Paper · 2016 · Proceedings of the National Academy of Sciences

Regulatory network analysis reveals novel regulators of seed desiccation tolerance in Arabidopsis thaliana

Sandra Isabel González-Morales; Ricardo A. Chávez-Montes; Corina Hayano-Kanashiro; et al.

5
claims
10
verbatim quotes
170
citations
3
research areas
✓
Open access

Abstract

Desiccation tolerance (DT) is a remarkable process that allows seeds in the dry state to remain viable for long periods of time that in some instances exceed 1,000 y. It has been postulated that seed DT evolved by rewiring the regulatory and signaling networks that controlled vegetative DT, which itself emerged as a crucial adaptive trait of early land plants. Understanding the networks that regulate seed desiccation tolerance in model plant systems would provide the tools to understand an evolutionary process that played a crucial role in the diversification of flowering plants. In this work, we used an integrated approach that included genomics, bioinformatics, metabolomics, and molecular genetics to identify and validate molecular networks that control the acquisition of DT in Arabidopsis seeds. Two DT-specific transcriptional subnetworks were identified related to storage of reserve compounds and cellular protection mechanisms that act downstream of the embryo development master regulators LEAFY COTYLEDON 1 and 2, FUSCA 3, and ABSCICIC ACID INSENSITIVE 3. Among the transcription factors identified as major nodes in the DT regulatory subnetworks, PLATZ1, PLATZ2, and AGL67 were confirmed by knockout mutants and overexpression in a desiccation-intolerant mutant background to play an important role in seed DT. Additionally, we found that constitutive expression of PLATZ1 in WT plants confers partial DT in vegetative tissues.

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Claims 5

Observationobservedoriginal resultpositivemeasured

Claim · model-written summary

Two desiccation tolerance specific subnetworks were identified for reserve storage and cellular protection downstream of embryo regulators.

Taxon
Arabidopsis thalianaArabidopsis thalianat0
Gene
LEAFY COTYLEDON 1 and 2e0
Outcome
DT-specific transcriptional subnetworkse0
Value
Twoe0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis thaliana
Arabidopsis thaliana · TaxonOriginal uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“Arabidopsis thaliana”

✓ located verbatim in the source · title, characters 86–106 · show in text ↑
e0

“Two DT-specific transcriptional subnetworks were identified related to storage of reserve compounds and cellular protection mechanisms that act downstream of the embryo development master regulators LEAFY COTYLEDON 1 and 2, FUSCA 3, and ABSCICIC ACID INSENSITIVE 3.”

✓ located verbatim in the source · abstract, characters 810–1075 · show in text ↑
Observationobservedoriginal resultpositivemeasured

Claim · model-written summary

PLATZ1 was confirmed as important for seed desiccation tolerance.

Taxon
Arabidopsis thalianaArabidopsis thalianat0
Gene
PLATZ1e0
Outcome
seed DTe0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis thaliana
Arabidopsis thaliana · TaxonOriginal uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“Arabidopsis thaliana”

✓ located verbatim in the source · title, characters 86–106 · show in text ↑
e0

“PLATZ1, PLATZ2, and AGL67 were confirmed by knockout mutants and overexpression in a desiccation-intolerant mutant background to play an important role in seed DT.”

✓ located verbatim in the source · abstract, characters 1168–1331 · show in text ↑
Observationobservedoriginal resultpositivemeasured

Claim · model-written summary

PLATZ2 was confirmed as important for seed desiccation tolerance.

Taxon
Arabidopsis thalianaArabidopsis thalianat0
Gene
PLATZ2e0
Outcome
seed DTe0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis thaliana
Arabidopsis thaliana · TaxonOriginal uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“Arabidopsis thaliana”

✓ located verbatim in the source · title, characters 86–106 · show in text ↑
e0

“PLATZ1, PLATZ2, and AGL67 were confirmed by knockout mutants and overexpression in a desiccation-intolerant mutant background to play an important role in seed DT.”

✓ located verbatim in the source · abstract, characters 1168–1331 · show in text ↑
Observationobservedoriginal resultpositivemeasured

Claim · model-written summary

AGL67 was confirmed as important for seed desiccation tolerance.

Taxon
Arabidopsis thalianaArabidopsis thalianat0
Gene
AGL67e0
Outcome
seed DTe0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis thaliana
Arabidopsis thaliana · TaxonOriginal uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“Arabidopsis thaliana”

✓ located verbatim in the source · title, characters 86–106 · show in text ↑
e0

“PLATZ1, PLATZ2, and AGL67 were confirmed by knockout mutants and overexpression in a desiccation-intolerant mutant background to play an important role in seed DT.”

✓ located verbatim in the source · abstract, characters 1168–1331 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Constitutive PLATZ1 expression conferred partial desiccation tolerance to vegetative tissues.

Taxon
Arabidopsis thalianaArabidopsis thalianat0
Organ / stage
vegetative tissuese0
Treatment
constitutive expression of PLATZ1e0
Gene
PLATZ1e0
Outcome
partial DTe0

Not reportedComparatorDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis thaliana
Arabidopsis thaliana · TaxonOriginal uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“Arabidopsis thaliana”

✓ located verbatim in the source · title, characters 86–106 · show in text ↑
e0

“constitutive expression of PLATZ1 in WT plants confers partial DT in vegetative tissues.”

✓ located verbatim in the source · abstract, characters 1360–1448 · show in text ↑

overexpression · disease · Arabidopsis thaliana (thale cress)Positive and negative results

28 papers: 27 positive, 1 negative or no effect

26 papers in the same direction as this paper · 1 in the opposite direction

  1. negative
  2. positive
  3. positive

24 papers more in this group

See all 28 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.