Paper · 2025 · Frontiers in Plant Science

Transcriptomic and metabolomic analyses reveal the molecular mechanisms by which long-day photoperiods promote flowering in Gossypium hirsutum L.

Ning Zhang; Yujie Liu; Yuli Lu; et al.

10
claims
22
verbatim quotes
1
citations
3
research areas
✓
Open access · cc-by

Abstract

Photoperiod is a crucial environmental cue that regulates flowering time in plants, playing a vital role in crop adaptability and early maturity. However, the molecular mechanisms underlying photoperiod-regulated flowering in cotton ( Gossypium hirsutum L.) remain unclear. In this study, cotton plants were exposed to different photoperiod treatments during the seedling stage. Phenotypic evaluation, transcriptomic sequencing, and metabolomic profiling were integrated to systematically investigate the effects of photoperiod on flowering time and the associated molecular and metabolic regulatory pathways. The results showed that long-day treatments significantly accelerated budding and flowering in cotton, advancing by 20 and 17 days, respectively, compared to short-day conditions. Transcriptome analysis identified numerous differentially expressed genes (DEGs) involved in photoperiod response, hormone signaling, and metabolic regulation. Weighted Gene Co-expression Network Analysis (WGCNA) further revealed that key photoperiod-related genes, including GhFKF1 , were upregulated under long-day conditions and formed co-expression networks with flowering regulators. Integrated transcriptomic and metabolomic analyses revealed significant enrichment in glycerophospholipid metabolism, α-linolenic acid metabolism, and flavonoid biosynthesis pathways. Long-day treatment suppressed the expression of key genes and precursors involved in jasmonic acid biosynthesis, while simultaneously upregulating genes involved in flavonoid biosynthesis, leading to increased accumulation of metabolites such as myricetin. Therefore, we propose a theoretical model in which long-day treatment during the seedling stage integrates hormonal and photoperiodic signals by upregulating the expression of the GhFKF1 gene. This regulation may contribute to the initiation of flowering by simultaneously suppressing jasmonic acid biosynthesis and activating the flavonoid biosynthetic pathway. Our findings offer a theoretical foundation and a novel perspective for understanding the photoperiodic response and molecular mechanisms underlying early maturation in cotton.

Abstract from the paper’s OpenAlex record; open copy licensed cc-by. Read at the source ↗

The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 10

Intervention effectobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

Long-day treatment significantly accelerated budding in cotton by 20 days compared to short-day conditions

Treatment
long-day treatmentse1
Outcome
buddinge1
Direction
acceleratede1
Value
20e1
Comparator
short-day conditionse1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Gossypium hirsutum
Gossypium hirsutum · TaxonChriKo · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e1

“long-day treatments significantly accelerated budding and flowering in cotton, advancing by 20 and 17 days, respectively, compared to short-day conditions”

✓ located verbatim in the source · abstract, characters 634–788 · show in text ↑
Intervention effectobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

Long-day treatment significantly accelerated flowering in cotton by 17 days compared to short-day conditions

Treatment
long-day treatmentse1
Outcome
floweringe1
Direction
acceleratede1
Value
17 dayse1
Comparator
short-day conditionse1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Gossypium hirsutum
Gossypium hirsutum · TaxonChriKo · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e1

“long-day treatments significantly accelerated budding and flowering in cotton, advancing by 20 and 17 days, respectively, compared to short-day conditions”

✓ located verbatim in the source · abstract, characters 634–788 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Transcriptome analysis identified numerous differentially expressed genes in cotton related to photoperiod response, hormone signaling and metabolic regulation

Outcome
differentially expressed genese2

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Gossypium hirsutum
Gossypium hirsutum · TaxonChriKo · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e1

“long-day treatments significantly accelerated budding and flowering in cotton, advancing by 20 and 17 days, respectively, compared to short-day conditions”

✓ located verbatim in the source · abstract, characters 634–788 · show in text ↑
e2

“Transcriptome analysis identified numerous differentially expressed genes (DEGs) involved in photoperiod response, hormone signaling, and metabolic regulation”

✓ located verbatim in the source · abstract, characters 790–948 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Key photoperiod-related genes including GhFKF1 were upregulated under long-day conditions

Treatment
long-day conditionse3
Gene
GhFKF1e3
Outcome
photoperiod-related genese3
Direction
upregulatede3

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Gossypium hirsutum
Gossypium hirsutum · TaxonChriKo · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e1

“long-day treatments significantly accelerated budding and flowering in cotton, advancing by 20 and 17 days, respectively, compared to short-day conditions”

✓ located verbatim in the source · abstract, characters 634–788 · show in text ↑
e3

“key photoperiod-related genes, including GhFKF1 , were upregulated under long-day conditions”

✓ located verbatim in the source · abstract, characters 1025–1117 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

GhFKF1 formed co-expression networks with flowering regulators in cotton

Gene
GhFKF1e3
Outcome
co-expression networks with flowering regulatorse4

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Gossypium hirsutum
Gossypium hirsutum · TaxonChriKo · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e1

“long-day treatments significantly accelerated budding and flowering in cotton, advancing by 20 and 17 days, respectively, compared to short-day conditions”

✓ located verbatim in the source · abstract, characters 634–788 · show in text ↑
e3

“key photoperiod-related genes, including GhFKF1 , were upregulated under long-day conditions”

✓ located verbatim in the source · abstract, characters 1025–1117 · show in text ↑
e4

“formed co-expression networks with flowering regulators”

✓ located verbatim in the source · abstract, characters 1122–1177 · show in text ↑
Observationobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

Integrated transcriptomic and metabolomic analyses revealed significant enrichment in glycerophospholipid, α-linolenic acid and flavonoid biosynthesis pathways in cotton

Outcome
enrichment in glycerophospholipid metabolism, α-linolenic acid metabolism, and flavonoid biosynthesis pathwayse5

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Gossypium hirsutum
Gossypium hirsutum · TaxonChriKo · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e1

“long-day treatments significantly accelerated budding and flowering in cotton, advancing by 20 and 17 days, respectively, compared to short-day conditions”

✓ located verbatim in the source · abstract, characters 634–788 · show in text ↑
e5

“significant enrichment in glycerophospholipid metabolism, α-linolenic acid metabolism, and flavonoid biosynthesis pathways”

✓ located verbatim in the source · abstract, characters 1239–1361 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Long-day treatment suppressed expression of key genes and precursors of jasmonic acid biosynthesis

Treatment
Long-day treatmente6
Outcome
expression of key genes and precursors involved in jasmonic acid biosynthesise6
Direction
suppressede6

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Gossypium hirsutum
Gossypium hirsutum · TaxonChriKo · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e1

“long-day treatments significantly accelerated budding and flowering in cotton, advancing by 20 and 17 days, respectively, compared to short-day conditions”

✓ located verbatim in the source · abstract, characters 634–788 · show in text ↑
e6

“Long-day treatment suppressed the expression of key genes and precursors involved in jasmonic acid biosynthesis”

✓ located verbatim in the source · abstract, characters 1363–1474 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Long-day treatment upregulated genes involved in flavonoid biosynthesis in cotton

Treatment
Long-day treatmente6
Outcome
genes involved in flavonoid biosynthesise7
Direction
upregulatinge7

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Gossypium hirsutum
Gossypium hirsutum · TaxonChriKo · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e1

“long-day treatments significantly accelerated budding and flowering in cotton, advancing by 20 and 17 days, respectively, compared to short-day conditions”

✓ located verbatim in the source · abstract, characters 634–788 · show in text ↑
e6

“Long-day treatment suppressed the expression of key genes and precursors involved in jasmonic acid biosynthesis”

✓ located verbatim in the source · abstract, characters 1363–1474 · show in text ↑
e7

“while simultaneously upregulating genes involved in flavonoid biosynthesis, leading to increased accumulation of metabolites such as myricetin”

✓ located verbatim in the source · abstract, characters 1476–1618 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Long-day treatment increased accumulation of metabolites such as myricetin in cotton

Treatment
Long-day treatmente6
Outcome
accumulation of metabolites such as myricetine7
Direction
increasede7

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Gossypium hirsutum
Gossypium hirsutum · TaxonChriKo · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e1

“long-day treatments significantly accelerated budding and flowering in cotton, advancing by 20 and 17 days, respectively, compared to short-day conditions”

✓ located verbatim in the source · abstract, characters 634–788 · show in text ↑
e6

“Long-day treatment suppressed the expression of key genes and precursors involved in jasmonic acid biosynthesis”

✓ located verbatim in the source · abstract, characters 1363–1474 · show in text ↑
e7

“while simultaneously upregulating genes involved in flavonoid biosynthesis, leading to increased accumulation of metabolites such as myricetin”

✓ located verbatim in the source · abstract, characters 1476–1618 · show in text ↑
Mechanismhypothesisoriginal resultbasis n/a

Claim · model-written summary

Long-day treatment during the seedling stage may initiate flowering in cotton by integrating hormonal and photoperiodic signals through GhFKF1

Organ / stage
seedling stagee2
Treatment
long-day treatmente2
Gene
GhFKF1e2
Outcome
initiation of floweringe3
Qualifier
may contributee3

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Gossypium hirsutum
Gossypium hirsutum · TaxonChriKo · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e1

“long-day treatments significantly accelerated budding and flowering in cotton, advancing by 20 and 17 days, respectively, compared to short-day conditions”

✓ located verbatim in the source · abstract, characters 634–788 · show in text ↑
e2

“we propose a theoretical model in which long-day treatment during the seedling stage integrates hormonal and photoperiodic signals by upregulating the expression of the GhFKF1 gene”

✓ located verbatim in the source · abstract, characters 1631–1811 · show in text ↑
e3

“This regulation may contribute to the initiation of flowering by simultaneously suppressing jasmonic acid biosynthesis and activating the flavonoid biosynthetic pathway”

✓ located verbatim in the source · abstract, characters 1813–1981 · show in text ↑

light · phenology · Gossypium hirsutum (cotton)Positive and negative results

2 papers: 1 positive, 1 negative or no effect

1 in the opposite direction

  1. negative
See all 2 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.