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“Arabidopsis flowering”

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Organism names are matched through NCBI Taxonomy: “arabidopsis” → Arabidopsis. Claims whose organism was placed there count as matches whatever the abstract calls it (maize, corn, Zea mays).

Observationobservedoriginal resultmeasured

Claim · model-written summary

All three TaNAK1 isoforms had conserved NB-ARC and protein kinase domains, differing in domain positions and kinase domain lengths.

Taxon: wheatTriticum aestivumt0
Gene: TaNAK1t0
Outcome: positions of these two domains and the length of the protein kinase domainse0
Direction: differente0

Verbatim

e0
“all three protein isoforms have a conserved NB-ARC domain and a protein kinase domain, but the positions of these two domains and the length of the protein kinase domains are different among them”
✓ located verbatim in the source · abstract, characters 637–832

t0
“wheat gene TaNAK1”
✓ located verbatim in the source · title, characters 39–56

Title

Two alternative splicing variants of a wheat gene TaNAK1, TaNAK1.1 and TaNAK1.2, differentially regulate flowering time and plant architecture leading to differences in seed yield of transgenic Arabidopsis

Baowei Wu; Xiaoyu Zhang; Kunzhi Hu; et al. Frontiers in Plant Science 2022. doi:10.3389/fpls.2022.1014176

Other claims from this paper (12)

Observation TaNAK1 produced three splice variants.
Observation TaNAK1.1 and TaNAK1.2 had different expression patterns during wheat development.
Observation TaNAK1.3 was not detected.
Observation TaNAK1.1 was mainly localized in the cytoplasm.
Observation TaNAK1.2 was localized in the nucleus and cytoplasm.
Observation Both TaNAK1.1 and TaNAK1.2 showed protein kinase activity in vitro.
Intervention effect TaNAK1.2 promoted the vegetative-to-reproductive transition in Arabidopsis.
Intervention effect TaNAK1.2 positively regulated Arabidopsis plant height, branching number and seed size.
Intervention effect TaNAK1.2 positively regulated Arabidopsis seed yield.
Intervention effect TaNAK1.1 negatively regulated Arabidopsis transition to reproductive growth.
Intervention effect TaNAK1.1 negatively regulated Arabidopsis plant height, branching number and seed size.
Intervention effect TaNAK1.1 negatively regulated Arabidopsis seed yield.

Intervention effectobservedoriginal resultno effectmeasured

Claim · model-written summary

Node number of transgenic Kalanchoë blossfeldiana was similar to that of control plants.

Taxon: Kalanchoë blossfeldianae0
Treatment: MKS1 gene was overexpressede1
Outcome: number of nodese5
Direction: similare5
Comparator: control plantse5

Verbatim

e0
“This study evaluates the effect of manipulating MAP kinase 4 nuclear substrate 1 (MKS1) expression in Kalanchoë blossfeldiana and Petunia hybrida”
✓ located verbatim in the source · abstract, characters 206–351

e1
“The Arabidopsis thaliana MKS1 gene was overexpressed in both species via Agrobacterium-mediated transformation, resulting in dwarfed phenotypes and delayed flowering in both species”
✓ located verbatim in the source · abstract, characters 353–534

e5
“the number of nodes in the transgenic plants was similar to that of the control plants”
✓ located verbatim in the source · abstract, characters 686–772

Title

Manipulation of MKS1 gene expression affects Kalanchoë blossfeldiana and Petunia hybrida phenotypes

Joanna Maria Gargul; Heiko Mibus; Margrethe Serek Plant Biotechnology Journal 2014. doi:10.1111/pbi.12234

Other claims from this paper (11)

Intervention effect Overexpressed Arabidopsis MKS1 gave Kalanchoë blossfeldiana dwarfed phenotypes and delayed flowering.
Intervention effect Transgenic Kalanchoë blossfeldiana flowers had an increased anthocyanin concentration.
Intervention effect Overexpressed MKS1 decreased the length of the inflorescence stem of Kalanchoë blossfeldiana.
Intervention effect Overexpressed MKS1 decreased the lengths of stems and internodes of Kalanchoë blossfeldiana.
Intervention effect Overexpressed MKS1 gave Petunia hybrida dwarfed phenotypes and delayed flowering.
Intervention effect Petunia hybrida plants with four copies of the transgene had higher tolerance to Pseudomonas syringae pv. tomato.
Intervention effect Petunia hybrida plants with one copy of the transgene reacted to Pseudomonas syringae similarly to nontransgenic control plants.
Intervention effect Overexpressed MKS1 decreased the lengths of stems and internodes of Petunia hybrida.
Intervention effect Node number of transgenic Petunia hybrida was similar to that of control plants.
Intervention effect The morphology of transgenic Petunia hybrida flowers was not altered by MKS1 overexpression.
Intervention effect Silencing MKS1 by VIGS in Petunia hybrida gave no significant phenotypic differences from controls.

Intervention effectobservedoriginal resultno effectmeasured

Claim · model-written summary

Node number of transgenic Petunia hybrida was similar to that of control plants.

Taxon: Petunia hybridaPetunia ×hybridae0
Treatment: MKS1 gene was overexpressede1
Outcome: number of nodese5
Direction: similare5
Comparator: control plantse5

Verbatim

e0
“This study evaluates the effect of manipulating MAP kinase 4 nuclear substrate 1 (MKS1) expression in Kalanchoë blossfeldiana and Petunia hybrida”
✓ located verbatim in the source · abstract, characters 206–351

e1
“The Arabidopsis thaliana MKS1 gene was overexpressed in both species via Agrobacterium-mediated transformation, resulting in dwarfed phenotypes and delayed flowering in both species”
✓ located verbatim in the source · abstract, characters 353–534

e5
“the number of nodes in the transgenic plants was similar to that of the control plants”
✓ located verbatim in the source · abstract, characters 686–772

Title

Manipulation of MKS1 gene expression affects Kalanchoë blossfeldiana and Petunia hybrida phenotypes

Joanna Maria Gargul; Heiko Mibus; Margrethe Serek Plant Biotechnology Journal 2014. doi:10.1111/pbi.12234

Other claims from this paper (11)

Intervention effect Overexpressed Arabidopsis MKS1 gave Kalanchoë blossfeldiana dwarfed phenotypes and delayed flowering.
Intervention effect Transgenic Kalanchoë blossfeldiana flowers had an increased anthocyanin concentration.
Intervention effect Overexpressed MKS1 decreased the length of the inflorescence stem of Kalanchoë blossfeldiana.
Intervention effect Overexpressed MKS1 decreased the lengths of stems and internodes of Kalanchoë blossfeldiana.
Intervention effect Node number of transgenic Kalanchoë blossfeldiana was similar to that of control plants.
Intervention effect Overexpressed MKS1 gave Petunia hybrida dwarfed phenotypes and delayed flowering.
Intervention effect Petunia hybrida plants with four copies of the transgene had higher tolerance to Pseudomonas syringae pv. tomato.
Intervention effect Petunia hybrida plants with one copy of the transgene reacted to Pseudomonas syringae similarly to nontransgenic control plants.
Intervention effect Overexpressed MKS1 decreased the lengths of stems and internodes of Petunia hybrida.
Intervention effect The morphology of transgenic Petunia hybrida flowers was not altered by MKS1 overexpression.
Intervention effect Silencing MKS1 by VIGS in Petunia hybrida gave no significant phenotypic differences from controls.

Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Zm AGO1a overexpression restored the lower seed set and darker green leaves of the ago1-27 mutant to the wild-type phenotype.

Taxon: maizeZea mayse4
Material: ago1-27 mutante1
Treatment: constitutive overexpression of Zm AGO1 ae1
Gene: Zm AGO1 ae1
Outcome: seed set, and darker green leavese1
Direction: restoree1
Comparator: wild-type phenotypee1

Verbatim

e4
“characterized in maize(Zea mays L.)”
✓ located verbatim in the source · abstract, characters 225–260

e1
“Complementation of the Arabidopsis ago1-27 mutant with Zm AGO1 a indicated that constitutive overexpression of Zm AGO1 a could restore the smaller rosette, serrated leaves, later flowering and maturation, lower seed set, and darker green leaves at late stages of the mutant to the wild-type phenotype”
✓ located verbatim in the source · abstract, characters 372–672

Title

Identification and functional characterization of the AGO1 ortholog in maize

Dongdong; Xu; Hailong Hailong; et al. 植物学报：英文版 2016

Other claims from this paper (4)

Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Saran sealing prevented seed pod formation of mouse ear cress up to day 124.

Taxon: mouse ear cressArabidopsis thalianae1
Treatment: tubes sealed with Sarane1
Outcome: seed pod formatione2
Qualifier: still lacking in the sealed plants even up to day 124e2
Comparator: open-to-air controlse2

Not reportedDirection

Verbatim

e1
“the growth (height) and flowering (date of bud appearance) were suppressed in mouse ear cress in tubes sealed with Saran”
✓ located verbatim in the source · abstract, characters 300–420

e2
“Seed pod formation which occurred by day 45 in open-to-air controls, was still lacking in the sealed plants even up to day 124”
✓ located verbatim in the source · abstract, characters 422–548

Title

Effect of cultural conditions on the seed-to-seed growth of Arabidopsis and Cardamine - A study of growth rates and reproductive development as affected by test tube seals

T. Hoshizaki NASA Technical Reports Server (NASA) 1982

Other claims from this paper (5)

Intervention effect Saran sealing suppressed growth in height and flowering date of mouse ear cress.
Intervention effect Saran seal suppressed growth and flowering of bitter cress.
Intervention effect Up to day 55, Saran-sealed bitter cress plants were taller than unsealed plants, in contrast to later suppression.
Mechanism Atmospheric composition in the sealed tubes is suggested to cause the suppression of growth, flowering and seed pod development.
Intervention effect Mouse ear cress renewed growth and then set seed pods after the Saran seal was ruptured.

Associationobservedoriginal resultnegativemeasured

Claim · model-written summary

Sly-STTM169 tomato plants have reduced biomass.

Taxon: tomatoSolanum lycopersicume1
Material: Sly-STTM169 plantse2
Treatment: increased levels of Sly-NF-YA10e2
Outcome: biomasse2
Direction: reducede2

Verbatim

e1
“Sly-MIR169-OE lines in tomato, having reduced target Sly-NF-YA10 levels, also regulate Sly-ARGOS resulting in early flowering, larger sized fruits, more fruit fresh weight, higher fruit set, early fruiting, and better shelf life than wild-type plants”
✓ located verbatim in the source · abstract, characters 1264–1514

e2
“In contrast, Sly-STTM169 plants inhibited for Sly-miR169 action and having increased levels of Sly-NF-YA10 have a longer life cycle with reduced biomass, decreased fruit set, and an overall reduction in yield”
✓ located verbatim in the source · abstract, characters 1516–1724

Title

The MIR169:NF‐YA module enhances biomass and yield via ARGOS in Arabidopsis and tomato

Apoorva Gupta; Sombir Rao; Sarita Jha; et al. The Plant Journal 2025. doi:10.1111/tpj.70538

Other claims from this paper (16)

Association Elevated miR169d expression with reduced NF-YA2 target levels positively regulates vegetative growth and yield in Arabidopsis.
Association Lines with increased NF-YA2 levels show the opposite phenotype to miR169d-overexpressing lines.
Association Auxin levels are increased in MIR169d-OE and nf-ya2 mutant lines.
Association ARGOS is upregulated in MIR169d-OE lines due to reduced NF-YA2 repressor levels.
Observation NF-YA2 directly binds the ARGOS promoter.
Association Overexpressing miR169d in an argos mutant background does not rescue the argos mutant phenotype, and nf-ya2:argos double mutants do not either.
Mechanism The data suggest a parallel, auxin-independent pathway of ARGOS regulation via the MIR169:NF-YA2 node.
Intervention effect Sly-MIR169-OE tomato lines flower early.
Intervention effect Sly-MIR169-OE tomato lines fruit early.
Intervention effect Sly-MIR169-OE tomato lines have more fruit fresh weight than wild-type plants.
Intervention effect Sly-MIR169-OE tomato lines produce larger sized fruits than wild-type plants.
Intervention effect Sly-MIR169-OE tomato lines have higher fruit set than wild-type plants.
Intervention effect Sly-MIR169-OE tomato lines have better shelf life than wild-type plants.
Association Sly-STTM169 tomato plants with increased Sly-NF-YA10 have a longer life cycle.
Association Sly-STTM169 tomato plants have decreased fruit set.
Association Sly-STTM169 tomato plants show an overall reduction in yield.

Associationobservedoriginal resultnegativemeasured

Claim · model-written summary

Sly-STTM169 tomato plants have decreased fruit set.

Taxon: tomatoSolanum lycopersicume1
Material: Sly-STTM169 plantse2
Treatment: increased levels of Sly-NF-YA10e2
Outcome: fruit sete2
Direction: decreasede2

Verbatim

e1
“Sly-MIR169-OE lines in tomato, having reduced target Sly-NF-YA10 levels, also regulate Sly-ARGOS resulting in early flowering, larger sized fruits, more fruit fresh weight, higher fruit set, early fruiting, and better shelf life than wild-type plants”
✓ located verbatim in the source · abstract, characters 1264–1514

e2
“In contrast, Sly-STTM169 plants inhibited for Sly-miR169 action and having increased levels of Sly-NF-YA10 have a longer life cycle with reduced biomass, decreased fruit set, and an overall reduction in yield”
✓ located verbatim in the source · abstract, characters 1516–1724

Title

The MIR169:NF‐YA module enhances biomass and yield via ARGOS in Arabidopsis and tomato

Apoorva Gupta; Sombir Rao; Sarita Jha; et al. The Plant Journal 2025. doi:10.1111/tpj.70538

Other claims from this paper (16)

Association Elevated miR169d expression with reduced NF-YA2 target levels positively regulates vegetative growth and yield in Arabidopsis.
Association Lines with increased NF-YA2 levels show the opposite phenotype to miR169d-overexpressing lines.
Association Auxin levels are increased in MIR169d-OE and nf-ya2 mutant lines.
Association ARGOS is upregulated in MIR169d-OE lines due to reduced NF-YA2 repressor levels.
Observation NF-YA2 directly binds the ARGOS promoter.
Association Overexpressing miR169d in an argos mutant background does not rescue the argos mutant phenotype, and nf-ya2:argos double mutants do not either.
Mechanism The data suggest a parallel, auxin-independent pathway of ARGOS regulation via the MIR169:NF-YA2 node.
Intervention effect Sly-MIR169-OE tomato lines flower early.
Intervention effect Sly-MIR169-OE tomato lines fruit early.
Intervention effect Sly-MIR169-OE tomato lines have more fruit fresh weight than wild-type plants.
Intervention effect Sly-MIR169-OE tomato lines produce larger sized fruits than wild-type plants.
Intervention effect Sly-MIR169-OE tomato lines have higher fruit set than wild-type plants.
Intervention effect Sly-MIR169-OE tomato lines have better shelf life than wild-type plants.
Association Sly-STTM169 tomato plants with increased Sly-NF-YA10 have a longer life cycle.
Association Sly-STTM169 tomato plants have reduced biomass.
Association Sly-STTM169 tomato plants show an overall reduction in yield.

Associationobservedoriginal resultnegativemeasured

Claim · model-written summary

Sly-STTM169 tomato plants show an overall reduction in yield.

Taxon: tomatoSolanum lycopersicume1
Material: Sly-STTM169 plantse2
Treatment: increased levels of Sly-NF-YA10e2
Outcome: yielde2
Direction: reductione2

Verbatim

e1
“Sly-MIR169-OE lines in tomato, having reduced target Sly-NF-YA10 levels, also regulate Sly-ARGOS resulting in early flowering, larger sized fruits, more fruit fresh weight, higher fruit set, early fruiting, and better shelf life than wild-type plants”
✓ located verbatim in the source · abstract, characters 1264–1514

e2
“In contrast, Sly-STTM169 plants inhibited for Sly-miR169 action and having increased levels of Sly-NF-YA10 have a longer life cycle with reduced biomass, decreased fruit set, and an overall reduction in yield”
✓ located verbatim in the source · abstract, characters 1516–1724

Title

The MIR169:NF‐YA module enhances biomass and yield via ARGOS in Arabidopsis and tomato

Apoorva Gupta; Sombir Rao; Sarita Jha; et al. The Plant Journal 2025. doi:10.1111/tpj.70538

Other claims from this paper (16)

Association Elevated miR169d expression with reduced NF-YA2 target levels positively regulates vegetative growth and yield in Arabidopsis.
Association Lines with increased NF-YA2 levels show the opposite phenotype to miR169d-overexpressing lines.
Association Auxin levels are increased in MIR169d-OE and nf-ya2 mutant lines.
Association ARGOS is upregulated in MIR169d-OE lines due to reduced NF-YA2 repressor levels.
Observation NF-YA2 directly binds the ARGOS promoter.
Association Overexpressing miR169d in an argos mutant background does not rescue the argos mutant phenotype, and nf-ya2:argos double mutants do not either.
Mechanism The data suggest a parallel, auxin-independent pathway of ARGOS regulation via the MIR169:NF-YA2 node.
Intervention effect Sly-MIR169-OE tomato lines flower early.
Intervention effect Sly-MIR169-OE tomato lines fruit early.
Intervention effect Sly-MIR169-OE tomato lines have more fruit fresh weight than wild-type plants.
Intervention effect Sly-MIR169-OE tomato lines produce larger sized fruits than wild-type plants.
Intervention effect Sly-MIR169-OE tomato lines have higher fruit set than wild-type plants.
Intervention effect Sly-MIR169-OE tomato lines have better shelf life than wild-type plants.
Association Sly-STTM169 tomato plants with increased Sly-NF-YA10 have a longer life cycle.
Association Sly-STTM169 tomato plants have reduced biomass.
Association Sly-STTM169 tomato plants have decreased fruit set.

Associationobservedoriginal resultnegativemeasured

Claim · model-written summary

Sly-STTM169 tomato plants with increased Sly-NF-YA10 have a longer life cycle.

Taxon: tomatoSolanum lycopersicume1
Material: Sly-STTM169 plantse2
Treatment: increased levels of Sly-NF-YA10e2
Outcome: life cyclee2
Direction: longere2

Verbatim

e1
“Sly-MIR169-OE lines in tomato, having reduced target Sly-NF-YA10 levels, also regulate Sly-ARGOS resulting in early flowering, larger sized fruits, more fruit fresh weight, higher fruit set, early fruiting, and better shelf life than wild-type plants”
✓ located verbatim in the source · abstract, characters 1264–1514

e2
“In contrast, Sly-STTM169 plants inhibited for Sly-miR169 action and having increased levels of Sly-NF-YA10 have a longer life cycle with reduced biomass, decreased fruit set, and an overall reduction in yield”
✓ located verbatim in the source · abstract, characters 1516–1724

Title

The MIR169:NF‐YA module enhances biomass and yield via ARGOS in Arabidopsis and tomato

Apoorva Gupta; Sombir Rao; Sarita Jha; et al. The Plant Journal 2025. doi:10.1111/tpj.70538

Other claims from this paper (16)

Association Elevated miR169d expression with reduced NF-YA2 target levels positively regulates vegetative growth and yield in Arabidopsis.
Association Lines with increased NF-YA2 levels show the opposite phenotype to miR169d-overexpressing lines.
Association Auxin levels are increased in MIR169d-OE and nf-ya2 mutant lines.
Association ARGOS is upregulated in MIR169d-OE lines due to reduced NF-YA2 repressor levels.
Observation NF-YA2 directly binds the ARGOS promoter.
Association Overexpressing miR169d in an argos mutant background does not rescue the argos mutant phenotype, and nf-ya2:argos double mutants do not either.
Mechanism The data suggest a parallel, auxin-independent pathway of ARGOS regulation via the MIR169:NF-YA2 node.
Intervention effect Sly-MIR169-OE tomato lines flower early.
Intervention effect Sly-MIR169-OE tomato lines fruit early.
Intervention effect Sly-MIR169-OE tomato lines have more fruit fresh weight than wild-type plants.
Intervention effect Sly-MIR169-OE tomato lines produce larger sized fruits than wild-type plants.
Intervention effect Sly-MIR169-OE tomato lines have higher fruit set than wild-type plants.
Intervention effect Sly-MIR169-OE tomato lines have better shelf life than wild-type plants.
Association Sly-STTM169 tomato plants have reduced biomass.
Association Sly-STTM169 tomato plants have decreased fruit set.
Association Sly-STTM169 tomato plants show an overall reduction in yield.

Observationobservedoriginal resultmeasured

Claim · model-written summary

The CuGA2ox4 expression pattern in reproductive tissues of adult trees resembles that of CuGA20ox1; both are expressed in juice sacs in November and December and in peel in December.

Taxon: Satsuma Mandarin (Citrus unshiu Marc.)Citrus unshiut0
Organ / stage: reproductive tissues of the adult treese3
Gene: CuGA2ox4e3
Outcome: expression patterne3
Comparator: CuGA20ox1e3

Verbatim

t0
“Satsuma Mandarin (Citrus unshiu Marc.)”
✓ located verbatim in the source · title, characters 33–71

e3
“The expression pattern of CuGA2ox4 resembled that of CuGA20ox1, which was reported previously as a Satsuma mandarin GA 20-oxidase gene, in the reproductive tissues of the adult trees in that both genes were expressed in juice sacs in November and December and peel in December”
✓ located verbatim in the source · abstract, characters 553–829

Title

Gibberellin 2-Oxidase Genes from Satsuma Mandarin (Citrus unshiu Marc.) Caused Late Flowering and Dwarfism in Transgenic Arabidopsis

Nobuhiro Kotoda; Satoshi Matsuo; Ichiro Honda; et al. The Horticulture Journal 2016. doi:10.2503/hortj.okd-016

Other claims from this paper (5)

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“Arabidopsis flowering”

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