Paper · 2016 · Tree Genetics & Genomes

High-throughput sequencing reveals that pale green lethal disorder in apple (Malus) stimulates stress responses and affects senescence

Benjamin Orcheski; Susan Brown

3
claims
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verbatim quotes
4
citations
3
research areas
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Open access · cc-by

Abstract

Pale green lethal (PGL) is a recessive genetic disorder of apple (Malus) characterized by severe chlorophyll deficiency and seedling lethality. Following germination, seedlings cannot photosynthesize and die at the cotyledon stage. We previously reported that the genetic and biochemical basis of PGL is due to a loss-of-function mutation in a gene required for the biosynthesis of phylloquinone (vitamin K1), a molecule essential for photosynthesis. For the present study, we used Illumina high-throughput RNA sequencing to identify genes differentially regulated between wild-type and PGL cotyledons. Changes in the expression of chlorophyll-related genes alone cannot explain the reduced chlorophyll content of PGL seedlings. However, genes putatively responding to numerous stress-related conditions including carbohydrate starvation, water deficit, and senescence were differentially regulated. This pattern of transcript accumulation suggests PGL seedlings alter many physiological and metabolic processes such as sorbitol metabolism, osmoprotectant production, and abscisic acid activity. The functions of individual genes relating to specific stresses are discussed. These findings provide insight into possible mechanisms PGL seedlings employ during stress response. Pale green lethal disorder may be a useful model for studying abiotic stress and senescence in rosaceous fruit tree species.

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Claims 3

Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

Changes in the expression of chlorophyll-related genes alone cannot explain the reduced chlorophyll content of PGL apple seedlings.

Material
PGL seedlingse0
Outcome
reduced chlorophyll contente0
Qualifier
Changes in the expression of chlorophyll-related genes alone cannot explaine0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Malus domestica
Malus domestica · TaxonW.carter · CC0 · Wikimedia Commons ↗

Verbatim

e0

“Changes in the expression of chlorophyll-related genes alone cannot explain the reduced chlorophyll content of PGL seedlings”

✓ located verbatim in the source · abstract, characters 603–727 · show in text ↑
t0

“apple”

✓ located verbatim in the source · title, characters 70–75 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Genes putatively responding to numerous stress-related conditions, including carbohydrate starvation, water deficit and senescence, were differentially regulated in PGL apple cotyledons.

Outcome
differentially regulatede0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Malus domestica
Malus domestica · TaxonW.carter · CC0 · Wikimedia Commons ↗

Verbatim

e0

“genes putatively responding to numerous stress-related conditions including carbohydrate starvation, water deficit, and senescence were differentially regulated”

✓ located verbatim in the source · abstract, characters 738–898 · show in text ↑
t0

“apple”

✓ located verbatim in the source · title, characters 70–75 · show in text ↑
Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

The pattern of transcript accumulation suggests that PGL apple seedlings alter many physiological and metabolic processes such as sorbitol metabolism, osmoprotectant production and abscisic acid activity.

Material
PGL seedlingse0
Outcome
physiological and metabolic processese0
Qualifier
pattern of transcript accumulation suggestse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Malus domestica
Malus domestica · TaxonW.carter · CC0 · Wikimedia Commons ↗

Verbatim

e0

“This pattern of transcript accumulation suggests PGL seedlings alter many physiological and metabolic processes such as sorbitol metabolism, osmoprotectant production, and abscisic acid activity”

✓ located verbatim in the source · abstract, characters 900–1094 · show in text ↑
t0

“apple”

✓ located verbatim in the source · title, characters 70–75 · show in text ↑