Paper · 2026 · BMC Plant Biology

Transcriptome analysis revealed the mechanism of exogenous silicon alleviating allelopathic inhibition of cinnamic acid on soybean seedlings

Xiaohuan Yang; Zhichao Sun; Yaping Song; et al.

10
claims
15
verbatim quotes
0
citations
3
research areas
✓
Open access · cc-by-nc-nd

Abstract

Soybean (Glycine max (Linn.) Merr.) is one of the important grain crops in China and a significant oilseed and high-protein dual-purpose crop both in China and worldwide. During soybean cultivation, continuous cropping obstacles are often encountered, which impede the growth and development of the crop and significantly reduce its yield and quality. Enhancing soybean’s resistance to autotoxicity has become an important research direction. Exogenous silicon (Si) plays a crucial role in the stress resistance regulation of crops, but the mechanism by which it alleviates autotoxicity remains unclear. We used soybean seeds (“ Zhonghuang 13 “) to assess how exogenous silicon (20 mM) affected the growth, photosynthetic characteristics, and activities of antioxidant enzymes and flavonoid-related enzymes of soybean seedlings under 4 mM Cinnamic acid(CA)-induced autotoxicity. The results showed that 4 mM CA induced autotoxicity could significantly reduce stem weight, stem fresh weight, root dry weight, root fresh weight, plant height and nodule number of soybean seedlings. Exogenous silicon can significantly improve these indexes of soybean seedlings under CA stress, and can also improve the net photosynthetic rate, transpiration rate, stomatal conductance and intercellular CO2 concentration of soybean seedlings under CA stress, and alleviate the inhibition of antioxidase activity induced by CA. In addition, exogenous silicon can reduce the flavonoid-related enzyme activity of soybean seedlings under CA stress, thus reducing the formation of lignin and alleviating the influence on root nodules. Through transcriptome analysis, it was found that under cinnamic acid stress, a total of 9235 differentially expressed genes (DEGs) were responsive to exogenous silicon and involved in a variety of metabolic pathways and biosynthesis, including phenylpropanoid metabolism, hydrogen peroxide metabolism, nitrogen metabolism, nodulation process, plant hormone signal transduction, isoflavone biosynthesis, etc. These major metabolic and biosynthetic pathways may be the potential mechanisms by which exogenous silicon alleviates cinnamic acid stress on soybean seedlings. In addition, some members of the transcription factor family, such as AP2/ERF, C2H2, MYB, NAC, bHLH, and WRKY, may also contribute to exogenous silicon reducing cinnamic acid stress tolerance in soybean plants. This study has far-reaching significance to overcome the obstacle. In conclusion, the phenotypic, physiological and transcriptomic results demonstrated that the autotoxic substance cinnamic acid significantly inhibited the growth of soybeans. Exogenous sodium silicate could enhance the plant’s resistance to cinnamic acid stress by regulating the activities of antioxidant enzymes and phenylpropanoid pathway-related enzymes, as well as the expression of genes related to auxin, plant hormone signal transduction and phenylpropanoid synthesis, thereby alleviating the damage.

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Claims 10

Intervention effectobservedoriginal resultnegativesignificant (as stated)measured

Claim · model-written summary

Cinnamic acid autotoxicity significantly reduced stem weight, stem fresh weight and root dry weight of soybean seedlings.

Taxon
soybean seedlingsGlycine maxe1
Treatment
4 mM CA induced autotoxicitye1
Outcome
stem weight, stem fresh weight, root dry weighte1
Direction
reducee1

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e1

“The results showed that 4 mM CA induced autotoxicity could significantly reduce stem weight, stem fresh weight, root dry weight, root fresh weight, plant height and nodule number of soybean seedlings”

✓ located verbatim in the source · abstract, characters 879–1078 · show in text ↑
Intervention effectobservedoriginal resultnegativesignificant (as stated)measured

Claim · model-written summary

Cinnamic acid autotoxicity significantly reduced root fresh weight, plant height and nodule number of soybean seedlings.

Taxon
soybean seedlingsGlycine maxe1
Treatment
4 mM CA induced autotoxicitye1
Outcome
root fresh weight, plant height and nodule numbere1
Direction
reducee1

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e1

“The results showed that 4 mM CA induced autotoxicity could significantly reduce stem weight, stem fresh weight, root dry weight, root fresh weight, plant height and nodule number of soybean seedlings”

✓ located verbatim in the source · abstract, characters 879–1078 · show in text ↑
Intervention effectobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

Exogenous silicon significantly improved the growth indexes of soybean seedlings under cinnamic acid stress.

Taxon
soybean seedlingsGlycine maxe3
Treatment
Exogenous silicone3
Outcome
these indexese3
Direction
improvee3

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e3

“Exogenous silicon can significantly improve these indexes of soybean seedlings under CA stress”

✓ located verbatim in the source · abstract, characters 1080–1174 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Exogenous silicon improved net photosynthetic rate, transpiration rate and stomatal conductance of soybean seedlings under cinnamic acid stress.

Taxon
soybean seedlingsGlycine maxe4
Treatment
Exogenous silicone3
Outcome
net photosynthetic rate, transpiration rate, stomatal conductancee4
Direction
improvee4

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e3

“Exogenous silicon can significantly improve these indexes of soybean seedlings under CA stress”

✓ located verbatim in the source · abstract, characters 1080–1174 · show in text ↑
e4

“can also improve the net photosynthetic rate, transpiration rate, stomatal conductance and intercellular CO2 concentration of soybean seedlings under CA stress”

✓ located verbatim in the source · abstract, characters 1180–1339 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Exogenous silicon improved intercellular CO2 concentration of soybean seedlings under cinnamic acid stress.

Taxon
soybean seedlingsGlycine maxe4
Treatment
Exogenous silicone3
Outcome
intercellular CO2 concentratione4
Direction
improvee4

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e3

“Exogenous silicon can significantly improve these indexes of soybean seedlings under CA stress”

✓ located verbatim in the source · abstract, characters 1080–1174 · show in text ↑
e4

“can also improve the net photosynthetic rate, transpiration rate, stomatal conductance and intercellular CO2 concentration of soybean seedlings under CA stress”

✓ located verbatim in the source · abstract, characters 1180–1339 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Exogenous silicon alleviated the inhibition of antioxidase activity induced by cinnamic acid.

Taxon
soybean seedlingsGlycine maxe3
Treatment
Exogenous silicone3
Outcome
antioxidase activitye5
Direction
alleviatee5

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e3

“Exogenous silicon can significantly improve these indexes of soybean seedlings under CA stress”

✓ located verbatim in the source · abstract, characters 1080–1174 · show in text ↑
e5

“alleviate the inhibition of antioxidase activity induced by CA”

✓ located verbatim in the source · abstract, characters 1345–1407 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Exogenous silicon reduced flavonoid-related enzyme activity under cinnamic acid stress, thereby reducing lignin formation.

Taxon
soybean seedlingsGlycine maxe6
Treatment
exogenous silicone6
Compound
lignine6
Outcome
flavonoid-related enzyme activitye6
Direction
reducee6

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e6

“exogenous silicon can reduce the flavonoid-related enzyme activity of soybean seedlings under CA stress, thus reducing the formation of lignin and alleviating the influence on root nodules”

✓ located verbatim in the source · abstract, characters 1422–1610 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Transcriptome analysis found 9235 differentially expressed genes responsive to exogenous silicon under cinnamic acid stress.

Taxon
soybean seedlingsGlycine maxe1
Outcome
differentially expressed genese7
Value
9235e7

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e1

“The results showed that 4 mM CA induced autotoxicity could significantly reduce stem weight, stem fresh weight, root dry weight, root fresh weight, plant height and nodule number of soybean seedlings”

✓ located verbatim in the source · abstract, characters 879–1078 · show in text ↑
e7

“a total of 9235 differentially expressed genes (DEGs) were responsive to exogenous silicon and involved in a variety of metabolic pathways and biosynthesis, including phenylpropanoid metabolism, hydrogen peroxide metabolism, nitrogen metabolism, nodulation process, plant hormone signal transduction, isoflavone biosynthesis”

✓ located verbatim in the source · abstract, characters 1690–2014 · show in text ↑
Mechanismhypothesisoriginal resultpositivemeasured

Claim · model-written summary

Phenylpropanoid, hydrogen peroxide, nitrogen, nodulation, hormone signal and isoflavone pathways may be the mechanisms by which silicon alleviates cinnamic acid stress.

Taxon
soybean seedlingsGlycine maxe6
Outcome
cinnamic acid stresse6
Qualifier
phenylpropanoid metabolism, hydrogen peroxide metabolism, nitrogen metabolism, nodulation process, plant hormone signal transduction, isoflavone biosynthesise7

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e6

“These major metabolic and biosynthetic pathways may be the potential mechanisms by which exogenous silicon alleviates cinnamic acid stress on soybean seedlings”

✓ located verbatim in the source · abstract, characters 2021–2180 · show in text ↑
e7

“including phenylpropanoid metabolism, hydrogen peroxide metabolism, nitrogen metabolism, nodulation process, plant hormone signal transduction, isoflavone biosynthesis”

✓ located verbatim in the source · abstract, characters 1847–2014 · show in text ↑
Mechanismhypothesisoriginal resultpositivemeasured

Claim · model-written summary

AP2/ERF, C2H2, MYB, NAC, bHLH and WRKY transcription factors may contribute to silicon reducing cinnamic acid stress tolerance.

Taxon
soybean plantsGlycine maxe6
Gene
AP2/ERF, C2H2, MYB, NAC, bHLH, and WRKYe6
Outcome
cinnamic acid stress tolerancee6

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e6

“some members of the transcription factor family, such as AP2/ERF, C2H2, MYB, NAC, bHLH, and WRKY, may also contribute to exogenous silicon reducing cinnamic acid stress tolerance in soybean plants”

✓ located verbatim in the source · abstract, characters 2195–2391 · show in text ↑

silicon atom · physiology: gas exchange · Glycine max (soybean)Results differ

5 papers: 4 positive, 1 negative or no effect

3 papers in the same direction as this paper · 1 in the opposite direction

  1. negative
  2. positive
  3. positive

1 paper more in this group

See all 5 papers →

silicon atom · physiology: enzyme activity · Glycine max (soybean)Positive and negative results

2 papers: 1 positive, 1 negative or no effect

1 in the opposite direction

  1. no effect
See all 2 papers →

silicon atom · soil: biology · Glycine max (soybean)Results agree

2 papers: 2 positive, 0 negative or no effect

1 paper in the same direction as this paper

  1. positive
See all 2 papers →

cinnamic acid · growth · Glycine max (soybean)Results agree

2 papers: 0 positive, 2 negative or no effect

1 paper in the same direction as this paper

  1. negative
See all 2 papers →

silicon atom · physiology: photosynthesis · Glycine max (soybean)Results agree

7 papers: 7 positive, 0 negative or no effect

6 papers in the same direction as this paper

  1. positive
  2. positive
  3. positive

3 papers more in this group

See all 7 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.