Paper · 2024 · Applied Microbiology and Biotechnology

Using multi-omics to explore the effect of Bacillus velezensis SAAS-63 on resisting nutrient stress in lettuce

Yinshuang Bai; Ke Song; Mengxiang Gao; et al.

9
claims
18
verbatim quotes
10
citations
2
research areas
✓
Open access · cc-by

Abstract

To avoid the unreasonable use of chemical fertilizer, an environmentally friendly means of improving soil fertility is required. This study explored the role of the plant growth-promoting rhizosphere bacteria (PGPR) strain Bacillus velezensis SAAS-63 in improving nutrient stress in lettuce. Compared with no inoculation, B. velezensis SAAS-63 inoculants exhibited significantly increased fresh weight, root length, and shoot height under nutrient deficiency, as well as improved antioxidant activities and proline contents. The exogenous addition of B. velezensis SAAS-63 also significantly increased the accumulation of macroelements and micronutrients in lettuce. To elucidate the resistance mechanisms induced by B. velezensis SAAS-63 under nutrient stress, high-throughput sequencing and multi-omics analysis were performed. Inoculation with B. velezensis SAAS-63 altered the microbial community of the rhizosphere and increased the relative abundances of Streptomyces, Actinoallomurus, Verrucomicrobia, and Chloroflexi. It is worth noting that the inoculant SAAS-63 can affect plant rhizosphere metabolism. The inoculant changed the metabolic flow of phenylpropanoid metabolic pathway under nutrient deficiency and promoted phenylalanine to participate more in the synthesis of lignin precursors and coumarin substances by inhibiting the synthesis of flavone and isoflavone, thus improving plant resistance. This study showed that the addition of inoculant SAAS-63 could help plants recruit microorganisms to decompose and utilize trehalose and re-established the carbon metabolism of the plant rhizosphere. Additionally, microbes were found to be closely related to the accumulation of metabolites based on correlation analysis. The results indicated that the addition of PGPRs has an important role in regulating soil rhizosphere microbes and metabolism, providing valuable information for understanding how PGPRs affect complex biological processes and enhance plant adaptation to nutrient deficiency. KEY POINTS: • Inoculation with SAAS-63 significantly promoted plant growth under nutrient-deficient conditions • Inoculation with SAAS-63 affected rhizosphere microbial diversity and community structure • Inoculation with SAAS-63 affected plant rhizosphere metabolism and induced plants to synthesize substances that resist stress.

Abstract from the paper’s OpenAlex record; open copy licensed cc-by. Read at the source ↗

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Claims 9

Intervention effectobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

Under nutrient deficiency, SAAS-63 inoculation significantly increased fresh weight, root length and shoot height of lettuce compared with no inoculation.

Taxon
lettuceLactuca sativat1
Treatment
B. velezensis SAAS-63 inoculantse1
Interactor
Bacillus velezensis SAAS-63Bacillus velezensist1symbiont
Outcome
fresh weight, root length, and shoot heighte1
Direction
increasede1
Comparator
no inoculatione1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Lactuca sativa
Lactuca sativa · Taxonen:User:Geographer · CC BY 1.0 · Wikimedia Commons ↗
Bacillus velezensis
Bacillus velezensis · InteractorMarinka Pavlova · CC BY 4.0 · Wikimedia Commons ↗

Verbatim

t1

“the effect of Bacillus velezensis SAAS-63 on resisting nutrient stress in lettuce”

✓ located verbatim in the source · title, characters 29–110 · show in text ↑
e1

“Compared with no inoculation, B. velezensis SAAS-63 inoculants exhibited significantly increased fresh weight, root length, and shoot height under nutrient deficiency, as well as improved antioxidant activities and proline contents”

✓ located verbatim in the source · abstract, characters 292–523 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Under nutrient deficiency, SAAS-63 inoculation improved antioxidant activities and proline contents of lettuce compared with no inoculation.

Taxon
lettuceLactuca sativat1
Treatment
B. velezensis SAAS-63 inoculantse1
Interactor
Bacillus velezensis SAAS-63Bacillus velezensist1symbiont
Outcome
antioxidant activities and proline contentse1
Direction
improvede1
Comparator
no inoculatione1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Lactuca sativa
Lactuca sativa · Taxonen:User:Geographer · CC BY 1.0 · Wikimedia Commons ↗
Bacillus velezensis
Bacillus velezensis · InteractorMarinka Pavlova · CC BY 4.0 · Wikimedia Commons ↗

Verbatim

t1

“the effect of Bacillus velezensis SAAS-63 on resisting nutrient stress in lettuce”

✓ located verbatim in the source · title, characters 29–110 · show in text ↑
e1

“Compared with no inoculation, B. velezensis SAAS-63 inoculants exhibited significantly increased fresh weight, root length, and shoot height under nutrient deficiency, as well as improved antioxidant activities and proline contents”

✓ located verbatim in the source · abstract, characters 292–523 · show in text ↑
Intervention effectobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

Exogenous SAAS-63 significantly increased the accumulation of macroelements and micronutrients in lettuce.

Taxon
lettuceLactuca sativat1
Treatment
exogenous addition of B. velezensis SAAS-63e2
Interactor
Bacillus velezensis SAAS-63Bacillus velezensist1symbiont
Outcome
accumulation of macroelements and micronutrientse2
Direction
increasede2

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Lactuca sativa
Lactuca sativa · Taxonen:User:Geographer · CC BY 1.0 · Wikimedia Commons ↗
Bacillus velezensis
Bacillus velezensis · InteractorMarinka Pavlova · CC BY 4.0 · Wikimedia Commons ↗

Verbatim

t1

“the effect of Bacillus velezensis SAAS-63 on resisting nutrient stress in lettuce”

✓ located verbatim in the source · title, characters 29–110 · show in text ↑
e2

“The exogenous addition of B. velezensis SAAS-63 also significantly increased the accumulation of macroelements and micronutrients in lettuce”

✓ located verbatim in the source · abstract, characters 525–665 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

SAAS-63 inoculation increased the relative abundances of Streptomyces, Actinoallomurus and Verrucomicrobia in the lettuce rhizosphere.

Taxon
lettuceLactuca sativat1
Treatment
Inoculation with B. velezensis SAAS-63e3
Interactor
Streptomyces, Actinoallomurus, VerrucomicrobiaStreptomycesVerrucomicrobiotaActinoallomuruse3symbiont
Outcome
relative abundances of Streptomyces, Actinoallomurus, Verrucomicrobiae3
Direction
increasede3

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Lactuca sativa
Lactuca sativa · Taxonen:User:Geographer · CC BY 1.0 · Wikimedia Commons ↗
Streptomyces
Streptomyces · Interactor · picture of the genus (one of its species)Public domain · Wikimedia Commons ↗

Verbatim

t1

“the effect of Bacillus velezensis SAAS-63 on resisting nutrient stress in lettuce”

✓ located verbatim in the source · title, characters 29–110 · show in text ↑
e3

“Inoculation with B. velezensis SAAS-63 altered the microbial community of the rhizosphere and increased the relative abundances of Streptomyces, Actinoallomurus, Verrucomicrobia, and Chloroflexi”

✓ located verbatim in the source · abstract, characters 830–1024 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

SAAS-63 inoculation increased the relative abundance of Chloroflexi in the lettuce rhizosphere.

Taxon
lettuceLactuca sativat1
Treatment
Inoculation with B. velezensis SAAS-63e3
Interactor
ChloroflexiChloroflexotae3symbiont
Outcome
Chloroflexie3
Direction
increasede3

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Lactuca sativa
Lactuca sativa · Taxonen:User:Geographer · CC BY 1.0 · Wikimedia Commons ↗

Verbatim

t1

“the effect of Bacillus velezensis SAAS-63 on resisting nutrient stress in lettuce”

✓ located verbatim in the source · title, characters 29–110 · show in text ↑
e3

“Inoculation with B. velezensis SAAS-63 altered the microbial community of the rhizosphere and increased the relative abundances of Streptomyces, Actinoallomurus, Verrucomicrobia, and Chloroflexi”

✓ located verbatim in the source · abstract, characters 830–1024 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

The inoculant promoted phenylalanine use in the synthesis of lignin precursors and coumarin substances under nutrient deficiency.

Taxon
lettuceLactuca sativat1
Treatment
The inoculante4
Compound
phenylalaninee4
Outcome
synthesis of lignin precursors and coumarin substancese4
Direction
promotede4

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Lactuca sativa
Lactuca sativa · Taxonen:User:Geographer · CC BY 1.0 · Wikimedia Commons ↗

Verbatim

t1

“the effect of Bacillus velezensis SAAS-63 on resisting nutrient stress in lettuce”

✓ located verbatim in the source · title, characters 29–110 · show in text ↑
e4

“The inoculant changed the metabolic flow of phenylpropanoid metabolic pathway under nutrient deficiency and promoted phenylalanine to participate more in the synthesis of lignin precursors and coumarin substances by inhibiting the synthesis of flavone and isoflavone”

✓ located verbatim in the source · abstract, characters 1113–1379 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

The inoculant inhibited the synthesis of flavone and isoflavone in lettuce under nutrient deficiency.

Taxon
lettuceLactuca sativat1
Treatment
The inoculante4
Outcome
synthesis of flavone and isoflavonee4
Direction
inhibitinge4

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Lactuca sativa
Lactuca sativa · Taxonen:User:Geographer · CC BY 1.0 · Wikimedia Commons ↗

Verbatim

t1

“the effect of Bacillus velezensis SAAS-63 on resisting nutrient stress in lettuce”

✓ located verbatim in the source · title, characters 29–110 · show in text ↑
e4

“The inoculant changed the metabolic flow of phenylpropanoid metabolic pathway under nutrient deficiency and promoted phenylalanine to participate more in the synthesis of lignin precursors and coumarin substances by inhibiting the synthesis of flavone and isoflavone”

✓ located verbatim in the source · abstract, characters 1113–1379 · show in text ↑
Mechanismauthor interpretationoriginal resultbasis n/a

Claim · model-written summary

SAAS-63 may help lettuce plants recruit microbes that use trehalose, re-establishing rhizosphere carbon metabolism.

Taxon
lettuceLactuca sativat1
Treatment
inoculant SAAS-63e6
Compound
trehalosee6
Outcome
carbon metabolism of the plant rhizospheree6

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Lactuca sativa
Lactuca sativa · Taxonen:User:Geographer · CC BY 1.0 · Wikimedia Commons ↗

Verbatim

t1

“the effect of Bacillus velezensis SAAS-63 on resisting nutrient stress in lettuce”

✓ located verbatim in the source · title, characters 29–110 · show in text ↑
e6

“the addition of inoculant SAAS-63 could help plants recruit microorganisms to decompose and utilize trehalose and re-established the carbon metabolism of the plant rhizosphere”

✓ located verbatim in the source · abstract, characters 1437–1612 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Microbes were closely related to the accumulation of metabolites by correlation analysis.

Taxon
lettuceLactuca sativat1
Interactor
microbese5symbiont
Outcome
accumulation of metabolitese5

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Lactuca sativa
Lactuca sativa · Taxonen:User:Geographer · CC BY 1.0 · Wikimedia Commons ↗

Verbatim

t1

“the effect of Bacillus velezensis SAAS-63 on resisting nutrient stress in lettuce”

✓ located verbatim in the source · title, characters 29–110 · show in text ↑
e5

“microbes were found to be closely related to the accumulation of metabolites based on correlation analysis”

✓ located verbatim in the source · abstract, characters 1628–1734 · show in text ↑

inoculation · molecular: metabolites · Lactuca sativa (garden lettuce)Positive and negative results

17 papers: 16 positive, 1 negative or no effect

15 papers in the same direction as this paper · 1 in the opposite direction

  1. negative
  2. positive
  3. positive

13 papers more in this group

See all 17 papers →

inoculation · growth · Lactuca sativa (garden lettuce)Positive and negative results

111 papers: 97 positive, 14 negative or no effect

96 papers in the same direction as this paper · 12 in the opposite direction · 2 reporting no difference from an alternative

  1. no effect
  2. negative
  3. negative

107 papers more in this group

See all 111 papers →

inoculation · physiology: osmolytes · Lactuca sativa (garden lettuce)Results agree

2 papers: 2 positive, 0 negative or no effect

1 paper in the same direction as this paper

  1. positive
See all 2 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.