Paper · 2025 · BMC Plant Biology

ABA-induced alternative splicing drives transcriptomic reprogramming for drought tolerance in barley

Anna Collin; Hubert Matkowski; Ewa Sybilska; et al.

10
claims
20
verbatim quotes
15
citations
3
research areas
✓
Open access · cc-by

Abstract

BACKGROUND: Abscisic acid (ABA) is a phytohormone that mediates plant responses to drought stress by regulating stomatal conductance, gene expression, and photosynthetic efficiency. Although ABA-induced stress priming has shown the potential to improve drought tolerance, the molecular mechanisms underlying ABA pretreatment effects remain poorly understood. This study aimed to determine how ABA pre-treatment at the booting stage influences physiological and molecular responses to drought at the heading stage in barley. RESULTS: The ABA-treated plants exhibited earlier stomatal closure, increased expression of ABA-responsive genes (HvNCED1, HvBG8, and HvA22), and maintained higher chlorophyll levels under drought conditions. Photosynthetic parameters, including photosystem II activity, electron transport rate, and the number of active reaction centers, were preserved in ABA-pretreated plants compared with drought-only plants. Transcriptomic analysis revealed that ABA pre-treatment primed plants for faster activation of stress-responsive pathways, with enhanced expression of genes related to chromatin modifications, RNA metabolism, and ABA signaling during drought. Importantly, Alternative splicing (AS) and isoform switching were significantly amplified in ABA-pretreated plants, underscoring a unique molecular mechanism of ABA priming that enhances drought resilience. Post-stress recovery analysis revealed a greater number of differentially expressed genes (DEGs) and alternatively spliced transcripts (DAS) in ABA-pretreated plants, particularly those involved in chromatin organization and photosynthesis. Physiological analyses demonstrated that time- and dose-optimized ABA applications improved yield parameters, including grain weight and seed area, while mitigating spike sterility under drought conditions. CONCLUSIONS: This study demonstrates that ABA pretreatment enhances drought resilience in barley by triggering early stomatal closure, preserving chlorophyll content, and maintaining photosynthetic performance under water stress. At the molecular level, ABA priming accelerates stress-response pathways, promoting alternative splicing, isoform switching, and chromatin modifications that enable transcriptome plasticity. These processes facilitate faster recovery and sustain critical yield components, such as spike number and grain weight, when ABA is applied at optimized timing and concentrations. While large-scale ABA application poses challenges, this study provides a framework for breeding and agronomic strategies to mimic ABA effects, offering a practical path to enhance drought tolerance and yield stability in barley.

Abstract from the paper’s OpenAlex record; open copy licensed cc-by. Read at the source ↗

The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 10

Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

ABA-treated barley plants exhibited earlier stomatal closure under drought.

Treatment
ABA-treated plantse1
Outcome
stomatal closuree1
Direction
earliere1

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Hordeum vulgare
Hordeum vulgare · TaxonJackyM59 · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

t0

“barley”

✓ located verbatim in the source · title, characters 94–100 · show in text ↑
e1

“The ABA-treated plants exhibited earlier stomatal closure”

✓ located verbatim in the source · abstract, characters 533–590 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

ABA-treated barley plants showed increased expression of the ABA-responsive genes HvNCED1, HvBG8 and HvA22.

Treatment
ABA-treated plantse1
Gene
HvNCED1, HvBG8, and HvA22e1
Outcome
expression of ABA-responsive genese1
Direction
increasede1

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Hordeum vulgare
Hordeum vulgare · TaxonJackyM59 · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

t0

“barley”

✓ located verbatim in the source · title, characters 94–100 · show in text ↑
e1

“The ABA-treated plants exhibited earlier stomatal closure, increased expression of ABA-responsive genes (HvNCED1, HvBG8, and HvA22)”

✓ located verbatim in the source · abstract, characters 533–664 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

ABA-treated barley plants maintained higher chlorophyll levels under drought conditions.

Treatment
ABA-treated plantse1
Outcome
chlorophyll levelse1
Direction
highere1
Qualifier
under drought conditionse1

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Hordeum vulgare
Hordeum vulgare · TaxonJackyM59 · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

t0

“barley”

✓ located verbatim in the source · title, characters 94–100 · show in text ↑
e1

“The ABA-treated plants exhibited earlier stomatal closure, increased expression of ABA-responsive genes (HvNCED1, HvBG8, and HvA22), and maintained higher chlorophyll levels under drought conditions”

✓ located verbatim in the source · abstract, characters 533–731 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Photosystem II activity, electron transport rate and number of active reaction centers were preserved in ABA-pretreated barley plants compared with drought-only plants.

Treatment
ABA-pretreated plantse1
Outcome
photosystem II activity, electron transport rate, and the number of active reaction centerse1
Direction
preservede1
Comparator
drought-only plantse1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Hordeum vulgare
Hordeum vulgare · TaxonJackyM59 · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

t0

“barley”

✓ located verbatim in the source · title, characters 94–100 · show in text ↑
e1

“Photosynthetic parameters, including photosystem II activity, electron transport rate, and the number of active reaction centers, were preserved in ABA-pretreated plants compared with drought-only plants”

✓ located verbatim in the source · abstract, characters 733–936 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

ABA pre-treatment led to enhanced expression of genes related to chromatin modifications, RNA metabolism and ABA signaling during drought in barley.

Treatment
ABA pre-treatmente1
Outcome
expression of genes related to chromatin modifications, RNA metabolism, and ABA signalinge1
Direction
enhancede1

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Hordeum vulgare
Hordeum vulgare · TaxonJackyM59 · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

t0

“barley”

✓ located verbatim in the source · title, characters 94–100 · show in text ↑
e1

“ABA pre-treatment primed plants for faster activation of stress-responsive pathways, with enhanced expression of genes related to chromatin modifications, RNA metabolism, and ABA signaling during drought”

✓ located verbatim in the source · abstract, characters 976–1179 · show in text ↑
Intervention effectobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

Alternative splicing and isoform switching were significantly amplified in ABA-pretreated barley plants.

Treatment
ABA-pretreated plantse1
Outcome
Alternative splicing (AS) and isoform switchinge1
Direction
amplifiede1

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Hordeum vulgare
Hordeum vulgare · TaxonJackyM59 · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

t0

“barley”

✓ located verbatim in the source · title, characters 94–100 · show in text ↑
e1

“Alternative splicing (AS) and isoform switching were significantly amplified in ABA-pretreated plants”

✓ located verbatim in the source · abstract, characters 1194–1295 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Post-stress recovery analysis showed a greater number of differentially expressed genes and differentially alternatively spliced transcripts in ABA-pretreated plants.

Treatment
ABA-pretreated plantse1
Outcome
differentially expressed genes (DEGs) and alternatively spliced transcripts (DAS)e1
Direction
greatere1

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Hordeum vulgare
Hordeum vulgare · TaxonJackyM59 · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

t0

“barley”

✓ located verbatim in the source · title, characters 94–100 · show in text ↑
e1

“Post-stress recovery analysis revealed a greater number of differentially expressed genes (DEGs) and alternatively spliced transcripts (DAS) in ABA-pretreated plants”

✓ located verbatim in the source · abstract, characters 1388–1553 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Time- and dose-optimized ABA applications improved yield parameters including grain weight and seed area under drought.

Treatment
time- and dose-optimized ABA applicationse1
Outcome
yield parameters, including grain weight and seed areae1
Direction
improvede1

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Hordeum vulgare
Hordeum vulgare · TaxonJackyM59 · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

t0

“barley”

✓ located verbatim in the source · title, characters 94–100 · show in text ↑
e1

“time- and dose-optimized ABA applications improved yield parameters, including grain weight and seed area, while mitigating spike sterility under drought conditions”

✓ located verbatim in the source · abstract, characters 1670–1834 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Time- and dose-optimized ABA applications mitigated spike sterility under drought conditions in barley.

Treatment
time- and dose-optimized ABA applicationse1
Outcome
spike sterilitye1
Direction
mitigatinge1
Qualifier
under drought conditionse1

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Hordeum vulgare
Hordeum vulgare · TaxonJackyM59 · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

t0

“barley”

✓ located verbatim in the source · title, characters 94–100 · show in text ↑
e1

“time- and dose-optimized ABA applications improved yield parameters, including grain weight and seed area, while mitigating spike sterility under drought conditions”

✓ located verbatim in the source · abstract, characters 1670–1834 · show in text ↑
Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

ABA priming is proposed to accelerate stress-response pathways, promoting alternative splicing, isoform switching and chromatin modifications that enable transcriptome plasticity.

Treatment
ABA priminge1
Outcome
transcriptome plasticitye1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Hordeum vulgare
Hordeum vulgare · TaxonJackyM59 · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

t0

“barley”

✓ located verbatim in the source · title, characters 94–100 · show in text ↑
e1

“ABA priming accelerates stress-response pathways, promoting alternative splicing, isoform switching, and chromatin modifications that enable transcriptome plasticity”

✓ located verbatim in the source · abstract, characters 2090–2255 · show in text ↑

(+)-abscisic acid · physiology: pigments · Hordeum vulgare (barley)Results differ

4 papers: 2 positive, 2 negative or no effect

1 paper in the same direction as this paper · 2 in the opposite direction

  1. negative
  2. negative
  3. positive
See all 4 papers →

(+)-abscisic acid · molecular: expression · Hordeum vulgare (barley)Results differ

15 papers: 6 positive, 9 negative or no effect

5 papers in the same direction as this paper · 9 in the opposite direction

  1. negative
  2. no effect
  3. negative

11 papers more in this group

See all 15 papers →

(+)-abscisic acid · physiology: gas exchange · Hordeum vulgare (barley)Positive and negative results

2 papers: 1 positive, 1 negative or no effect

1 in the opposite direction

  1. negative
See all 2 papers →

(+)-abscisic acid · yield · Hordeum vulgare (barley)Positive and negative results

7 papers: 6 positive, 1 negative or no effect

5 papers in the same direction as this paper · 1 in the opposite direction

  1. positive
  2. negative
  3. positive

3 papers more in this group

See all 7 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.