Paper · 2018 · Microbes and Environments

Effects of Different Sources of Nitrogen on Endophytic Colonization of Rice Plants by Azospirillum sp. B510

Kamrun Naher; Hiroki Miwa; Shin Okazaki; et al.

11
claims
20
verbatim quotes
29
citations
2
research areas
✓
Open access

Abstract

Azospirillum sp. B510, a free-living nitrogen-fixing bacterium isolated from the stems of rice (Oryza sativa cv. Nipponbare), was investigated to establish effective conditions for the colonization of rice plants. We analyzed the effects of the nitrogen sources KNO3, NH4Cl, urea (CO[NH2]2), and NH4NO3 at different concentrations (0.01–10 mM) on this colonization. Nitrogen promoted plant growth in a concentration-dependent manner, with minor differences being observed among the different nitrogen sources. Bacterial colonization was markedly suppressed on media containing NH4+ concentrations higher than 1 mM. Since concentrations of up to and including 10 mM NH4+ did not exhibit any antibacterial activity, we analyzed several factors affecting the NH4+-dependent inhibition of endophytic colonization, including the accumulation of the reactive oxygen species H2O2 and the secretion of the chemotactic substrate malic acid. The accumulation of H2O2 was increased in rice roots grown on 1 mM NH4Cl. The amounts of malic acid secreted from NH4-grown rice plants were lower than those secreted from plants grown without nitrogen or with KNO3. Although the bacterium exhibited chemotactic activity, moving towards root exudates from plants grown without nitrogen and KNO3-grown plants, this activity was not observed with root exudates from NH4+-grown plants. NH4+, but not NO3−, caused the acidification of growth media, which inhibited plant bacterial colonization. These NH4+-dependent phenomena were markedly suppressed by the stabilization of medium pH using a buffer. These results demonstrate that the type and concentration of nitrogen fertilizer affects the colonization of rice plants by Azospirillum sp. B510.

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Claims 11

Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Nitrogen promoted rice growth with increasing concentration and minor differences among sources.

Treatment
Nitrogene0
Outcome
plant growthe0
Direction
promotede0
Qualifier
minor differences being observed among the different nitrogen sourcese0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Nitrogen promoted plant growth in a concentration-dependent manner, with minor differences being observed among the different nitrogen sources.”

✓ located verbatim in the source · abstract, characters 366–509 · show in text ↑
t0

“Rice Plants”

✓ located verbatim in the source · title, characters 71–82 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

NH4+ above 1 mM markedly suppressed Azospirillum colonization of rice.

Treatment
NH4+ concentrations higher than 1 mMe0
Interactor
Azospirillum sp. B510Azospirillum sp. B510t0symbiont
Outcome
Bacterial colonizatione0
Direction
suppressede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗
Azospirillum sp. B510
Azospirillum sp. B510 · Interactor · picture of its genus (no picture of exactly this name)Fadelblaid · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Bacterial colonization was markedly suppressed on media containing NH4+ concentrations higher than 1 mM.”

✓ located verbatim in the source · abstract, characters 510–614 · show in text ↑
t0

“Rice Plants by Azospirillum sp. B510”

✓ located verbatim in the source · title, characters 71–107 · show in text ↑
Observationobservedoriginal resultno effectmeasured

Claim · model-written summary

NH4+ up to 10 mM exhibited no antibacterial activity.

Interactor
Azospirillum sp. B510Azospirillum sp. B510t0symbiont
Outcome
antibacterial activitye0
Qualifier
up to and including 10 mM NH4+e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗
Azospirillum sp. B510
Azospirillum sp. B510 · Interactor · picture of its genus (no picture of exactly this name)Fadelblaid · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“concentrations of up to and including 10 mM NH4+ did not exhibit any antibacterial activity”

✓ located verbatim in the source · abstract, characters 621–712 · show in text ↑
t0

“Rice Plants by Azospirillum sp. B510”

✓ located verbatim in the source · title, characters 71–107 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Rice roots grown on 1 mM NH4Cl accumulated more H2O2.

Organ / stage
rootse0
Treatment
1 mM NH4Cle0
Outcome
accumulation of H2O2e0
Direction
increasede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“The accumulation of H2O2 was increased in rice roots grown on 1 mM NH4Cl.”

✓ located verbatim in the source · abstract, characters 932–1005 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

NH4-grown rice secreted less malic acid than rice without nitrogen or with KNO3.

Treatment
NH4-growne0
Outcome
amounts of malic acid secretede0
Direction
lowere0
Comparator
plants grown without nitrogen or with KNO3e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“The amounts of malic acid secreted from NH4-grown rice plants were lower than those secreted from plants grown without nitrogen or with KNO3.”

✓ located verbatim in the source · abstract, characters 1006–1147 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Azospirillum was chemotactic toward exudates from rice grown without nitrogen.

Interactor
Azospirillum sp. B510Azospirillum sp. B510t0symbiont
Outcome
chemotactic activity, moving towards root exudatese0
Qualifier
plants grown without nitrogene0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗
Azospirillum sp. B510
Azospirillum sp. B510 · Interactor · picture of its genus (no picture of exactly this name)Fadelblaid · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“the bacterium exhibited chemotactic activity, moving towards root exudates from plants grown without nitrogen and KNO3-grown plants”

✓ located verbatim in the source · abstract, characters 1157–1288 · show in text ↑
t0

“Rice Plants by Azospirillum sp. B510”

✓ located verbatim in the source · title, characters 71–107 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Azospirillum was chemotactic toward exudates from KNO3-grown rice.

Interactor
Azospirillum sp. B510Azospirillum sp. B510t0symbiont
Outcome
chemotactic activity, moving towards root exudatese0
Qualifier
KNO3-grown plantse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗
Azospirillum sp. B510
Azospirillum sp. B510 · Interactor · picture of its genus (no picture of exactly this name)Fadelblaid · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“the bacterium exhibited chemotactic activity, moving towards root exudates from plants grown without nitrogen and KNO3-grown plants”

✓ located verbatim in the source · abstract, characters 1157–1288 · show in text ↑
t0

“Rice Plants by Azospirillum sp. B510”

✓ located verbatim in the source · title, characters 71–107 · show in text ↑
Observationobservedoriginal resultnegativemeasured

Claim · model-written summary

Azospirillum showed no chemotaxis toward exudates from NH4+-grown rice.

Interactor
Azospirillum sp. B510Azospirillum sp. B510t0symbiont
Outcome
this activity was not observede0
Qualifier
NH4+-grown plantse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗
Azospirillum sp. B510
Azospirillum sp. B510 · Interactor · picture of its genus (no picture of exactly this name)Fadelblaid · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“this activity was not observed with root exudates from NH4+-grown plants”

✓ located verbatim in the source · abstract, characters 1290–1362 · show in text ↑
t0

“Rice Plants by Azospirillum sp. B510”

✓ located verbatim in the source · title, characters 71–107 · show in text ↑
Mechanismobservedoriginal resultnegativemeasured

Claim · model-written summary

NH4+ acidified growth media and thereby inhibited rice bacterial colonization.

Treatment
NH4+e0
Interactor
Azospirillum sp. B510Azospirillum sp. B510t0symbiont
Outcome
plant bacterial colonizatione0
Qualifier
acidification of growth mediae0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗
Azospirillum sp. B510
Azospirillum sp. B510 · Interactor · picture of its genus (no picture of exactly this name)Fadelblaid · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“NH4+, but not NO3−, caused the acidification of growth media, which inhibited plant bacterial colonization.”

✓ located verbatim in the source · abstract, characters 1364–1471 · show in text ↑
t0

“Rice Plants by Azospirillum sp. B510”

✓ located verbatim in the source · title, characters 71–107 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

NO3− did not acidify growth media.

Outcome
acidification of growth mediae0
Qualifier
not NO3−e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“NH4+, but not NO3−, caused the acidification of growth media”

✓ located verbatim in the source · abstract, characters 1364–1424 · show in text ↑
t0

“Rice Plants”

✓ located verbatim in the source · title, characters 71–82 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Buffer stabilization of medium pH markedly suppressed the NH4+-dependent phenomena.

Treatment
stabilization of medium pH using a buffere0
Outcome
NH4+-dependent phenomenae0
Direction
suppressede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“These NH4+-dependent phenomena were markedly suppressed by the stabilization of medium pH using a buffer.”

✓ located verbatim in the source · abstract, characters 1472–1577 · show in text ↑
t0

“Rice Plants”

✓ located verbatim in the source · title, characters 71–82 · show in text ↑

nitrogen · growth · Oryza sativa (rice)Positive and negative results

511 papers: 402 positive, 109 negative or no effect

401 papers in the same direction as this paper · 101 in the opposite direction · 8 reporting no difference from an alternative

  1. negative
  2. negative
  3. negative

507 papers more in this group

See all 511 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.