Paper · 2016 · Genetics and Molecular Research

Salt stress alters DNA methylation levels in alfalfa (Medicago spp)

A. Al-Lawati; S. Al-Bahry; R. Victor; et al.

8
claims
16
verbatim quotes
80
citations
3
research areas
✓
Open access

Abstract

Modification of DNA methylation status is one of the mechanisms used by plants to adjust gene expression at both the transcriptional and posttranscriptional levels when plants are exposed to suboptimal conditions. Under abiotic stress, different cultivars often show heritable phenotypic variation accompanied by epigenetic polymorphisms at the DNA methylation level. This variation may provide the raw materials for plant breeding programs that aim to enhance abiotic stress tolerance, including salt tolerance. In this study, methylation-sensitive amplified polymorphism (MSAP) analysis was used to assess cytosine methylation levels in alfalfa (Medicago spp) roots exposed to increasing NaCl concentrations (0.0, 8.0, 12.0, and 20.0 dS/m). Eleven indigenous landraces were analyzed, in addition to a salt-tolerant cultivar that was used as a control. There was a slight increase in DNA methylation upon exposure to high levels of soil salinity. Phylogenetic analysis using MSAP showed epigenetic variation within and between the alfalfa landraces when exposed to saline conditions. Based on MSAP and enzyme-linked immunosorbent assay results, we found that salinity increased global DNA methylation status, particularly in plants exposed to the highest level of salinity (20 dS/m). Quantitative reverse transcription-polymerase chain reaction indicated that this might be mediated by the overexpression of methyltransferase homolog genes after exposure to saline conditions. DNA demethylation using 5-azacytidine reduced seedling lengths and dry and fresh weights, indicating a possible decrease in salinity tolerance. These results suggest that salinity affects DNA methylation flexibility.

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Claims 8

Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

High soil salinity slightly increased DNA methylation.

Taxon
alfalfaMedicago sativat0
Treatment
high levels of soil salinitye0
Outcome
DNA methylatione0
Direction
increasee0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Medicago sativa
Medicago sativa · TaxonDrepanostoma · CC BY 4.0 · iNaturalist ↗

Verbatim

t0

“alfalfa (Medicago spp)”

✓ located verbatim in the source · title, characters 45–67 · show in text ↑
e0

“There was a slight increase in DNA methylation upon exposure to high levels of soil salinity”

✓ located verbatim in the source · abstract, characters 854–946 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Saline exposure revealed epigenetic variation within and between alfalfa landraces.

Taxon
alfalfaMedicago sativat0
Material
alfalfa landracese0
Treatment
saline conditionse0
Outcome
epigenetic variation within and between the alfalfa landracese0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Medicago sativa
Medicago sativa · TaxonDrepanostoma · CC BY 4.0 · iNaturalist ↗

Verbatim

t0

“alfalfa (Medicago spp)”

✓ located verbatim in the source · title, characters 45–67 · show in text ↑
e0

“Phylogenetic analysis using MSAP showed epigenetic variation within and between the alfalfa landraces when exposed to saline conditions”

✓ located verbatim in the source · abstract, characters 948–1083 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Salinity increased global DNA methylation, especially at 20 dS/m.

Taxon
alfalfaMedicago sativat0
Treatment
salinitye0
Outcome
global DNA methylation statuse0
Direction
increasede0
Qualifier
20 dS/me0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Medicago sativa
Medicago sativa · TaxonDrepanostoma · CC BY 4.0 · iNaturalist ↗

Verbatim

t0

“alfalfa (Medicago spp)”

✓ located verbatim in the source · title, characters 45–67 · show in text ↑
e0

“salinity increased global DNA methylation status, particularly in plants exposed to the highest level of salinity (20 dS/m)”

✓ located verbatim in the source · abstract, characters 1160–1283 · show in text ↑
Mechanismhypothesisoriginal resultmeasured

Claim · model-written summary

Methyltransferase homolog gene overexpression may mediate the methylation response to saline conditions.

Taxon
alfalfaMedicago sativat0
Treatment
saline conditionse0
Gene
methyltransferase homolog genese0
Outcome
overexpression of methyltransferase homolog genese0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Medicago sativa
Medicago sativa · TaxonDrepanostoma · CC BY 4.0 · iNaturalist ↗

Verbatim

t0

“alfalfa (Medicago spp)”

✓ located verbatim in the source · title, characters 45–67 · show in text ↑
e0

“this might be mediated by the overexpression of methyltransferase homolog genes after exposure to saline conditions”

✓ located verbatim in the source · abstract, characters 1361–1476 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

DNA demethylation with 5-azacytidine reduced seedling lengths.

Taxon
alfalfaMedicago sativat0
Treatment
DNA demethylation using 5-azacytidinee0
Outcome
seedling lengthse0
Direction
reducede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Medicago sativa
Medicago sativa · TaxonDrepanostoma · CC BY 4.0 · iNaturalist ↗

Verbatim

t0

“alfalfa (Medicago spp)”

✓ located verbatim in the source · title, characters 45–67 · show in text ↑
e0

“DNA demethylation using 5-azacytidine reduced seedling lengths and dry and fresh weights”

✓ located verbatim in the source · abstract, characters 1478–1566 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

DNA demethylation with 5-azacytidine reduced dry and fresh weights.

Taxon
alfalfaMedicago sativat0
Treatment
DNA demethylation using 5-azacytidinee0
Outcome
dry and fresh weightse0
Direction
reducede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Medicago sativa
Medicago sativa · TaxonDrepanostoma · CC BY 4.0 · iNaturalist ↗

Verbatim

t0

“alfalfa (Medicago spp)”

✓ located verbatim in the source · title, characters 45–67 · show in text ↑
e0

“DNA demethylation using 5-azacytidine reduced seedling lengths and dry and fresh weights”

✓ located verbatim in the source · abstract, characters 1478–1566 · show in text ↑
Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

Demethylation results indicated a possible decrease in salinity tolerance.

Taxon
alfalfaMedicago sativat0
Outcome
salinity tolerancee0
Qualifier
possible decreasee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Medicago sativa
Medicago sativa · TaxonDrepanostoma · CC BY 4.0 · iNaturalist ↗

Verbatim

t0

“alfalfa (Medicago spp)”

✓ located verbatim in the source · title, characters 45–67 · show in text ↑
e0

“indicating a possible decrease in salinity tolerance”

✓ located verbatim in the source · abstract, characters 1568–1620 · show in text ↑
Observationauthor interpretationoriginal resultmeasured

Claim · model-written summary

The authors conclude that salinity affects DNA methylation flexibility.

Taxon
alfalfaMedicago sativat0
Treatment
salinitye0
Outcome
DNA methylation flexibilitye0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Medicago sativa
Medicago sativa · TaxonDrepanostoma · CC BY 4.0 · iNaturalist ↗

Verbatim

t0

“alfalfa (Medicago spp)”

✓ located verbatim in the source · title, characters 45–67 · show in text ↑
e0

“These results suggest that salinity affects DNA methylation flexibility”

✓ located verbatim in the source · abstract, characters 1622–1693 · show in text ↑