roots and shootse0
Outcome
counts/g dry weighte0
Value
10(5)-10(6) counts/g dry weighte0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“in roots and shoots indicated about 10(5)-10(6) counts/g dry weight at panicle initiation and grain filling stages.”

✓ located verbatim in the source · abstract, characters 475–590 · show in text ↑
e1

“field-grown rice variety NIAB IRRI-9”

✓ located verbatim in the source · abstract, characters 306–342 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Four bacterial isolates from rice roots and shoots produced IAA in culture.

Interactor
bacterial isolatese0symbiont
Outcome
produced phytohormone indoleacetic acid (IAA)e0
Value
Foure0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Four bacterial isolates from rice roots and shoots were obtained in pure culture which produced phytohormone indoleacetic acid (IAA) in the growth medium.”

✓ located verbatim in the source · abstract, characters 591–745 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Isolates S1, S4 and R3 reduced acetylene to ethylene in nitrogen free medium.

Interactor
isolates S1, S4, and R3e0symbiont
Outcome
reduced acetylene to ethylenee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“three isolates S1, S4, and R3 reduced acetylene to ethylene in nitrogen-free semi-solid medium.”

✓ located verbatim in the source · abstract, characters 759–854 · show in text ↑
e1

“rice roots and shoots”

✓ located verbatim in the source · abstract, characters 620–641 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Nitrogen fixing isolates S1, S4 and R3 were identified as Enterobacter.

Interactor
EnterobacterEnterobactere0symbiont
Outcome
belonged to the genus Enterobactere0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗
Enterobacter
Enterobacter · Interactor · picture of the genus (one of its species)Public domain · Wikimedia Commons ↗

Verbatim

e0

“three nitrogen-fixing isolates S1, S4, and R3 belonged to the genus Enterobacter”

✓ located verbatim in the source · abstract, characters 934–1014 · show in text ↑
e1

“rice roots and shoots”

✓ located verbatim in the source · abstract, characters 620–641 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

The nonfixing isolate R8 was identified as Aeromonas.

Interactor
AeromonasAeromonase0symbiont
Outcome
belonged to the genus Aeromonase0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗
Aeromonas
Aeromonas · Interactor · picture of the genus (one of its species)CDC/ Dr. W.A. Clark · Public domain · Wikimedia Commons ↗

Verbatim

e0

“the non-fixing isolate R8 belonged to the genus Aeromonas.”

✓ located verbatim in the source · abstract, characters 1022–1080 · show in text ↑
e1

“rice roots and shoots”

✓ located verbatim in the source · abstract, characters 620–641 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Root isolate R8 was identified by 16S rRNA sequence as Aeromonas veronii with 99% similarity.

Interactor
Aeromonas veroniiAeromonas veroniie0symbiont
Outcome
similarity with Aeromonas veroniie0
Value
99%e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗
Aeromonas veronii
Aeromonas veronii · InteractorB. Domangue · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“The 1517-nucleotide-long sequence of the isolate R8 showed 99% similarity with Aeromonas veronii”

✓ located verbatim in the source · abstract, characters 1282–1378 · show in text ↑
e1

“rice roots and shoots”

✓ located verbatim in the source · abstract, characters 620–641 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Shoot isolate S1 was identified as Enterobacter cloacae with 97% sequence similarity.

Interactor
Enterobacter cloacaeEnterobacter cloacaee0symbiont
Outcome
similarity with the sequence of Enterobacter cloacaee0
Value
97%e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗
Enterobacter cloacae
Enterobacter cloacae · InteractorPublic domain · Wikimedia Commons ↗

Verbatim

e0

“S1 showed 97% similarity with the sequence of Enterobacter cloacae”

✓ located verbatim in the source · abstract, characters 1487–1553 · show in text ↑
e1

“rice roots and shoots”

✓ located verbatim in the source · abstract, characters 620–641 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

In Basmati 385, Enterobacter S1 inoculation produced maximum root area and biomass increases.

Material
Basmati 385e0
Treatment
inoculated with Enterobacter S1e0
Interactor
Enterobacter S1e0symbiont
Outcome
root area and plant biomasse0
Direction
maximum increasee0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“In the rice variety Basmati 385, maximum increase in root area and plant biomass was obtained in plants inoculated with Enterobacter S1 and Azospirillum Wb3”

✓ located verbatim in the source · abstract, characters 1780–1936 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

In Basmati 385, Azospirillum Wb3 inoculation produced maximum root area and biomass increases.

Material
Basmati 385e0
Treatment
inoculated with Enterobacter S1 and Azospirillum Wb3e0
Interactor
Azospirillum Wb3e0symbiont
Outcome
root area and plant biomasse0
Direction
maximum increasee0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“In the rice variety Basmati 385, maximum increase in root area and plant biomass was obtained in plants inoculated with Enterobacter S1 and Azospirillum Wb3”

✓ located verbatim in the source · abstract, characters 1780–1936 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

In Super Basmati, Enterobacter R3 inoculation produced maximum root area and biomass increases.

Material
Super Basmatie0
Treatment
inoculation with Enterobacter R3e0
Interactor
Enterobacter R3e0symbiont
Outcome
root area and plant biomasse0
Direction
maximum increasee0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“in the rice variety Super Basmati, inoculation with Enterobacter R3 resulted in maximum increase of root area and plant biomass.”

✓ located verbatim in the source · abstract, characters 1946–2074 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Azospirillum Wb3 yielded nearly 46% nitrogen derived from atmosphere in Basmati 385.

Material
Basmati 385e0
Treatment
inoculants Azospirillum Wb3e0
Interactor
Azospirillum Wb3e0symbiont
Outcome
nitrogen was derived from atmosphere (%Ndfa)e0
Direction
Maximume0
Value
46%e0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Maximum fixation was observed in Basmati 385 with the inoculants Azospirillum Wb3 and Enterobacter S1 where nearly 46% and 41% of the nitrogen was derived from atmosphere (%Ndfa), respectively.”

✓ located verbatim in the source · abstract, characters 2147–2340 · show in text ↑
e1

“rice variety Basmati 385”

✓ located verbatim in the source · abstract, characters 1787–1811 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Enterobacter S1 yielded nearly 41% nitrogen derived from atmosphere in Basmati 385.

Material
Basmati 385e0
Treatment
Enterobacter S1e0
Interactor
Enterobacter S1e0symbiont
Outcome
nitrogen was derived from atmosphere (%Ndfa)e0
Direction
Maximume0
Value
41%e0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Maximum fixation was observed in Basmati 385 with the inoculants Azospirillum Wb3 and Enterobacter S1 where nearly 46% and 41% of the nitrogen was derived from atmosphere (%Ndfa), respectively.”

✓ located verbatim in the source · abstract, characters 2147–2340 · show in text ↑
e1

“rice variety Basmati 385”

✓ located verbatim in the source · abstract, characters 1787–1811 · show in text ↑
Observationobservedoriginal resultpositivemeasured

Claim · model-written summary

Basmati 385 generally had higher nitrogen fixation than Super Basmati.

Material
Basmati 385e0
Outcome
nitrogen fixatione0
Direction
highere0
Comparator
Super Basmatie0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“higher nitrogen fixation was observed in variety Basmati 385 than in Super Basmati”

✓ located verbatim in the source · abstract, characters 2353–2435 · show in text ↑
e1

“rice varieties Basmati 385 and Super Basmati were inoculated”

✓ located verbatim in the source · abstract, characters 1601–1661 · show in text ↑

Enterobacter · growth · Oryza sativa (rice)Results differ

4 papers: 3 positive, 1 negative or no effect

2 papers in the same direction as this paper · 1 in the opposite direction

  1. negative
  2. positive
  3. positive
See all 4 papers →

Enterobacter · symbiosis · Oryza sativa (rice)Results agree

3 papers: 3 positive, 0 negative or no effect

2 papers in the same direction as this paper

  1. positive
  2. positive
See all 3 papers →

Azospirillum · growth · Oryza sativa (rice)Results agree

19 papers: 19 positive, 0 negative or no effect

18 papers in the same direction as this paper

  1. positive
  2. positive
  3. positive

15 papers more in this group

See all 19 papers →

inoculation · growth · Oryza sativa (rice)Positive and negative results

399 papers: 362 positive, 37 negative or no effect

361 papers in the same direction as this paper · 34 in the opposite direction · 3 reporting no difference from an alternative

  1. positive
  2. no effect
  3. negative

395 papers more in this group

See all 399 papers →

inoculation · symbiosis · Oryza sativa (rice)Results agree

8 papers: 8 positive, 0 negative or no effect

7 papers in the same direction as this paper

  1. positive
  2. positive
  3. positive

4 papers more in this group

See all 8 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.