Paper · 2021 · International Journal of Molecular Sciences

Upstream Open Reading Frame Mediated Translation of WNK8 Is Required for ABA Response in Arabidopsis

Zhiyong Li; Yajuan Fu; Jinyu Shen; et al.

8
claims
8
verbatim quotes
11
citations
2
research areas
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Open access · cc-by

Abstract

With no lysine (K) (WNK) kinases comprise a family of serine/threonine kinases belonging to an evolutionary branch of the eukaryotic kinome. These special kinases contain a unique active site and are found in a wide range of eukaryotes. The model plant Arabidopsis has been reported to have 11 WNK members, of which WNK8 functions as a negative regulator of abscisic acid (ABA) signaling. Here, we found that the expression of WNK8 is post-transcriptionally regulated through an upstream open reading frame (uORF) found in its 5′ untranslated region (5′-UTR). This uORF has been predicted to encode a conserved peptide named CPuORF58 in both monocotyledons and dicotyledons. The analysis of the published ribosome footprinting studies and the study of the frameshift CPuORF58 peptide with altered repression capability suggested that this uORF causes ribosome stalling. Plants transformed with the native WNK8 promoter driving WNK8 expression were comparable with wild-type plants, whereas the plants transformed with a similar construct with mutated CPuORF58 start codon were less sensitive to ABA. In addition, WNK8 and its downstream target RACK1 were found to synergistically coordinate ABA signaling rather than antagonistically modulating glucose response and flowering in plants. Collectively, these results suggest that the WNK8 expression must be tightly regulated to fulfill the demands of ABA response in plants.

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Claims 8

Mechanismobservedoriginal resultmeasured

Claim · model-written summary

WNK8 expression is regulated after transcription by an upstream open reading frame.

Gene
WNK8e0
Outcome
expression of WNK8e0

Not reportedTaxon

Verbatim

e0

“the expression of WNK8 is post-transcriptionally regulated through an upstream open reading frame (uORF) found in its 5′ untranslated region (5′-UTR).”

✓ located verbatim in the source · abstract, characters 409–559 · show in text ↑
Observationobservedoriginal resultsimulated

Claim · model-written summary

The WNK8 uORF was predicted to encode conserved CPuORF58 in monocots and dicots.

Taxon
monocotyledons and dicotyledonse0
Gene
CPuORF58e0
Outcome
conserved peptidee0

Verbatim

e0

“This uORF has been predicted to encode a conserved peptide named CPuORF58 in both monocotyledons and dicotyledons.”

✓ located verbatim in the source · abstract, characters 560–674 · show in text ↑
Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

Ribosome-footprint and frameshift analyses suggest the uORF stalls ribosomes.

Gene
CPuORF58e0
Outcome
ribosome stallinge0

Not reportedTaxon

Verbatim

e0

“The analysis of the published ribosome footprinting studies and the study of the frameshift CPuORF58 peptide with altered repression capability suggested that this uORF causes ribosome stalling.”

✓ located verbatim in the source · abstract, characters 675–869 · show in text ↑
Intervention effectobservedoriginal resultno effectmeasured

Claim · model-written summary

Plants with native WNK8 promoter constructs resembled wild-type plants.

Taxon
PlantsViridiplantaee0
Treatment
native WNK8 promoter driving WNK8 expressione0
Gene
WNK8e0
Outcome
comparablee0
Direction
comparablee0
Comparator
wild-type plantse0

Verbatim

e0

“Plants transformed with the native WNK8 promoter driving WNK8 expression were comparable with wild-type plants”

✓ located verbatim in the source · abstract, characters 870–980 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Plants with a mutated CPuORF58 start codon were less sensitive to ABA.

Taxon
plantsViridiplantaee0
Treatment
mutated CPuORF58 start codone0
Gene
CPuORF58e0
Outcome
sensitive to ABAe0
Direction
lesse0

Not reportedComparator

Verbatim

e0

“plants transformed with a similar construct with mutated CPuORF58 start codon were less sensitive to ABA.”

✓ located verbatim in the source · abstract, characters 994–1099 · show in text ↑
Mechanismobservedoriginal resultpositivemeasured

Claim · model-written summary

WNK8 and RACK1 synergistically coordinate ABA signaling.

Taxon
plantsViridiplantaee0
Gene
WNK8 and its downstream target RACK1e0
Outcome
ABA signalinge0

Verbatim

e0

“WNK8 and its downstream target RACK1 were found to synergistically coordinate ABA signaling rather than antagonistically modulating glucose response and flowering in plants.”

✓ located verbatim in the source · abstract, characters 1113–1286 · show in text ↑
Mechanismobservedoriginal resultno effectmeasured

Claim · model-written summary

WNK8 and RACK1 did not antagonistically modulate glucose response or flowering.

Taxon
plantsViridiplantaee0
Gene
WNK8 and its downstream target RACK1e0
Outcome
glucose response and floweringe0

Verbatim

e0

“WNK8 and its downstream target RACK1 were found to synergistically coordinate ABA signaling rather than antagonistically modulating glucose response and flowering in plants.”

✓ located verbatim in the source · abstract, characters 1113–1286 · show in text ↑
Mechanismauthor interpretationoriginal resultbasis n/a

Claim · model-written summary

The authors infer that WNK8 expression needs tight regulation for ABA response.

Taxon
plantsViridiplantaee0
Gene
WNK8e0
Outcome
ABA responsee0

Verbatim

e0

“the WNK8 expression must be tightly regulated to fulfill the demands of ABA response in plants.”

✓ located verbatim in the source · abstract, characters 1328–1423 · show in text ↑

loss of function · molecular: metabolites · Viridiplantae (plants)Positive and negative results

14 papers: 5 positive, 9 negative or no effect

8 papers in the same direction as this paper · 5 in the opposite direction

  1. positive
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Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.