Paper · 2019 · Frontiers in Plant Science

The Altered Expression of microRNA408 Influences the Arabidopsis Response to Iron Deficiency

Àngela Carrió-Seguí; Omar Ruiz-Rivero; Laura Villamayor-Belinchón; et al.

9
claims
18
verbatim quotes
44
citations
2
research areas
✓
Open access · cc-by

Abstract

MicroRNAs contribute to the adaptation of plants to varying environmental conditions by affecting systemic mineral nutrient homeostasis. Copper and iron deficiencies antagonistically control the expression of Arabidopsis thaliana microRNA408 (miR408), which post-transcriptionally regulates laccase-like multicopper oxidase family members LAC3, LAC12 and LAC13. In this work, we used miR408 T-DNA insertion mutants (408-KO1 and 408-KO2) and a previously characterized transgenic line overexpressing miR408 (35S:408-14) to explore how miR408 influences copper- and iron-dependent metabolism. We observed that the altered expression of miR408 diminished plant performance and the activation of the iron-regulated genes under iron-deficient conditions. Consistently with the low expression of the miR408-target laccases, we showed that the vascular bundle lignification of the 35S:408-14 plants diminished. The decrease in the phenoloxidase and ferroxidase activities exhibited by wild-type plants under iron deficiency did not occur in the 408-KO1 plants, probably due to the higher expression of laccases. Finally, we observed that the hydrogen peroxide levels under iron starvation were altered in both the 408-KO1 and 35S:408-14 lines. Taken together, these results suggest that Arabidopsis plants with modified miR408 levels undergo multiple deregulations under iron-deficient conditions

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Claims 9

Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Altered miR408 expression diminished Arabidopsis plant performance under iron deficiency.

Taxon
ArabidopsisArabidopsist0
Treatment
altered expression of miR408e0
Gene
miR408e0
Outcome
plant performancee0
Direction
diminishede0
Qualifier
under iron-deficient conditionse0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“the altered expression of miR408 diminished plant performance and the activation of the iron-regulated genes under iron-deficient conditions.”

✓ located verbatim in the source · abstract, characters 608–749 · show in text ↑
t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 53–64 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Altered miR408 expression diminished activation of iron-regulated genes under iron deficiency.

Taxon
ArabidopsisArabidopsist0
Treatment
altered expression of miR408e0
Gene
miR408e0
Outcome
activation of the iron-regulated genese0
Direction
diminishede0
Qualifier
under iron-deficient conditionse0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“the altered expression of miR408 diminished plant performance and the activation of the iron-regulated genes under iron-deficient conditions.”

✓ located verbatim in the source · abstract, characters 608–749 · show in text ↑
t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 53–64 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Vascular bundle lignification diminished in the miR408-overexpressing 35S:408-14 line.

Taxon
ArabidopsisArabidopsist0
Material
35S:408-14e0
Treatment
overexpressing miR408e1
Gene
miR408e1
Outcome
vascular bundle lignificatione0
Direction
diminishede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“the vascular bundle lignification of the 35S:408-14 plants diminished.”

✓ located verbatim in the source · abstract, characters 833–903 · show in text ↑
e1

“transgenic line overexpressing miR408 (35S:408-14)”

✓ located verbatim in the source · abstract, characters 468–518 · show in text ↑
t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 53–64 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Wild-type Arabidopsis phenoloxidase and ferroxidase activities decreased under iron deficiency.

Taxon
ArabidopsisArabidopsist0
Material
wild-typee0
Treatment
iron deficiencye0
Outcome
phenoloxidase and ferroxidase activitiese0
Direction
decreasee0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“The decrease in the phenoloxidase and ferroxidase activities exhibited by wild-type plants under iron deficiency did not occur in the 408-KO1 plants”

✓ located verbatim in the source · abstract, characters 904–1052 · show in text ↑
t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 53–64 · show in text ↑
Intervention effectobservedoriginal resultno effectmeasured

Claim · model-written summary

Iron deficiency did not decrease phenoloxidase and ferroxidase activities in 408-KO1 as it did in wild type.

Taxon
ArabidopsisArabidopsist0
Material
408-KO1e0
Treatment
iron deficiencye0
Outcome
phenoloxidase and ferroxidase activitiese0
Direction
did not occure0
Comparator
wild-typee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“The decrease in the phenoloxidase and ferroxidase activities exhibited by wild-type plants under iron deficiency did not occur in the 408-KO1 plants”

✓ located verbatim in the source · abstract, characters 904–1052 · show in text ↑
t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 53–64 · show in text ↑
Mechanismhypothesisoriginal resultmeasured

Claim · model-written summary

Higher laccase expression probably explains the absence of activity decreases in 408-KO1.

Taxon
ArabidopsisArabidopsist0
Material
408-KO1e0
Gene
laccasese0
Outcome
phenoloxidase and ferroxidase activitiese0
Qualifier
probably due to the higher expression of laccasese0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“The decrease in the phenoloxidase and ferroxidase activities exhibited by wild-type plants under iron deficiency did not occur in the 408-KO1 plants, probably due to the higher expression of laccases.”

✓ located verbatim in the source · abstract, characters 904–1104 · show in text ↑
t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 53–64 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Hydrogen peroxide levels were altered under iron starvation in 408-KO1.

Taxon
ArabidopsisArabidopsist0
Material
408-KO1e0
Treatment
iron starvatione0
Outcome
hydrogen peroxide levelse0

Not reportedComparatorDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“the hydrogen peroxide levels under iron starvation were altered in both the 408-KO1 and 35S:408-14 lines.”

✓ located verbatim in the source · abstract, characters 1131–1236 · show in text ↑
t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 53–64 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Hydrogen peroxide levels were altered under iron starvation in 35S:408-14.

Taxon
ArabidopsisArabidopsist0
Material
35S:408-14e0
Treatment
iron starvatione0
Outcome
hydrogen peroxide levelse0

Not reportedComparatorDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“the hydrogen peroxide levels under iron starvation were altered in both the 408-KO1 and 35S:408-14 lines.”

✓ located verbatim in the source · abstract, characters 1131–1236 · show in text ↑
t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 53–64 · show in text ↑
Mechanismauthor interpretationoriginal resultnegativemeasured

Claim · model-written summary

Modified miR408 levels suggest multiple deregulations under iron deficiency in Arabidopsis.

Taxon
ArabidopsisArabidopsise0
Gene
miR408e0
Outcome
multiple deregulationse0
Qualifier
under iron-deficient conditionse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“these results suggest that Arabidopsis plants with modified miR408 levels undergo multiple deregulations under iron-deficient conditions”

✓ located verbatim in the source · abstract, characters 1253–1389 · show in text ↑

transgenic · yield · ArabidopsisPositive and negative results

14 papers: 11 positive, 3 negative or no effect

2 papers in the same direction as this paper · 11 in the opposite direction

  1. positive
  2. positive
  3. positive

10 papers more in this group

See all 14 papers →

transgenic · molecular: expression · ArabidopsisPositive and negative results

46 papers: 20 positive, 26 negative or no effect

25 papers in the same direction as this paper · 20 in the opposite direction

  1. positive
  2. positive
  3. positive

42 papers more in this group

See all 46 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.