Paper · 2022 · Journal of Experimental Botany

Ammonium transporters cooperatively regulate rice crown root formation responding to ammonium nitrogen

Long Luo; Ming Zhu; Letian Jia; et al.

7
claims
13
verbatim quotes
27
citations
3
research areas
—
Not open access

Abstract

Crown roots (CRs) are major components of the rice root system. They form at the basal node of the shoot, and their development is greatly influenced by environmental factors. Ammonium nitrogen is known to impact plant root development through ammonium transporters (AMTs), but it remains unclear whether ammonium and AMTs play roles in rice CR formation. In this study, we revealed a significant role of ammonium, rather than nitrate, in regulating rice CR development. High ammonium supply increases CR formation but inhibits CR elongation. Genetic evidence showed that ammonium regulation of CR development relies on ammonium uptake mediated jointly by ammonium transporters OsAMT1;1, OsAMT1;2; OsAMT1;3, and OsAMT2;1, but not on root acidification which was the result of ammonium uptake. OsAMTs are also needed for glutamine-induced CR formation. Furthermore, we showed that polar auxin transport dependent on the PIN auxin efflux carriers acts downstream of ammonium uptake and assimilation to activate local auxin signaling at CR primordia, in turn promoting CR formation. Taken together, our results highlight a critical role for OsAMTs in cooperatively regulating CR formation through regulating auxin transport under nitrogen-rich conditions.

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Claims 7

Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

High ammonium supply increases rice crown root formation.

Treatment
High ammonium supplye0
Outcome
CR formatione0
Direction
increasese0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“High ammonium supply increases CR formation”

✓ located verbatim in the source · abstract, characters 471–514 · show in text ↑
t0

“rice crown root formation”

✓ located verbatim in the source · title, characters 45–70 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

High ammonium supply inhibits rice crown root elongation.

Treatment
High ammonium supplye0
Outcome
CR elongatione0
Direction
inhibitse0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“High ammonium supply increases CR formation but inhibits CR elongation”

✓ located verbatim in the source · abstract, characters 471–541 · show in text ↑
t0

“rice crown root formation”

✓ located verbatim in the source · title, characters 45–70 · show in text ↑
Intervention effectobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

Ammonium, rather than nitrate, regulates rice crown root development.

Treatment
ammoniume0
Outcome
CR developmente0
Comparator
nitratee0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“a significant role of ammonium, rather than nitrate, in regulating rice CR development”

✓ located verbatim in the source · abstract, characters 383–469 · show in text ↑
Mechanismauthor interpretationoriginal resultpositivemeasured

Claim · model-written summary

Ammonium regulation of rice crown roots relies jointly on four ammonium transporters.

Gene
OsAMT1;1, OsAMT1;2; OsAMT1;3, and OsAMT2;1e0
Outcome
CR developmente0
Qualifier
ammonium uptakee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“ammonium regulation of CR development relies on ammonium uptake mediated jointly by ammonium transporters OsAMT1;1, OsAMT1;2; OsAMT1;3, and OsAMT2;1”

✓ located verbatim in the source · abstract, characters 572–720 · show in text ↑
t0

“rice crown root formation”

✓ located verbatim in the source · title, characters 45–70 · show in text ↑
Mechanismauthor interpretationoriginal resultno effectmeasured

Claim · model-written summary

Root acidification does not mediate ammonium regulation of rice crown root development.

Outcome
root acidificatione0
Qualifier
ammonium uptakee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“not on root acidification which was the result of ammonium uptake”

✓ located verbatim in the source · abstract, characters 726–791 · show in text ↑
t0

“rice crown root formation”

✓ located verbatim in the source · title, characters 45–70 · show in text ↑
Mechanismobservedoriginal resultpositivemeasured

Claim · model-written summary

Ammonium transporters are needed for glutamine-induced rice crown root formation.

Treatment
glutaminee0
Gene
OsAMTse0
Outcome
CR formatione0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“OsAMTs are also needed for glutamine-induced CR formation”

✓ located verbatim in the source · abstract, characters 793–850 · show in text ↑
t0

“rice crown root formation”

✓ located verbatim in the source · title, characters 45–70 · show in text ↑
Mechanismauthor interpretationoriginal resultpositivemeasured

Claim · model-written summary

PIN-dependent polar auxin transport activates local auxin signaling at rice crown root primordia and promotes crown root formation.

Organ / stage
CR primordiae0
Gene
PIN auxin efflux carrierse0
Outcome
CR formatione0
Qualifier
local auxin signalinge0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“polar auxin transport dependent on the PIN auxin efflux carriers acts downstream of ammonium uptake and assimilation to activate local auxin signaling at CR primordia, in turn promoting CR formation”

✓ located verbatim in the source · abstract, characters 880–1078 · show in text ↑
t0

“rice crown root formation”

✓ located verbatim in the source · title, characters 45–70 · show in text ↑

nitrogen · growth · Oryza sativa (rice)Positive and negative results

511 papers: 402 positive, 109 negative or no effect

401 papers in the same direction as this paper · 101 in the opposite direction · 8 reporting no difference from an alternative

  1. negative
  2. negative
  3. negative

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Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.