Paper · 2024 · Frontiers in Plant Science

A single amino acid substitution in the AAA-type ATPase LRD6-6 activates immune responses but decreases grain quality in rice

Junjie Yin; Cheng Zhang; Qianyu Zhang; et al.

8
claims
19
verbatim quotes
4
citations
3
research areas
✓
Open access · cc-by

Abstract

Plant spotted leaf ( spl ) mutants are useful to reveal the regulatory mechanisms of immune responses. Thus, in crop plants, their agronomic traits, especially the grain quality are usually ignored. Here, we characterized a rice spl mutant named spl-A ( spotted leaf mutant from A814 ) that shows autoimmunity, broad-spectrum disease resistance and growth deterioration including decreased rice quality. A single nucleotide mutation of C1144T, which leads to change of the 382 nd proline to serine, in the gene encoding the ATPases associated with diverse cellular activities (AAA)-type ATPase LRD6-6 is responsible for the phenotype of the spl-A mutant. Mechanistically, this mutation impairs LRD6-6 ATPase activity and disrupts its interaction with endosomal sorting complex required for transport (ESCRT)-III subunits OsSNF7.1/7.2/7.3. And thus, leading to compromise of multivesicular bodies (MVBs)-mediated vesicle trafficking and accumulation of ubiquitinated proteins in both leaves and seeds of spl-A . Therefore, the immune response of spl-A is activated, and the growth and grain quality are deteriorated. Our study identifies a new amino acid residue that important for LRD6-6 and provides new insight into our understanding of how MVBs-mediated vesicle trafficking regulates plant immunity and growth, including grain quality in rice.

Abstract from the paper’s OpenAlex record; open copy licensed cc-by. Read at the source ↗

The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 8

Observationobservedoriginal resultmixedmeasured

Claim · model-written summary

The spl-A rice mutant shows autoimmunity, broad-spectrum disease resistance and growth deterioration.

Material
spl-Ae1
Outcome
autoimmunity, broad-spectrum disease resistance and growth deterioratione2

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e1

“a rice spl mutant named spl-A ( spotted leaf mutant from A814 )”

✓ located verbatim in the source · abstract, characters 222–285 · show in text ↑
e2

“shows autoimmunity, broad-spectrum disease resistance and growth deterioration”

✓ located verbatim in the source · abstract, characters 291–369 · show in text ↑
Associationobservedoriginal resultnegativemeasured

Claim · model-written summary

The spl-A rice mutant shows decreased rice quality.

Material
spl-Ae1
Outcome
rice qualitye3
Direction
decreasede3

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e1

“a rice spl mutant named spl-A ( spotted leaf mutant from A814 )”

✓ located verbatim in the source · abstract, characters 222–285 · show in text ↑
e3

“growth deterioration including decreased rice quality”

✓ located verbatim in the source · abstract, characters 349–402 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

The C1144T mutation in LRD6-6 changes the 382nd proline to serine.

Gene
LRD6-6e4
Outcome
change of the 382 nd proline to serinee4
Qualifier
C1144Te4

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e1

“a rice spl mutant named spl-A ( spotted leaf mutant from A814 )”

✓ located verbatim in the source · abstract, characters 222–285 · show in text ↑
e4

“A single nucleotide mutation of C1144T, which leads to change of the 382 nd proline to serine, in the gene encoding the ATPases associated with diverse cellular activities (AAA)-type ATPase LRD6-6”

✓ located verbatim in the source · abstract, characters 404–600 · show in text ↑
Mechanismobservedoriginal resultmeasured

Claim · model-written summary

The C1144T mutation in LRD6-6 is responsible for the phenotype of the spl-A mutant.

Gene
LRD6-6e4
Outcome
phenotype of the spl-A mutante5
Qualifier
C1144Te4

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e1

“a rice spl mutant named spl-A ( spotted leaf mutant from A814 )”

✓ located verbatim in the source · abstract, characters 222–285 · show in text ↑
e4

“A single nucleotide mutation of C1144T, which leads to change of the 382 nd proline to serine, in the gene encoding the ATPases associated with diverse cellular activities (AAA)-type ATPase LRD6-6”

✓ located verbatim in the source · abstract, characters 404–600 · show in text ↑
e5

“is responsible for the phenotype of the spl-A mutant”

✓ located verbatim in the source · abstract, characters 601–653 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

The mutation impairs LRD6-6 ATPase activity.

Treatment
this mutatione6
Gene
LRD6-6e6
Outcome
ATPase activitye6
Direction
impairse6

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e1

“a rice spl mutant named spl-A ( spotted leaf mutant from A814 )”

✓ located verbatim in the source · abstract, characters 222–285 · show in text ↑
e6

“this mutation impairs LRD6-6 ATPase activity”

✓ located verbatim in the source · abstract, characters 672–716 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

The mutation disrupts the interaction of LRD6-6 with ESCRT-III subunits OsSNF7.1/7.2/7.3.

Treatment
this mutatione6
Gene
OsSNF7.1/7.2/7.3e7
Outcome
interactione7
Direction
disruptse7

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e1

“a rice spl mutant named spl-A ( spotted leaf mutant from A814 )”

✓ located verbatim in the source · abstract, characters 222–285 · show in text ↑
e6

“this mutation impairs LRD6-6 ATPase activity”

✓ located verbatim in the source · abstract, characters 672–716 · show in text ↑
e7

“disrupts its interaction with endosomal sorting complex required for transport (ESCRT)-III subunits OsSNF7.1/7.2/7.3”

✓ located verbatim in the source · abstract, characters 721–837 · show in text ↑
Mechanismauthor interpretationoriginal resultnegativemeasured

Claim · model-written summary

The mutation compromises MVB-mediated vesicle trafficking in rice.

Treatment
this mutatione6
Outcome
multivesicular bodies (MVBs)-mediated vesicle traffickinge3

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e1

“a rice spl mutant named spl-A ( spotted leaf mutant from A814 )”

✓ located verbatim in the source · abstract, characters 222–285 · show in text ↑
e6

“this mutation impairs LRD6-6 ATPase activity”

✓ located verbatim in the source · abstract, characters 672–716 · show in text ↑
e3

“leading to compromise of multivesicular bodies (MVBs)-mediated vesicle trafficking”

✓ located verbatim in the source · abstract, characters 849–931 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Ubiquitinated proteins accumulate in both leaves and seeds of spl-A.

Material
spl-Ae7
Organ / stage
both leaves and seedse7
Outcome
accumulation of ubiquitinated proteinse7

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e1

“a rice spl mutant named spl-A ( spotted leaf mutant from A814 )”

✓ located verbatim in the source · abstract, characters 222–285 · show in text ↑
e7

“accumulation of ubiquitinated proteins in both leaves and seeds of spl-A”

✓ located verbatim in the source · abstract, characters 936–1008 · show in text ↑

loss of function · physiology: enzyme activity · Oryza sativa (rice)Positive and negative results

9 papers: 3 positive, 6 negative or no effect

5 papers in the same direction as this paper · 3 in the opposite direction

  1. positive
  2. positive
  3. positive

5 papers more in this group

See all 9 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.