Paper · 2003 · PLANT PHYSIOLOGY

On the Inside

Peter V. Minorsky

20
claims
39
verbatim quotes
0
citations
7
research areas
—
Not open access

Abstract

In this issue,Penmetsa et al. (pp. ) identify a novel hyper-nodulation mutant in Medicago truncatula, designatedsunn (for supernumeric nodules). In marked contrast to the parental genotype that develops approximately 8 nodules per root in response to inoculation with Sinorhizobium meliloti, thesunn mutant develops roughly 70 nodules. In this respect, it is similar to the previously described ethylene-insensitive mutantsickle. Penmetsa et al., however, show that these two mutants are readily distinguishable. First, in contrast tosickle, in which insensitivity to ethylene is thought to be causal to the hyper-nodulation phenotype, nodulation in sunnshows normal sensitivity to ethylene. (Curiously, the root growth ofsunn mutants is insensitive to ethylene, although other aspects of the ethylene triple response are normal). Second, the anatomy the two mutants differ in the nodulation zone: Successful infection and nodule development in sunn occur predominantly opposite xylem poles, similar to wild type. In sickle, however, both infection and nodulation occur randomly throughout the circumference of the developing root. Third, genetic analysis indicates that sunn and sickle correspond to separate and unlinked loci, whereas the sunn/sickle double mutant exhibits a novel and additive super-nodulation phenotype. Similar to super-nodulation mutants described in soybean (Glycine max) and Lotus japonicus, grafting experiments demonstrate that the sunn phenotype is determined by the genotype of the shoot, implicating a mobile signal (auxin?) in conditioning nodule number. The authors propose a model for the genetic control of nodule number in M. truncatula, wherein distinct genetic pathways involving sickle andsunn, respectively, mediate rhizobial infection and nodule organogenesis. Eurycoma longifolia, a medicinal tree of Southeast Asia, has been overharvested. Single nucleotide polymorphisms have proven useful in assessing the genetic diversity of this threatened species in the wild. Biotin is a water-soluble vitamin that is synthesized by plants and required by all living organisms for normal cellular function and growth. As a coenzyme, biotin plays a critical role in the regulation of a number of enzymes involved in primary metabolism. In this issue, Che et al. (pp. ) demonstrate a new non-catalytic function for biotin in plants. Specifically, the authors report that biotin regulates the expression of the subunit genes of methylcrotonyl-coenzyme A (CoA) carboxylase (MCCase) by mechanisms independent of its role as a cofactor. The authors took advantage of the bio1 mutant of Arabidopsis, which is blocked in the de novo biosynthesis of biotin, to elucidate the role of biotin in regulating MCCase expression. In response to thebio1-associated depletion of biotin, the normally biotinylated A-subunit of methylcrotonyl-CoA carboxylase (MCCase) accumulates in its inactive apo-form, and both subunits of MCCase hyperaccumulate. This induction occurs either because the translation of each subunit mRNA is enhanced or because the turnover of each subunit protein is reduced. Evidence is also presented that biotin is required for the two MCCase subunit genes to respond to metabolic signals. Under environmental conditions that reduce the carbon status of seedlings (reduced CO2 or darkness), transcription of the MCCase genes is normally induced. However, this induction in gene transcription fails to occur in seedlings that are depleted of biotin. These studies indicate that biotin not only regulates gene expression by modulating transcription (as occurs in bacteria and animals), but also mediates regulation of gene expression at the translational and/or posttranslational level. In contrast to trans-zeatin, the major and ubiquitous cytokinin of higher plants, cis-zeatin has traditionally been viewed as a rare isomer of low biological activity. Recent studies, however, have indicated that the cis-isomers are the dominant form of cytokinins at particular stages of development in certain plant species and have been shown to be associated with male sterility in another. Such observations raise the question of whether cis-zeatin is of parallel importance to trans-zeatin. Indeed, a recent report suggesting the existence of a maize (Zea mays) gene (cisZOG1) encoding an O-glucosyltransferase specific to cis-zeatin lends strong support to this view. (O-glucosylation changes trans-zeatin to a storage and transport form that is resistant to degradation by cytokinin oxidases.) In this issue, Veach et al. (pp. ) describe the isolation of a second maize cisZOG gene, the differential expression of cisZOG1 and cisZOG2, and the identification of substantial amounts of cis-zeatin isomers in maize tissues. The expression of cisZOG1 was high in maize roots and kernels, whereas cisZOG2 expression was high in roots but low in kernels. The O-glucosides of cis-isomers were found in roots, young cobs, and kernels, which is compatible with the expression of cisZOG1 and cisZOG2 in maize. Comparing the two groups of cytokinins, cis-isomers were more prevalent in roots, stems, and leaves, whereas trans-isomers were more abundant in the kernels. O-glucosylation of cis-zeatin appears to be a natural metabolic process in maize. Whether cis-zeatin serves as a precursor to the active trans-isomer or has unique physiological functions remains to be demonstrated. Many secondary compounds of economic and medicinal significance occur in rare and exotic plant species, often at extremely low levels. Therefore, there has been much interest in using cell cultures from such species to produce secondary metabolites. One way that the efficiency of such in vitro systems might be improved is by engineering the flux of metabolites through the biosynthetic pathways of interest. A potential pitfall of this strategy, however, is that the hyperaccumulation of certain secondary metabolites may be autotoxic to the cell culture itself. In this issue, Goossens et al. (pp. ) examine the possibility of genetically engineering ABC transporters into cultured cells as a way of enhancing the extrusion of potentially toxic secondary metabolites. The ABC protein family, the molecular biology of which is coincidentally reviewed in this issue by Jasinski, Ducos, Martinoia, and Boutry (pp. ) is a large, ubiquitous, and diverse group of proteins that transport an impressively wide variety of substrates across biological membranes via the binding and hydrolysis of ATP. The substrates that can be transported by ABC transporter proteins include peptides, carbohydrates, lipids, heavy metal chelates, inorganic acids, steroids, and xenobiotics. ABC transporters are associated with the acquisition of multiple drug resistance by pathogenic organisms and with detoxification pathways that deal with either endogenously synthesized or environmental toxic compounds. With respect to the secretion of plant secondary metabolites, two subfamilies of ABC proteins, pleiotropic drug resistance (PDR) and multidrug resistance-associated proteins (MRP), are of particular interest. To identify yeast (Saccharomyces cerevisiae) ABC transporters with substrate specificity for tropane alkaloids, Goossens et al. assessed the sensitivity of different yeast strains deficient in various species of ABC transporters to poisoning by the tropane alkaloids hyoscyamine and scopolamine. Based on this assay, an ABC transporter (yeast PDR5) with specificity for tropane alkaloids was identified. When PDR5 was transgenically introduced into tobacco (Nicotiana tabacum) cv Bright Yellow-2 (BY-2) cell lines, the secretion of tropane alkaloids from the plant cells was increased. Because of their diverse substrate specificities ABC transporters might eventually be useful in enhancing the production of a wide variety of secondary metabolites in plant cell cultures.

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Claims 20

Observationobservedreview summarymeasured

Claim · model-written summary

The sunn mutant has roughly 70 nodules compared with about 8 in the parent.

Taxon
Medicago truncatulaMedicago truncatulae0
Material
thesunn mutante1
Interactor
Sinorhizobium melilotiSinorhizobium melilotie1symbiont
Outcome
nodulese1
Value
roughly 70 nodulese1
Comparator
parental genotypee1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Medicago truncatula
Medicago truncatula · TaxonNinjatacoshell · CC BY-SA 3.0 · Wikimedia Commons ↗
Sinorhizobium meliloti
Sinorhizobium meliloti · InteractorNinjatacoshell · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Medicago truncatula”

✓ located verbatim in the source · abstract, characters 81–100 · show in text ↑
e1

“the parental genotype that develops approximately 8 nodules per root in response to inoculation with Sinorhizobium meliloti, thesunn mutant develops roughly 70 nodules”

✓ located verbatim in the source · abstract, characters 167–334 · show in text ↑
Observationobservedreview summarymeasured

Claim · model-written summary

The sunn mutant retained normal ethylene sensitivity for nodulation.

Taxon
Medicago truncatulaMedicago truncatulae0
Material
sunne1
Outcome
nodulation in sunnshows normal sensitivity to ethylenee1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Medicago truncatula
Medicago truncatula · TaxonNinjatacoshell · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Medicago truncatula”

✓ located verbatim in the source · abstract, characters 81–100 · show in text ↑
e1

“nodulation in sunnshows normal sensitivity to ethylene”

✓ located verbatim in the source · abstract, characters 636–690 · show in text ↑
Observationobservedreview summarymeasured

Claim · model-written summary

The sunn mutant root growth was ethylene insensitive.

Taxon
Medicago truncatulaMedicago truncatulae0
Material
sunne1
Outcome
root growth ofsunn mutants is insensitive to ethylenee1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Medicago truncatula
Medicago truncatula · TaxonNinjatacoshell · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Medicago truncatula”

✓ located verbatim in the source · abstract, characters 81–100 · show in text ↑
e1

“the root growth ofsunn mutants is insensitive to ethylene”

✓ located verbatim in the source · abstract, characters 704–761 · show in text ↑
Observationobservedreview summarymeasured

Claim · model-written summary

In sunn, infection and nodule development occurred mainly opposite xylem poles.

Taxon
Medicago truncatulaMedicago truncatulae0
Material
sunne1
Outcome
Successful infection and nodule development in sunn occur predominantly opposite xylem polese1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Medicago truncatula
Medicago truncatula · TaxonNinjatacoshell · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Medicago truncatula”

✓ located verbatim in the source · abstract, characters 81–100 · show in text ↑
e1

“Successful infection and nodule development in sunn occur predominantly opposite xylem poles”

✓ located verbatim in the source · abstract, characters 898–990 · show in text ↑
Observationobservedreview summarymeasured

Claim · model-written summary

In sickle, infection and nodulation occurred around the developing root circumference.

Taxon
Medicago truncatulaMedicago truncatulae0
Material
sicklee1
Outcome
infection and nodulation occur randomly throughout the circumference of the developing roote1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Medicago truncatula
Medicago truncatula · TaxonNinjatacoshell · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Medicago truncatula”

✓ located verbatim in the source · abstract, characters 81–100 · show in text ↑
e1

“In sickle, however, both infection and nodulation occur randomly throughout the circumference of the developing root”

✓ located verbatim in the source · abstract, characters 1014–1130 · show in text ↑
Observationobservedreview summarymeasured

Claim · model-written summary

sunn and sickle were separate unlinked loci.

Taxon
Medicago truncatulaMedicago truncatulae0
Gene
sunn and sicklee1
Outcome
separate and unlinked locie1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Medicago truncatula
Medicago truncatula · TaxonNinjatacoshell · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Medicago truncatula”

✓ located verbatim in the source · abstract, characters 81–100 · show in text ↑
e1

“sunn and sickle correspond to separate and unlinked loci”

✓ located verbatim in the source · abstract, characters 1171–1227 · show in text ↑
Observationobservedreview summarymeasured

Claim · model-written summary

The sunn/sickle double mutant had an additive super-nodulation phenotype.

Taxon
Medicago truncatulaMedicago truncatulae0
Material
sunn/sickle double mutante1
Outcome
novel and additive super-nodulation phenotypee1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Medicago truncatula
Medicago truncatula · TaxonNinjatacoshell · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Medicago truncatula”

✓ located verbatim in the source · abstract, characters 81–100 · show in text ↑
e1

“the sunn/sickle double mutant exhibits a novel and additive super-nodulation phenotype”

✓ located verbatim in the source · abstract, characters 1237–1323 · show in text ↑
Observationobservedreview summarymeasured

Claim · model-written summary

Grafting showed the sunn phenotype depended on shoot genotype.

Taxon
Medicago truncatulaMedicago truncatulae0
Organ / stage
shoote1
Gene
sunne1
Outcome
sunn phenotype is determined by the genotype of the shoote1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Medicago truncatula
Medicago truncatula · TaxonNinjatacoshell · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Medicago truncatula”

✓ located verbatim in the source · abstract, characters 81–100 · show in text ↑
e1

“grafting experiments demonstrate that the sunn phenotype is determined by the genotype of the shoot”

✓ located verbatim in the source · abstract, characters 1417–1516 · show in text ↑
Method / resourceobservedreview summarymeasured

Claim · model-written summary

SNPs were useful for assessing wild Eurycoma genetic diversity.

Taxon
Eurycoma longifoliaEurycoma longifoliae0
Outcome
assessing the genetic diversitye1

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Eurycoma longifolia
Eurycoma longifolia · Taxon · picture from its Wikimedia Commons categoryTongkatAliFactChecker · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Eurycoma longifolia, a medicinal tree of Southeast Asia”

✓ located verbatim in the source · abstract, characters 1801–1856 · show in text ↑
e1

“Single nucleotide polymorphisms have proven useful in assessing the genetic diversity of this threatened species in the wild”

✓ located verbatim in the source · abstract, characters 1882–2006 · show in text ↑
Observationobservedreview summarymeasured

Claim · model-written summary

Biotin depletion caused inactive MCCase A subunit accumulation.

Taxon
ArabidopsisArabidopsise0
Gene
methylcrotonyl-CoA carboxylase (MCCase)e1
Compound
biotine1
Outcome
A-subunit of methylcrotonyl-CoA carboxylase (MCCase) accumulates in its inactive apo-forme1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“bio1 mutant of Arabidopsis”

✓ located verbatim in the source · abstract, characters 2597–2623 · show in text ↑
e1

“thebio1-associated depletion of biotin, the normally biotinylated A-subunit of methylcrotonyl-CoA carboxylase (MCCase) accumulates in its inactive apo-form”

✓ located verbatim in the source · abstract, characters 2761–2916 · show in text ↑
Observationobservedreview summarymeasured

Claim · model-written summary

Biotin depletion caused both MCCase subunits to hyperaccumulate.

Taxon
ArabidopsisArabidopsise0
Gene
MCCasee1
Outcome
both subunits of MCCase hyperaccumulatee1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“bio1 mutant of Arabidopsis”

✓ located verbatim in the source · abstract, characters 2597–2623 · show in text ↑
e1

“both subunits of MCCase hyperaccumulate”

✓ located verbatim in the source · abstract, characters 2922–2961 · show in text ↑
Observationobservedreview summarymeasured

Claim · model-written summary

Biotin-depleted seedlings failed to induce MCCase transcription under low carbon.

Taxon
ArabidopsisArabidopsise0
Compound
biotine1
Outcome
induction in gene transcription fails to occure1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“bio1 mutant of Arabidopsis”

✓ located verbatim in the source · abstract, characters 2597–2623 · show in text ↑
e1

“this induction in gene transcription fails to occur in seedlings that are depleted of biotin”

✓ located verbatim in the source · abstract, characters 3391–3483 · show in text ↑
Observationobservedreview summarymeasured

Claim · model-written summary

A second maize cisZOG gene was isolated.

Taxon
maizeZea mayse0
Gene
cisZOGe0
Outcome
a second maize cisZOG genee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“a second maize cisZOG gene”

✓ located verbatim in the source · abstract, characters 4584–4610 · show in text ↑
Observationobservedreview summarymeasured

Claim · model-written summary

cisZOG1 expression was high in maize roots and kernels.

Taxon
maizeZea mayse1
Gene
cisZOG1e1
Outcome
expression of cisZOG1e1
Direction
highe1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“maize roots”

✓ located verbatim in the source · abstract, characters 4788–4799 · show in text ↑
e1

“The expression of cisZOG1 was high in maize roots and kernels”

✓ located verbatim in the source · abstract, characters 4750–4811 · show in text ↑
Observationobservedreview summarymeasured

Claim · model-written summary

cisZOG2 expression was high in roots but low in kernels.

Taxon
maizeZea mayse0
Gene
cisZOG2e1
Outcome
cisZOG2 expressione1
Direction
high in roots but low in kernelse1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“maize tissues”

✓ located verbatim in the source · abstract, characters 4735–4748 · show in text ↑
e1

“cisZOG2 expression was high in roots but low in kernels”

✓ located verbatim in the source · abstract, characters 4821–4876 · show in text ↑
Observationobservedreview summarymeasured

Claim · model-written summary

cis-isomer O-glucosides were found in maize roots, young cobs and kernels.

Taxon
maizeZea mayse0
Outcome
O-glucosides of cis-isomers were found in roots, young cobs, and kernelse1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“maize tissues”

✓ located verbatim in the source · abstract, characters 4735–4748 · show in text ↑
e1

“The O-glucosides of cis-isomers were found in roots, young cobs, and kernels”

✓ located verbatim in the source · abstract, characters 4878–4954 · show in text ↑
Observationobservedreview summarymeasured

Claim · model-written summary

cis-isomers were more prevalent in maize roots, stems and leaves.

Taxon
maizeZea mayse0
Outcome
cis-isomerse1
Direction
more prevalente1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“maize tissues”

✓ located verbatim in the source · abstract, characters 4735–4748 · show in text ↑
e1

“cis-isomers were more prevalent in roots, stems, and leaves”

✓ located verbatim in the source · abstract, characters 5069–5128 · show in text ↑
Observationobservedreview summarymeasured

Claim · model-written summary

trans-isomers were more abundant in maize kernels.

Taxon
maizeZea mayse0
Outcome
trans-isomerse1
Direction
more abundante1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“maize tissues”

✓ located verbatim in the source · abstract, characters 4735–4748 · show in text ↑
e1

“trans-isomers were more abundant in the kernels”

✓ located verbatim in the source · abstract, characters 5138–5185 · show in text ↑
Observationobservedreview summarymeasured

Claim · model-written summary

Yeast PDR5 was identified with specificity for tropane alkaloids.

Gene
yeast PDR5e1
Outcome
specificity for tropane alkaloidse1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana tabacum
Nicotiana tabacum · TaxonJom / Joachim Müllerchen · CC BY 2.5 · Wikimedia Commons ↗

Verbatim

e0

“tobacco (Nicotiana tabacum)”

✓ located verbatim in the source · abstract, characters 7549–7576 · show in text ↑
e1

“an ABC transporter (yeast PDR5) with specificity for tropane alkaloids was identified”

✓ located verbatim in the source · abstract, characters 7417–7502 · show in text ↑
Intervention effectobservedreview summarymeasured

Claim · model-written summary

Introducing PDR5 increased tropane alkaloid secretion from tobacco cells.

Treatment
PDR5 was transgenically introducede1
Gene
PDR5e1
Outcome
secretion of tropane alkaloidse1
Direction
increasede1

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana tabacum
Nicotiana tabacum · TaxonJom / Joachim Müllerchen · CC BY 2.5 · Wikimedia Commons ↗

Verbatim

e0

“tobacco (Nicotiana tabacum) cv Bright Yellow-2 (BY-2) cell lines”

✓ located verbatim in the source · abstract, characters 7549–7613 · show in text ↑
e1

“When PDR5 was transgenically introduced into tobacco (Nicotiana tabacum) cv Bright Yellow-2 (BY-2) cell lines, the secretion of tropane alkaloids from the plant cells was increased”

✓ located verbatim in the source · abstract, characters 7504–7684 · show in text ↑