Abstract
In this issue,Penmetsa et al. (pp. ) identify a novel hyper-nodulation mutant in Medicago truncatula, designatedsunn (for supernumeric nodules). In marked contrast to the parental genotype that develops approximately 8 nodules per root in response to inoculation with Sinorhizobium meliloti, thesunn mutant develops roughly 70 nodules. In this respect, it is similar to the previously described ethylene-insensitive mutantsickle. Penmetsa et al., however, show that these two mutants are readily distinguishable. First, in contrast tosickle, in which insensitivity to ethylene is thought to be causal to the hyper-nodulation phenotype, nodulation in sunnshows normal sensitivity to ethylene. (Curiously, the root growth ofsunn mutants is insensitive to ethylene, although other aspects of the ethylene triple response are normal). Second, the anatomy the two mutants differ in the nodulation zone: Successful infection and nodule development in sunn occur predominantly opposite xylem poles, similar to wild type. In sickle, however, both infection and nodulation occur randomly throughout the circumference of the developing root. Third, genetic analysis indicates that sunn and sickle correspond to separate and unlinked loci, whereas the sunn/sickle double mutant exhibits a novel and additive super-nodulation phenotype. Similar to super-nodulation mutants described in soybean (Glycine max) and Lotus japonicus, grafting experiments demonstrate that the sunn phenotype is determined by the genotype of the shoot, implicating a mobile signal (auxin?) in conditioning nodule number. The authors propose a model for the genetic control of nodule number in M. truncatula, wherein distinct genetic pathways involving sickle andsunn, respectively, mediate rhizobial infection and nodule organogenesis. Eurycoma longifolia, a medicinal tree of Southeast Asia, has been overharvested. Single nucleotide polymorphisms have proven useful in assessing the genetic diversity of this threatened species in the wild. Biotin is a water-soluble vitamin that is synthesized by plants and required by all living organisms for normal cellular function and growth. As a coenzyme, biotin plays a critical role in the regulation of a number of enzymes involved in primary metabolism. In this issue, Che et al. (pp. ) demonstrate a new non-catalytic function for biotin in plants. Specifically, the authors report that biotin regulates the expression of the subunit genes of methylcrotonyl-coenzyme A (CoA) carboxylase (MCCase) by mechanisms independent of its role as a cofactor. The authors took advantage of the bio1 mutant of Arabidopsis, which is blocked in the de novo biosynthesis of biotin, to elucidate the role of biotin in regulating MCCase expression. In response to thebio1-associated depletion of biotin, the normally biotinylated A-subunit of methylcrotonyl-CoA carboxylase (MCCase) accumulates in its inactive apo-form, and both subunits of MCCase hyperaccumulate. This induction occurs either because the translation of each subunit mRNA is enhanced or because the turnover of each subunit protein is reduced. Evidence is also presented that biotin is required for the two MCCase subunit genes to respond to metabolic signals. Under environmental conditions that reduce the carbon status of seedlings (reduced CO2 or darkness), transcription of the MCCase genes is normally induced. However, this induction in gene transcription fails to occur in seedlings that are depleted of biotin. These studies indicate that biotin not only regulates gene expression by modulating transcription (as occurs in bacteria and animals), but also mediates regulation of gene expression at the translational and/or posttranslational level. In contrast to trans-zeatin, the major and ubiquitous cytokinin of higher plants, cis-zeatin has traditionally been viewed as a rare isomer of low biological activity. Recent studies, however, have indicated that the cis-isomers are the dominant form of cytokinins at particular stages of development in certain plant species and have been shown to be associated with male sterility in another. Such observations raise the question of whether cis-zeatin is of parallel importance to trans-zeatin. Indeed, a recent report suggesting the existence of a maize (Zea mays) gene (cisZOG1) encoding an O-glucosyltransferase specific to cis-zeatin lends strong support to this view. (O-glucosylation changes trans-zeatin to a storage and transport form that is resistant to degradation by cytokinin oxidases.) In this issue, Veach et al. (pp. ) describe the isolation of a second maize cisZOG gene, the differential expression of cisZOG1 and cisZOG2, and the identification of substantial amounts of cis-zeatin isomers in maize tissues. The expression of cisZOG1 was high in maize roots and kernels, whereas cisZOG2 expression was high in roots but low in kernels. The O-glucosides of cis-isomers were found in roots, young cobs, and kernels, which is compatible with the expression of cisZOG1 and cisZOG2 in maize. Comparing the two groups of cytokinins, cis-isomers were more prevalent in roots, stems, and leaves, whereas trans-isomers were more abundant in the kernels. O-glucosylation of cis-zeatin appears to be a natural metabolic process in maize. Whether cis-zeatin serves as a precursor to the active trans-isomer or has unique physiological functions remains to be demonstrated. Many secondary compounds of economic and medicinal significance occur in rare and exotic plant species, often at extremely low levels. Therefore, there has been much interest in using cell cultures from such species to produce secondary metabolites. One way that the efficiency of such in vitro systems might be improved is by engineering the flux of metabolites through the biosynthetic pathways of interest. A potential pitfall of this strategy, however, is that the hyperaccumulation of certain secondary metabolites may be autotoxic to the cell culture itself. In this issue, Goossens et al. (pp. ) examine the possibility of genetically engineering ABC transporters into cultured cells as a way of enhancing the extrusion of potentially toxic secondary metabolites. The ABC protein family, the molecular biology of which is coincidentally reviewed in this issue by Jasinski, Ducos, Martinoia, and Boutry (pp. ) is a large, ubiquitous, and diverse group of proteins that transport an impressively wide variety of substrates across biological membranes via the binding and hydrolysis of ATP. The substrates that can be transported by ABC transporter proteins include peptides, carbohydrates, lipids, heavy metal chelates, inorganic acids, steroids, and xenobiotics. ABC transporters are associated with the acquisition of multiple drug resistance by pathogenic organisms and with detoxification pathways that deal with either endogenously synthesized or environmental toxic compounds. With respect to the secretion of plant secondary metabolites, two subfamilies of ABC proteins, pleiotropic drug resistance (PDR) and multidrug resistance-associated proteins (MRP), are of particular interest. To identify yeast (Saccharomyces cerevisiae) ABC transporters with substrate specificity for tropane alkaloids, Goossens et al. assessed the sensitivity of different yeast strains deficient in various species of ABC transporters to poisoning by the tropane alkaloids hyoscyamine and scopolamine. Based on this assay, an ABC transporter (yeast PDR5) with specificity for tropane alkaloids was identified. When PDR5 was transgenically introduced into tobacco (Nicotiana tabacum) cv Bright Yellow-2 (BY-2) cell lines, the secretion of tropane alkaloids from the plant cells was increased. Because of their diverse substrate specificities ABC transporters might eventually be useful in enhancing the production of a wide variety of secondary metabolites in plant cell cultures.
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Claims 20
Claim · model-written summary
The sunn mutant has roughly 70 nodules compared with about 8 in the parent.
- Taxon
- Medicago truncatula
Medicago truncatulae0
- Material
- thesunn mutante1
- Interactor
- Sinorhizobium meliloti
Sinorhizobium melilotie1symbiont
- Outcome
- nodulese1
- Value
- roughly 70 nodulese1
- Comparator
- parental genotypee1
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e0“Medicago truncatula”
e1“the parental genotype that develops approximately 8 nodules per root in response to inoculation with Sinorhizobium meliloti, thesunn mutant develops roughly 70 nodules”
Claim · model-written summary
The sunn mutant retained normal ethylene sensitivity for nodulation.
- Taxon
- Medicago truncatula
Medicago truncatulae0
- Material
- sunne1
- Outcome
- nodulation in sunnshows normal sensitivity to ethylenee1
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e0“Medicago truncatula”
e1“nodulation in sunnshows normal sensitivity to ethylene”
Claim · model-written summary
The sunn mutant root growth was ethylene insensitive.
- Taxon
- Medicago truncatula
Medicago truncatulae0
- Material
- sunne1
- Outcome
- root growth ofsunn mutants is insensitive to ethylenee1
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e0“Medicago truncatula”
e1“the root growth ofsunn mutants is insensitive to ethylene”
Claim · model-written summary
In sunn, infection and nodule development occurred mainly opposite xylem poles.
- Taxon
- Medicago truncatula
Medicago truncatulae0
- Material
- sunne1
- Outcome
- Successful infection and nodule development in sunn occur predominantly opposite xylem polese1
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e0“Medicago truncatula”
e1“Successful infection and nodule development in sunn occur predominantly opposite xylem poles”
Claim · model-written summary
In sickle, infection and nodulation occurred around the developing root circumference.
- Taxon
- Medicago truncatula
Medicago truncatulae0
- Material
- sicklee1
- Outcome
- infection and nodulation occur randomly throughout the circumference of the developing roote1
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e0“Medicago truncatula”
e1“In sickle, however, both infection and nodulation occur randomly throughout the circumference of the developing root”
Claim · model-written summary
sunn and sickle were separate unlinked loci.
- Taxon
- Medicago truncatula
Medicago truncatulae0
- Gene
- sunn and sicklee1
- Outcome
- separate and unlinked locie1
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e0“Medicago truncatula”
e1“sunn and sickle correspond to separate and unlinked loci”
Claim · model-written summary
The sunn/sickle double mutant had an additive super-nodulation phenotype.
- Taxon
- Medicago truncatula
Medicago truncatulae0
- Material
- sunn/sickle double mutante1
- Outcome
- novel and additive super-nodulation phenotypee1
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e0“Medicago truncatula”
e1“the sunn/sickle double mutant exhibits a novel and additive super-nodulation phenotype”
Claim · model-written summary
Grafting showed the sunn phenotype depended on shoot genotype.
- Taxon
- Medicago truncatula
Medicago truncatulae0
- Organ / stage
- shoote1
- Gene
- sunne1
- Outcome
- sunn phenotype is determined by the genotype of the shoote1
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e0“Medicago truncatula”
e1“grafting experiments demonstrate that the sunn phenotype is determined by the genotype of the shoot”
Claim · model-written summary
SNPs were useful for assessing wild Eurycoma genetic diversity.
- Taxon
- Eurycoma longifolia
Eurycoma longifoliae0 - Outcome
- assessing the genetic diversitye1
Not reportedComparator
Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Verbatim
e0“Eurycoma longifolia, a medicinal tree of Southeast Asia”
e1“Single nucleotide polymorphisms have proven useful in assessing the genetic diversity of this threatened species in the wild”
Claim · model-written summary
Biotin depletion caused inactive MCCase A subunit accumulation.
- Taxon
- Arabidopsis
Arabidopsise0 - Gene
- methylcrotonyl-CoA carboxylase (MCCase)e1
- Compound
- biotine1
- Outcome
- A-subunit of methylcrotonyl-CoA carboxylase (MCCase) accumulates in its inactive apo-forme1
Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Verbatim
e0“bio1 mutant of Arabidopsis”
e1“thebio1-associated depletion of biotin, the normally biotinylated A-subunit of methylcrotonyl-CoA carboxylase (MCCase) accumulates in its inactive apo-form”
Claim · model-written summary
Biotin depletion caused both MCCase subunits to hyperaccumulate.
- Taxon
- Arabidopsis
Arabidopsise0 - Gene
- MCCasee1
- Outcome
- both subunits of MCCase hyperaccumulatee1
Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Verbatim
e0“bio1 mutant of Arabidopsis”
e1“both subunits of MCCase hyperaccumulate”
Claim · model-written summary
Biotin-depleted seedlings failed to induce MCCase transcription under low carbon.
- Taxon
- Arabidopsis
Arabidopsise0 - Compound
- biotine1
- Outcome
- induction in gene transcription fails to occure1
Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Verbatim
e0“bio1 mutant of Arabidopsis”
e1“this induction in gene transcription fails to occur in seedlings that are depleted of biotin”
Claim · model-written summary
A second maize cisZOG gene was isolated.
Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Verbatim
e0“a second maize cisZOG gene”
Claim · model-written summary
cisZOG1 expression was high in maize roots and kernels.
Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Verbatim
e0“maize roots”
e1“The expression of cisZOG1 was high in maize roots and kernels”
Claim · model-written summary
cisZOG2 expression was high in roots but low in kernels.
Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Verbatim
e0“maize tissues”
e1“cisZOG2 expression was high in roots but low in kernels”
Claim · model-written summary
cis-isomer O-glucosides were found in maize roots, young cobs and kernels.
- Outcome
- O-glucosides of cis-isomers were found in roots, young cobs, and kernelse1
Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Verbatim
e0“maize tissues”
e1“The O-glucosides of cis-isomers were found in roots, young cobs, and kernels”
Claim · model-written summary
cis-isomers were more prevalent in maize roots, stems and leaves.
Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Verbatim
e0“maize tissues”
e1“cis-isomers were more prevalent in roots, stems, and leaves”
Claim · model-written summary
trans-isomers were more abundant in maize kernels.
Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Verbatim
e0“maize tissues”
e1“trans-isomers were more abundant in the kernels”
Claim · model-written summary
Yeast PDR5 was identified with specificity for tropane alkaloids.
- Taxon
- tobacco
Nicotiana tabacume0
- Gene
- yeast PDR5e1
- Outcome
- specificity for tropane alkaloidse1
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e0“tobacco (Nicotiana tabacum)”
e1“an ABC transporter (yeast PDR5) with specificity for tropane alkaloids was identified”
Claim · model-written summary
Introducing PDR5 increased tropane alkaloid secretion from tobacco cells.
- Taxon
- tobacco
Nicotiana tabacume1
- Treatment
- PDR5 was transgenically introducede1
- Gene
- PDR5e1
- Outcome
- secretion of tropane alkaloidse1
- Direction
- increasede1
Not reportedComparator
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e0“tobacco (Nicotiana tabacum) cv Bright Yellow-2 (BY-2) cell lines”
e1“When PDR5 was transgenically introduced into tobacco (Nicotiana tabacum) cv Bright Yellow-2 (BY-2) cell lines, the secretion of tropane alkaloids from the plant cells was increased”