Paper · 2020 · The Plant Journal

Rice plants respond to ammonium stress by adopting a helical root growth pattern

Letian Jia; Yuanming Xie; Zhen Wang; et al.

8
claims
10
verbatim quotes
54
citations
2
research areas
✓
Open access

Abstract

High levels of ammonium nutrition reduce plant growth and different plant species have developed distinct strategies to maximize ammonium acquisition while alleviating ammonium toxicity through modulating root growth. To date, the mechanisms underlying plant tolerance or sensitivity towards ammonium remain unclear. Rice (Oryza sativa) uses ammonium as its main N source. Here we show that ammonium supply restricts rice root elongation and induces a helical growth pattern, which is attributed to root acidification resulting from ammonium uptake. Ammonium-induced low pH triggers the asymmetric distribution of auxin in rice root tips through changes in auxin signaling, thereby inducing a helical growth response. Blocking auxin signaling completely inhibited this root response. In contrast, this root response is not activated in ammonium-treated Arabidopsis. Acidification of Arabidopsis roots leads to the protonation of indole-3-acetic acid and dampening of the intracellular auxin signaling levels that are required for maintaining root growth. Our study suggests a different mode of action by ammonium on the root pattern and auxin response machinery in rice versus Arabidopsis, and the rice-specific helical root response towards ammonium is an expression of the ability of rice to moderate auxin signaling and root growth to utilize ammonium while confronting acidic stress.

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Claims 8

Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Ammonium supply restricts rice root elongation.

Treatment
ammonium supplye0
Outcome
rice root elongatione0
Direction
restrictse0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Rice (Oryza sativa) uses ammonium as its main N source. Here we show that ammonium supply restricts rice root elongation and induces a helical growth pattern”

✓ located verbatim in the source · abstract, characters 317–474 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Ammonium induces helical root growth in rice.

Treatment
ammonium supplye0
Outcome
helical growth patterne0

Not reportedComparatorDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Rice (Oryza sativa) uses ammonium as its main N source. Here we show that ammonium supply restricts rice root elongation and induces a helical growth pattern”

✓ located verbatim in the source · abstract, characters 317–474 · show in text ↑
Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

Root acidification from ammonium uptake is attributed as the cause of rice helical growth.

Outcome
helical growth patterne0
Qualifier
root acidification resulting from ammonium uptakee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“rice root elongation and induces a helical growth pattern, which is attributed to root acidification resulting from ammonium uptake.”

✓ located verbatim in the source · abstract, characters 417–549 · show in text ↑
e1

“Rice (Oryza sativa)”

✓ located verbatim in the source · abstract, characters 317–336 · show in text ↑
Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

Ammonium-induced low pH triggers asymmetric auxin distribution in rice root tips through altered signaling.

Treatment
Ammonium-induced low pHe0
Outcome
asymmetric distribution of auxin in rice root tipse0
Qualifier
changes in auxin signalinge0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Ammonium-induced low pH triggers the asymmetric distribution of auxin in rice root tips through changes in auxin signaling”

✓ located verbatim in the source · abstract, characters 550–672 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Blocking auxin signaling inhibited the rice helical root response.

Treatment
Blocking auxin signalinge0
Outcome
helical growth responsee1
Direction
inhibitede0
Qualifier
completelye0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Blocking auxin signaling completely inhibited this root response.”

✓ located verbatim in the source · abstract, characters 718–783 · show in text ↑
e1

“rice root tips through changes in auxin signaling, thereby inducing a helical growth response.”

✓ located verbatim in the source · abstract, characters 623–717 · show in text ↑
Intervention effectobservedoriginal resultno effectmeasured

Claim · model-written summary

Ammonium treatment did not activate the helical root response in Arabidopsis.

Taxon
ArabidopsisArabidopsise0
Treatment
ammonium-treatede0
Outcome
root responsee0
Direction
not activatede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“this root response is not activated in ammonium-treated Arabidopsis.”

✓ located verbatim in the source · abstract, characters 797–865 · show in text ↑
Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

Arabidopsis root acidification protonates indole-3-acetic acid.

Taxon
ArabidopsisArabidopsise0
Outcome
protonation of indole-3-acetic acide0
Qualifier
Acidification of Arabidopsis rootse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Acidification of Arabidopsis roots leads to the protonation of indole-3-acetic acid”

✓ located verbatim in the source · abstract, characters 866–949 · show in text ↑
Mechanismauthor interpretationoriginal resultnegativemeasured

Claim · model-written summary

Arabidopsis root acidification dampens intracellular auxin signaling needed for root growth.

Taxon
ArabidopsisArabidopsise0
Outcome
intracellular auxin signaling levelse0
Direction
dampeninge0
Qualifier
Acidification of Arabidopsis rootse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Acidification of Arabidopsis roots leads to the protonation of indole-3-acetic acid and dampening of the intracellular auxin signaling levels that are required for maintaining root growth.”

✓ located verbatim in the source · abstract, characters 866–1054 · show in text ↑

class · growth · Oryza sativa (rice)Positive and negative results

80 papers: 62 positive, 18 negative or no effect

17 papers in the same direction as this paper · 62 in the opposite direction

  1. positive
  2. positive
  3. positive

76 papers more in this group

See all 80 papers →

nitrogen · growth · Oryza sativa (rice)Positive and negative results

511 papers: 402 positive, 109 negative or no effect

108 papers in the same direction as this paper · 402 in the opposite direction

  1. positive
  2. negative
  3. negative

507 papers more in this group

See all 511 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.