Paper · 2019 · Frontiers in Microbiology

Early Root Transcriptomic Changes in Wheat Seedlings Colonized by Trichoderma harzianum Under Different Inorganic Nitrogen Supplies

M. Belén Rubio; A. Emilio Martínez de Alba; Carlos Nicolás; et al.

6
claims
10
verbatim quotes
18
citations
3
research areas
✓
Open access · cc-by

Abstract

Wheat is one of the most important crops worldwide. The use of plant growth promoting microorganisms such as those of the genus Trichoderma constitutes an alternative to chemical fertilizers, since they are cheaper and not detrimental to the environment. However, the interaction between Trichoderma and wheat plants has been scarcely studied, at least at a molecular level. In the present work, a microarray approach was used to study the early transcriptomic changes induced in wheat roots by Trichoderma harzianum applied alone or in combination with different concentrations of calcium nitrate [Ca(NO3)2], this last used as nitrogen (N) source. Our results show that T. harzianum causes larger transcriptomic changes than Ca(NO3)2 in wheat roots, and such changes are different when plants are challenged with Trichoderma alone or are treated with a combination of T. harzianum and Ca(NO3)2. Overall, T. harzianum activates the expression of defense-related genes at early stages of the interaction with the roots, while this fungus reduces the expression of genes related to plant growth and development. Moreover, the current study in wheat roots subjected to the different T. harzianum and Ca(NO3)2 combinations reveals that the number of transcriptomic changes was higher when compared against those caused by the different Ca(NO3)2 concentrations than when it was compared against those caused by T. harzianum. N metabolism gene expression changes were in agreement with the levels of nitrate reductase activity measured in plants from Trichoderma plus Ca(NO3)2 conditions. Results were also concordant with plant phenotypes, which showed reduced growth at early interaction stages when inoculated with T. harzianum or with its combination with Ca(NO3)2 at the lowest dosage. These results being in a good agreement with the recognized role of Trichoderma as inducer of plant defense.

Abstract from the paper’s OpenAlex record; open copy licensed cc-by. Read at the source ↗

The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 6

Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

T. harzianum caused larger transcriptomic changes in wheat roots than Ca(NO3)2 did.

Organ / stage
rootse0
Treatment
T. harzianume0
Interactor
T. harzianumTrichoderma harzianume0symbiont
Outcome
transcriptomic changese0
Direction
largere0
Comparator
Ca(NO3)2e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗
Trichoderma harzianum
Trichoderma harzianum · InteractorUS Department of Agriculture, Agricultural Research Service, Systematic Botany and Mycology Laboratory, [1] · Public domain · Wikimedia Commons ↗

Verbatim

e0

“T. harzianum causes larger transcriptomic changes than Ca(NO3)2 in wheat roots”

✓ located verbatim in the source · abstract, characters 671–749 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

T. harzianum activated expression of defense-related genes in wheat roots at early stages of the interaction.

Taxon
Wheat SeedlingsTriticum aestivumt0
Organ / stage
rootse0
Treatment
T. harzianume0
Interactor
T. harzianumTrichoderma harzianume0symbiont
Outcome
expression of defense-related genese0
Direction
activatese0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗
Trichoderma harzianum
Trichoderma harzianum · InteractorUS Department of Agriculture, Agricultural Research Service, Systematic Botany and Mycology Laboratory, [1] · Public domain · Wikimedia Commons ↗

Verbatim

t0

“Wheat Seedlings”

✓ located verbatim in the source · title, characters 37–52 · show in text ↑
e0

“T. harzianum activates the expression of defense-related genes at early stages of the interaction with the roots”

✓ located verbatim in the source · abstract, characters 905–1017 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

T. harzianum reduced expression of genes related to plant growth and development in wheat.

Taxon
Wheat SeedlingsTriticum aestivumt0
Treatment
funguse0
Interactor
funguse0symbiont
Outcome
expression of genes related to plant growth and developmente0
Direction
reducese0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“Wheat Seedlings”

✓ located verbatim in the source · title, characters 37–52 · show in text ↑
e0

“this fungus reduces the expression of genes related to plant growth and development”

✓ located verbatim in the source · abstract, characters 1025–1108 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

In wheat roots under the T. harzianum and Ca(NO3)2 combinations, the number of transcriptomic changes was higher when compared against the different Ca(NO3)2 concentrations than against T. harzianum.

Organ / stage
rootse0
Outcome
number of transcriptomic changese0
Direction
highere0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“wheat roots subjected to the different T. harzianum and Ca(NO3)2 combinations reveals that the number of transcriptomic changes was higher when compared against those caused by the different Ca(NO3)2 concentrations than when it was compared against those caused by T. harzianum”

✓ located verbatim in the source · abstract, characters 1141–1418 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

N metabolism gene expression changes agreed with nitrate reductase activity measured in wheat plants from the Trichoderma plus Ca(NO3)2 conditions.

Taxon
Wheat SeedlingsTriticum aestivumt0
Treatment
Trichoderma plus Ca(NO3)2 conditionse0
Gene
nitrate reductasee0
Outcome
N metabolism gene expression changese0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“Wheat Seedlings”

✓ located verbatim in the source · title, characters 37–52 · show in text ↑
e0

“N metabolism gene expression changes were in agreement with the levels of nitrate reductase activity measured in plants from Trichoderma plus Ca(NO3)2 conditions”

✓ located verbatim in the source · abstract, characters 1420–1581 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Wheat plants showed reduced growth at early interaction stages when inoculated with T. harzianum or with its combination with Ca(NO3)2 at the lowest dosage.

Taxon
Wheat SeedlingsTriticum aestivumt0
Treatment
inoculated with T. harzianum or with its combination with Ca(NO3)2 at the lowest dosagee0
Interactor
T. harzianumTrichoderma harzianume0symbiont
Outcome
growthe0
Direction
reducede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗
Trichoderma harzianum
Trichoderma harzianum · InteractorUS Department of Agriculture, Agricultural Research Service, Systematic Botany and Mycology Laboratory, [1] · Public domain · Wikimedia Commons ↗

Verbatim

t0

“Wheat Seedlings”

✓ located verbatim in the source · title, characters 37–52 · show in text ↑
e0

“reduced growth at early interaction stages when inoculated with T. harzianum or with its combination with Ca(NO3)2 at the lowest dosage”

✓ located verbatim in the source · abstract, characters 1648–1783 · show in text ↑

calcium atom · growth · Triticum aestivum (wheat)Results differ

43 papers: 35 positive, 8 negative or no effect

7 papers in the same direction as this paper · 35 in the opposite direction

  1. positive
  2. positive
  3. positive

39 papers more in this group

See all 43 papers →

Trichoderma harzianum · growth · Triticum aestivum (wheat)Positive and negative results

14 papers: 11 positive, 3 negative or no effect

2 papers in the same direction as this paper · 11 in the opposite direction

  1. positive
  2. positive
  3. positive

10 papers more in this group

See all 14 papers →

inoculation · growth · Triticum aestivum (wheat)Positive and negative results

532 papers: 476 positive, 56 negative or no effect

55 papers in the same direction as this paper · 476 in the opposite direction

  1. positive
  2. positive
  3. positive

528 papers more in this group

See all 532 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.