Paper · 2024 · Agronomy

Genome-Wide Identification of Epidermal Pattern Factor (EPF) Gene Family in Potato and Functional Characterization of StEPF4 in Regulating Drought Stress

Run Qiao; Jiangwei Yang; Yurong Deng; et al.

11
claims
21
verbatim quotes
3
citations
3
research areas
✓
Open access · cc-by

Abstract

Plants require adequate water for growth, development, and reproduction. Peptides play a key role in plant growth and development and act in a similar manner to plant hormones. However, only a few peptides have been identified to play a role in abiotic stress tolerance in potato. In this study, we identified fourteen members of the epidermal patterning factor (EPF) family in potato, which were designated as StEPF1-14 according to their chromosomal locations. We also conducted a comprehensive analysis of their chromosomal distribution, gene structures, physicochemical properties, phylogenetic relationships, and tissue-specific expression patterns. RT-qPCR analysis revealed that the StEPF4 gene is significantly induced by drought stress, suggesting its potential role as a negative regulator in the plant’s response to drought. Furthermore, multiple cis-regulatory elements associated with drought-responsive regulation were identified within the promoter region of the StEPF genes. Here, we isolated an EPF secreted Cys-rich small peptide StEPF4 from ‘Atlantic’ and explored its mechanism in plant response to drought stress. We found that StEPF4 was greatly induced by dehydration treatment in potato. To investigate its potential biological functions, StEPF4 was knocked down in potato. The StEPF4 knocked down lines (KdStEPF4) significantly decreased stomatal density, resulting in a decrease in the transpiration rate. KdStEPF4 lines maintained a higher photosynthetic rate and lowered the water loss rate of leaves compared with the control, resulting in increased drought resistance. Taken together, this study provides detailed information about StEPFs, and our findings also show that StEPF4 plays an essential role in regulating drought resistance by reducing stomatal density in potato.

Abstract from the paper’s OpenAlex record; open copy licensed cc-by. Read at the source ↗

The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 11

Observationobservedoriginal resultmeasured

Claim · model-written summary

Fourteen EPF family members were identified in potato.

Outcome
members of the epidermal patterning factor (EPF) familye1
Value
fourteene1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum tuberosum
Solanum tuberosum · TaxonScott Bauer, USDA ARS · Public domain · Wikimedia Commons ↗

Verbatim

t0

“Gene Family in Potato”

✓ located verbatim in the source · title, characters 61–82 · show in text ↑
e1

“we identified fourteen members of the epidermal patterning factor (EPF) family in potato”

✓ located verbatim in the source · abstract, characters 296–384 · show in text ↑
Intervention effectobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

StEPF4 is significantly induced by drought stress in potato.

Treatment
drought stresse1
Gene
StEPF4e1
Outcome
StEPF4 genee1
Direction
inducede1

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum tuberosum
Solanum tuberosum · TaxonScott Bauer, USDA ARS · Public domain · Wikimedia Commons ↗

Verbatim

t0

“Gene Family in Potato”

✓ located verbatim in the source · title, characters 61–82 · show in text ↑
e1

“RT-qPCR analysis revealed that the StEPF4 gene is significantly induced by drought stress”

✓ located verbatim in the source · abstract, characters 655–744 · show in text ↑
Mechanismhypothesisoriginal resultbasis n/a

Claim · model-written summary

StEPF4 may act as a negative regulator of the drought response in potato.

Gene
StEPF4e1
Outcome
induced by drought stresse1
Qualifier
negative regulatore1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum tuberosum
Solanum tuberosum · TaxonScott Bauer, USDA ARS · Public domain · Wikimedia Commons ↗

Verbatim

t0

“Gene Family in Potato”

✓ located verbatim in the source · title, characters 61–82 · show in text ↑
e1

“RT-qPCR analysis revealed that the StEPF4 gene is significantly induced by drought stress, suggesting its potential role as a negative regulator”

✓ located verbatim in the source · abstract, characters 655–799 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Multiple cis-regulatory elements associated with drought regulation were identified in the StEPF promoter regions.

Gene
StEPF genese1
Outcome
cis-regulatory elementse1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum tuberosum
Solanum tuberosum · TaxonScott Bauer, USDA ARS · Public domain · Wikimedia Commons ↗

Verbatim

t0

“Gene Family in Potato”

✓ located verbatim in the source · title, characters 61–82 · show in text ↑
e1

“multiple cis-regulatory elements associated with drought-responsive regulation were identified within the promoter region of the StEPF genes”

✓ located verbatim in the source · abstract, characters 849–989 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

StEPF4 is greatly induced by dehydration treatment in potato.

Treatment
dehydration treatmente1
Gene
StEPF4e1
Outcome
StEPF4e1
Direction
greatly inducede1

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum tuberosum
Solanum tuberosum · TaxonScott Bauer, USDA ARS · Public domain · Wikimedia Commons ↗

Verbatim

e1

“We found that StEPF4 was greatly induced by dehydration treatment in potato”

✓ located verbatim in the source · abstract, characters 1135–1210 · show in text ↑
Intervention effectobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

StEPF4 knockdown significantly decreased stomatal density in potato.

Treatment
StEPF4 knocked down linese1
Outcome
stomatal densitye1
Direction
decreasede1

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum tuberosum
Solanum tuberosum · TaxonScott Bauer, USDA ARS · Public domain · Wikimedia Commons ↗

Verbatim

t0

“Gene Family in Potato”

✓ located verbatim in the source · title, characters 61–82 · show in text ↑
e1

“The StEPF4 knocked down lines (KdStEPF4) significantly decreased stomatal density, resulting in a decrease in the transpiration rate”

✓ located verbatim in the source · abstract, characters 1298–1430 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

StEPF4 knockdown decreased transpiration rate in potato.

Treatment
StEPF4 knocked down linese1
Outcome
transpiration ratee1
Direction
decreasee1

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum tuberosum
Solanum tuberosum · TaxonScott Bauer, USDA ARS · Public domain · Wikimedia Commons ↗

Verbatim

t0

“Gene Family in Potato”

✓ located verbatim in the source · title, characters 61–82 · show in text ↑
e1

“The StEPF4 knocked down lines (KdStEPF4) significantly decreased stomatal density, resulting in a decrease in the transpiration rate”

✓ located verbatim in the source · abstract, characters 1298–1430 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

StEPF4 knockdown lines maintained a higher photosynthetic rate than the control.

Treatment
KdStEPF4 linese1
Outcome
photosynthetic ratee1
Direction
highere1
Comparator
controle1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum tuberosum
Solanum tuberosum · TaxonScott Bauer, USDA ARS · Public domain · Wikimedia Commons ↗

Verbatim

t0

“Gene Family in Potato”

✓ located verbatim in the source · title, characters 61–82 · show in text ↑
e1

“KdStEPF4 lines maintained a higher photosynthetic rate and lowered the water loss rate of leaves compared with the control, resulting in increased drought resistance”

✓ located verbatim in the source · abstract, characters 1432–1597 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

StEPF4 knockdown lines lowered leaf water loss rate compared with the control.

Treatment
KdStEPF4 linese1
Outcome
water loss ratee1
Direction
lowerede1
Comparator
controle1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum tuberosum
Solanum tuberosum · TaxonScott Bauer, USDA ARS · Public domain · Wikimedia Commons ↗

Verbatim

t0

“Gene Family in Potato”

✓ located verbatim in the source · title, characters 61–82 · show in text ↑
e1

“KdStEPF4 lines maintained a higher photosynthetic rate and lowered the water loss rate of leaves compared with the control, resulting in increased drought resistance”

✓ located verbatim in the source · abstract, characters 1432–1597 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

StEPF4 knockdown lines showed increased drought resistance compared with the control.

Treatment
KdStEPF4 linese1
Outcome
drought resistancee1
Direction
increasede1
Comparator
controle1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum tuberosum
Solanum tuberosum · TaxonScott Bauer, USDA ARS · Public domain · Wikimedia Commons ↗

Verbatim

t0

“Gene Family in Potato”

✓ located verbatim in the source · title, characters 61–82 · show in text ↑
e1

“KdStEPF4 lines maintained a higher photosynthetic rate and lowered the water loss rate of leaves compared with the control, resulting in increased drought resistance”

✓ located verbatim in the source · abstract, characters 1432–1597 · show in text ↑
Mechanismauthor interpretationoriginal resultbasis n/a

Claim · model-written summary

The authors conclude that StEPF4 regulates drought resistance in potato by reducing stomatal density.

Gene
StEPF4e1
Outcome
drought resistancee1
Qualifier
by reducing stomatal densitye1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum tuberosum
Solanum tuberosum · TaxonScott Bauer, USDA ARS · Public domain · Wikimedia Commons ↗

Verbatim

t0

“Gene Family in Potato”

✓ located verbatim in the source · title, characters 61–82 · show in text ↑
e1

“StEPF4 plays an essential role in regulating drought resistance by reducing stomatal density in potato”

✓ located verbatim in the source · abstract, characters 1702–1804 · show in text ↑