Paper · 2023 · BMC Plant Biology

Combined transcriptomic and metabolomic analyses of high temperature stress response of quinoa seedlings

Heng Xie; Ping Zhang; Chunhe Jiang; et al.

7
claims
16
verbatim quotes
37
citations
2
research areas
✓
Open access · cc-by

Abstract

BACKGROUND: Quinoa (Chenopodium quinoa Willd.) originates in high altitude areas, such as the Andes, and has some inherent characteristics of cold, drought, and salinity tolerance, but is sensitive to high temperature. RESULTS: To gain insight into the response mechanism of quinoa to high temperature stress, we conducted an extensive targeted metabolomic study of two cultivars, Dianli-3101 and Dianli-3051, along with a combined transcriptome analysis. A total of 794 metabolites and 54,200 genes were detected, in which the genes related to photosynthesis were found down-regulated at high temperatures, and two metabolites, lipids and flavonoids, showed the largest changes in differential accumulation. Further analysis of the Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway and transcription factors revealed that quinoa inhibits photosynthesis at high temperatures, and the possible strategies being used for high temperature stress management are regulation of heat stress transcription factors (HSFs) to obtain heat tolerance, and regulation of purine metabolism to enhance stress signals for rapid response to high temperature stress. The tolerant genotype could have an enhanced response through lower purine levels. The induction of the stress response could be mediated by HSF transcription factors. The results of this study may provide theoretical references for understanding the response mechanism of quinoa to high temperature stress, and for screening potential high temperature tolerant target genes and high temperature tolerant strains. CONCLUSIONS: These findings reveal the regulation of the transcription factor family HSF and the purinergic pathway in response to high temperature stress to improve quinoa varieties with high temperature tolerance.

Abstract from the paper’s OpenAlex record; open copy licensed cc-by. Read at the source ↗

The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 7

Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Genes related to photosynthesis were down-regulated in quinoa seedlings at high temperatures.

Material
Dianli-3101 and Dianli-3051e0
Treatment
high temperaturese1
Outcome
genes related to photosynthesise1
Direction
down-regulatede1

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Chenopodium quinoa
Chenopodium quinoa · TaxonKurt Stueber · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“quinoa seedlings”

✓ located verbatim in the source · title, characters 88–104 · show in text ↑
e0

“we conducted an extensive targeted metabolomic study of two cultivars, Dianli-3101 and Dianli-3051”

✓ located verbatim in the source · abstract, characters 310–408 · show in text ↑
e1

“the genes related to photosynthesis were found down-regulated at high temperatures”

✓ located verbatim in the source · abstract, characters 524–606 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Lipids and flavonoids showed the largest changes in differential accumulation in quinoa seedlings.

Material
Dianli-3101 and Dianli-3051e0
Outcome
differential accumulatione2
Qualifier
largest changese2

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Chenopodium quinoa
Chenopodium quinoa · TaxonKurt Stueber · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“quinoa seedlings”

✓ located verbatim in the source · title, characters 88–104 · show in text ↑
e0

“we conducted an extensive targeted metabolomic study of two cultivars, Dianli-3101 and Dianli-3051”

✓ located verbatim in the source · abstract, characters 310–408 · show in text ↑
e2

“two metabolites, lipids and flavonoids, showed the largest changes in differential accumulation”

✓ located verbatim in the source · abstract, characters 612–707 · show in text ↑
Intervention effectauthor interpretationoriginal resultnegativemeasured

Claim · model-written summary

Quinoa photosynthesis is inhibited at high temperatures.

Treatment
high temperaturese7
Outcome
photosynthesise7
Direction
inhibitse7

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Chenopodium quinoa
Chenopodium quinoa · TaxonKurt Stueber · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“quinoa seedlings”

✓ located verbatim in the source · title, characters 88–104 · show in text ↑
e7

“quinoa inhibits photosynthesis at high temperatures”

✓ located verbatim in the source · abstract, characters 828–879 · show in text ↑
Mechanismhypothesisoriginal resultmeasured

Claim · model-written summary

Regulation of heat stress transcription factors (HSFs) may give heat tolerance in quinoa.

Gene
heat stress transcription factors (HSFs)e3
Outcome
heat tolerancee3

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Chenopodium quinoa
Chenopodium quinoa · TaxonKurt Stueber · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“quinoa seedlings”

✓ located verbatim in the source · title, characters 88–104 · show in text ↑
e3

“regulation of heat stress transcription factors (HSFs) to obtain heat tolerance”

✓ located verbatim in the source · abstract, characters 963–1042 · show in text ↑
Mechanismhypothesisoriginal resultmeasured

Claim · model-written summary

Regulation of purine metabolism may enhance stress signals for rapid response to high temperature in quinoa.

Compound
purinee4
Outcome
rapid response to high temperature stresse4

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Chenopodium quinoa
Chenopodium quinoa · TaxonKurt Stueber · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“quinoa seedlings”

✓ located verbatim in the source · title, characters 88–104 · show in text ↑
e4

“regulation of purine metabolism to enhance stress signals for rapid response to high temperature stress”

✓ located verbatim in the source · abstract, characters 1048–1151 · show in text ↑
Associationhypothesisoriginal resultpositivemeasured

Claim · model-written summary

The tolerant genotype has lower purine levels than the sensitive one.

Material
tolerant genotypee5
Compound
purinee5
Outcome
purine levelse5
Direction
lowere5

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Chenopodium quinoa
Chenopodium quinoa · TaxonKurt Stueber · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“quinoa seedlings”

✓ located verbatim in the source · title, characters 88–104 · show in text ↑
e5

“The tolerant genotype could have an enhanced response through lower purine levels”

✓ located verbatim in the source · abstract, characters 1153–1234 · show in text ↑
Mechanismhypothesisoriginal resultmeasured

Claim · model-written summary

Induction of the stress response may be mediated by HSF transcription factors.

Gene
HSF transcription factorse6
Outcome
induction of the stress responsee6

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Chenopodium quinoa
Chenopodium quinoa · TaxonKurt Stueber · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“quinoa seedlings”

✓ located verbatim in the source · title, characters 88–104 · show in text ↑
e6

“The induction of the stress response could be mediated by HSF transcription factors”

✓ located verbatim in the source · abstract, characters 1236–1319 · show in text ↑

heat · molecular: expression · Chenopodium quinoa (quinoa)Positive and negative results

2 papers: 1 positive, 1 negative or no effect

1 in the opposite direction

  1. positive
See all 2 papers →

heat · physiology: photosynthesis · Chenopodium quinoa (quinoa)Results agree

3 papers: 0 positive, 3 negative or no effect

2 papers in the same direction as this paper

  1. negative
  2. negative
See all 3 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.