Paper · 2023 · International Journal of Molecular Sciences

Transcriptome Sequencing Analysis of Root in Soybean Responding to Mn Poisoning

Ying Liu; Yuhu Pan; Jianyu Li; et al.

11
claims
22
verbatim quotes
24
citations
2
research areas
✓
Open access · cc-by

Abstract

Manganese (Mn) is among one of the essential trace elements for normal plant development; however, excessive Mn can cause plant growth and development to be hindered. Nevertheless, the regulatory mechanisms of plant root response to Mn poisoning remain unclear. In the present study, results revealed that the root growth was inhibited when exposed to Mn poisoning. Physiological results showed that the antioxidase enzyme activities (peroxidase, superoxide dismutase, ascorbate peroxidase, and catalase) and the proline, malondialdehyde, and soluble sugar contents increased significantly under Mn toxicity stress (100 μM Mn), whereas the soluble protein and four hormones' (indolebutyric acid, abscisic acid, indoleacetic acid, and gibberellic acid 3) contents decreased significantly. In addition, the Mn, Fe, Na, Al, and Se contents in the roots increased significantly, whereas those of Mg, Zn, and K decreased significantly. Furthermore, RNA sequencing (RNA-seq) analysis was used to test the differentially expressed genes (DEGs) of soybean root under Mn poisoning. The results found 45,274 genes in soybean root and 1430 DEGs under Mn concentrations of 5 (normal) and 100 (toxicity) μM. Among these DEGs, 572 were upregulated and 858 were downregulated, indicating that soybean roots may initiate complex molecular regulatory mechanisms on Mn poisoning stress. The results of quantitative RT-PCR indicated that many DEGs were upregulated or downregulated markedly in the roots, suggesting that the regulation of DEGs may be complex. Therefore, the regulatory mechanism of soybean root on Mn toxicity stress is complicated. Present results lay the foundation for further study on the molecular regulation mechanism of function genes involved in regulating Mn tolerance traits in soybean roots.

Abstract from the paper’s OpenAlex record; open copy licensed cc-by. Read at the source ↗

The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 11

Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Manganese poisoning inhibited root growth.

Taxon
SoybeanGlycine maxt0
Treatment
Mn poisoninge0
Outcome
root growthe0
Direction
inhibitede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

t0

“Soybean”

✓ located verbatim in the source · title, characters 45–52 · show in text ↑
e0

“root growth was inhibited when exposed to Mn poisoning.”

✓ located verbatim in the source · abstract, characters 310–365 · show in text ↑
Intervention effectobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

Antioxidase enzyme activities rose significantly under 100 μM Mn.

Taxon
SoybeanGlycine maxt0
Treatment
Mn toxicity stress (100 μM Mn)e0
Outcome
antioxidase enzyme activities (peroxidase, superoxide dismutase, ascorbate peroxidase, and catalase)e0
Direction
increasede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

t0

“Soybean”

✓ located verbatim in the source · title, characters 45–52 · show in text ↑
e0

“antioxidase enzyme activities (peroxidase, superoxide dismutase, ascorbate peroxidase, and catalase) and the proline, malondialdehyde, and soluble sugar contents increased significantly under Mn toxicity stress (100 μM Mn)”

✓ located verbatim in the source · abstract, characters 404–626 · show in text ↑
Intervention effectobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

Proline, malondialdehyde and soluble sugar increased significantly.

Taxon
SoybeanGlycine maxt0
Treatment
Mn toxicity stress (100 μM Mn)e0
Outcome
proline, malondialdehyde, and soluble sugar contentse0
Direction
increasede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

t0

“Soybean”

✓ located verbatim in the source · title, characters 45–52 · show in text ↑
e0

“proline, malondialdehyde, and soluble sugar contents increased significantly under Mn toxicity stress (100 μM Mn)”

✓ located verbatim in the source · abstract, characters 513–626 · show in text ↑
Observationobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

Soluble protein and four hormone contents decreased significantly.

Taxon
SoybeanGlycine maxt0
Outcome
soluble protein and four hormones' (indolebutyric acid, abscisic acid, indoleacetic acid, and gibberellic acid 3) contentse0
Direction
decreasede0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

t0

“Soybean”

✓ located verbatim in the source · title, characters 45–52 · show in text ↑
e0

“soluble protein and four hormones' (indolebutyric acid, abscisic acid, indoleacetic acid, and gibberellic acid 3) contents decreased significantly.”

✓ located verbatim in the source · abstract, characters 640–787 · show in text ↑
Observationobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

Root Mn, Fe, Na, Al and Se content increased significantly.

Taxon
SoybeanGlycine maxt0
Outcome
Mn, Fe, Na, Al, and Se contents in the rootse0
Direction
increasede0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

t0

“Soybean”

✓ located verbatim in the source · title, characters 45–52 · show in text ↑
e0

“Mn, Fe, Na, Al, and Se contents in the roots increased significantly”

✓ located verbatim in the source · abstract, characters 805–873 · show in text ↑
Observationobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

Root Mg, Zn and K contents decreased significantly.

Taxon
SoybeanGlycine maxt0
Outcome
Mg, Zn, and Ke0
Direction
decreasede0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

t0

“Soybean”

✓ located verbatim in the source · title, characters 45–52 · show in text ↑
e0

“those of Mg, Zn, and K decreased significantly”

✓ located verbatim in the source · abstract, characters 883–929 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Soybean roots had 45,274 detected genes.

Taxon
SoybeanGlycine maxt0
Outcome
genes in soybean roote0
Value
45,274e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

t0

“Soybean”

✓ located verbatim in the source · title, characters 45–52 · show in text ↑
e0

“The results found 45,274 genes in soybean root”

✓ located verbatim in the source · abstract, characters 1073–1119 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

There were 1430 DEGs between 5 and 100 μM Mn.

Taxon
SoybeanGlycine maxt0
Treatment
100 (toxicity) μMe0
Outcome
DEGse0
Value
1430e0
Comparator
5 (normal)e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

t0

“Soybean”

✓ located verbatim in the source · title, characters 45–52 · show in text ↑
e0

“1430 DEGs under Mn concentrations of 5 (normal) and 100 (toxicity) μM”

✓ located verbatim in the source · abstract, characters 1124–1193 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Of the DEGs, 572 were upregulated.

Taxon
SoybeanGlycine maxt0
Outcome
DEGse0
Direction
upregulatede0
Value
572e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

t0

“Soybean”

✓ located verbatim in the source · title, characters 45–52 · show in text ↑
e0

“Among these DEGs, 572 were upregulated”

✓ located verbatim in the source · abstract, characters 1195–1233 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Of the DEGs, 858 were downregulated.

Taxon
SoybeanGlycine maxt0
Outcome
downregulatede0
Value
858e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

t0

“Soybean”

✓ located verbatim in the source · title, characters 45–52 · show in text ↑
e0

“858 were downregulated”

✓ located verbatim in the source · abstract, characters 1238–1260 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

RT-PCR indicated many DEGs were markedly upregulated or downregulated.

Taxon
SoybeanGlycine maxt0
Outcome
DEGse0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

t0

“Soybean”

✓ located verbatim in the source · title, characters 45–52 · show in text ↑
e0

“many DEGs were upregulated or downregulated markedly in the roots”

✓ located verbatim in the source · abstract, characters 1419–1484 · show in text ↑

manganese atom · growth · Glycine max (soybean)Results differ

31 papers: 13 positive, 18 negative or no effect

17 papers in the same direction as this paper · 13 in the opposite direction

  1. negative
  2. positive
  3. positive

27 papers more in this group

See all 31 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.