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Observationobservedoriginal resultno effectmeasured

Claim · model-written summary

Predicted miRNA targets and host genes of these tobacco circRNAs did not show altered expression.

Outcome
predicted miRNA targets nor their host genese0
Direction
neithere0

Verbatim

e0

“neither their predicted miRNA targets nor their host genes exhibited altered expression levels”

✓ located verbatim in the source · abstract, characters 766–860
t0

“tobacco”

✓ located verbatim in the source · title, characters 63–70

Title

Transcriptome and small RNA sequencings reveal the response of tobacco to aphid infestation

Jiong-Yi Li; Yi-Xuan You; Xiao-Wei Wang; et al. BMC Genomics 2025. doi:10.1186/s12864-025-12361-8

Other claims from this paper (7)
Observationobservedoriginal resultno effectmeasured

Claim · model-written summary

No major shift in functional groups over the time course of the experiment was observed

Taxon
Picea abiesPicea abiest0
Outcome
A major shift in functional groups over the time coursee4
Qualifier
could not be observede4

Verbatim

t0

“Analysis of the Phialocephala subalpina Transcriptome during Colonization of Its Host Plant Picea abies”

✓ located verbatim in the source · title, characters 0–103
e4

“A major shift in functional groups over the time course of this experiment could not be observed”

✓ located verbatim in the source · abstract, characters 1389–1485

Title

Analysis of the Phialocephala subalpina Transcriptome during Colonization of Its Host Plant Picea abies

Vanessa Reininger; Markus Schlegel PLoS ONE 2016. doi:10.1371/journal.pone.0150591

Other claims from this paper (4)
Observationobservedoriginal resultno effectmeasured

Claim · model-written summary

The corresponding SL1344 mutants behaved like their parental strain.

Outcome
such mutants behaved similarly to the parental straine0
Comparator
parental straine0

Not reportedDirection

Verbatim

e0

“in strain SL1344, such mutants behaved similarly to the parental strain”

✓ located verbatim in the source · abstract, characters 1581–1652
t0

“Cilantro”

✓ located verbatim in the source · title, characters 44–52

Title

The Salmonella Transcriptome in Lettuce and Cilantro Soft Rot Reveals a Niche Overlap with the Animal Host Intestine

Danielle M. Goudeau; Craig T. Parker; Yaguang Zhou; et al. Applied and Environmental Microbiology 2012. doi:10.1128/aem.02290-12

Other claims from this paper (10)
Observationobservedoriginal resultno effectmeasured

Claim · model-written summary

Sclerotinia virulence genes showed similar expression in resistant and susceptible Brassica at 24 hpi.

Taxon
B. oleraceaBrassica oleraceae0
Material
R and S B. oleraceae0
Interactor
Sclerotinia sclerotiorumSclerotinia sclerotiorumt0pathogen
Outcome
similar expression patternse0
Direction
similare0
Qualifier
24 hpie0

Verbatim

e0

“but exhibited similar expression patterns in R and S B. oleracea at 24 hpi.”

✓ located verbatim in the source · abstract, characters 533–608
t0

“Sclerotinia sclerotiorum”

✓ located verbatim in the source · title, characters 114–138

Title

Simultaneous Transcriptome Analysis of Host and Pathogen Highlights the Interaction Between Brassica oleracea and Sclerotinia sclerotiorum

Yijuan Ding; Jiaqin Mei; Yaru Chai; et al. Phytopathology 2018. doi:10.1094/phyto-06-18-0204-r

Other claims from this paper (5)
Intervention effectobservedoriginal resultno effectmeasured

Claim · model-written summary

Without Penicillium chrysogenum, the consortium did not disrupt sorghum morphological features.

Taxon
sorghumSorghume0
Treatment
in the absence of Penicillium chrysogenume6
Interactor
Penicillium chrysogenumPenicillium chrysogenume6symbiont
Outcome
disruptione6

Not reportedComparatorDirection

Verbatim

e0

“sorghum plants were grown for 5 weeks in pots of soil with or without inoculation of T. afroharzianum T22”

✓ located verbatim in the source · abstract, characters 137–242
e6

“this disruption was not observed in the absence of Penicillium chrysogenum”

✓ located verbatim in the source · abstract, characters 1291–1365

Title

Local signal from Trichoderma afroharzianum T22 induces host transcriptome and endophytic microbiome leading to growth promotion in sorghum

Ahmad H Kabir; Asha Thapa; Md Rokibul Hasan; et al. Journal of Experimental Botany 2024. doi:10.1093/jxb/erae340

Other claims from this paper (11)
Intervention effectobservedoriginal resultno effectmeasured

Claim · model-written summary

CMV challenge caused practically no change in the transcription profile of cucumber cv. Heliana.

Taxon
cucumberCucumis sativuse0
Material
cv. Helianae4
Treatment
CMV challengee4
Interactor
Cucumber mosaic viruscucumber mosaic cucumoviruse1pathogen
Outcome
transcription profilee4
Direction
no changee4

Not reportedComparator

Verbatim

e0

“two cucumber cultivars with different response to CMV challenge were tested”

✓ located verbatim in the source · abstract, characters 504–579
e1

“Cucumber mosaic virus (CMV), with extremely broad host range”

✓ located verbatim in the source · abstract, characters 0–60
e4

“CMV challenge caused practically no change in the transcription profile of the cv. Heliana”

✓ located verbatim in the source · abstract, characters 1338–1428

Title

Comparative Transcriptome Analysis of Two Cucumber Cultivars with Different Sensitivity to Cucumber Mosaic Virus Infection

Zdeno Šubr; Lukáš Predajňa; Katarína Šoltys; et al. Pathogens 2020. doi:10.3390/pathogens9020145

Other claims from this paper (5)
Intervention effectobservedoriginal resultno effectmeasured

Claim · model-written summary

Metabolic enzyme gene expression in the isochorismate synthase pathway remained unchanged in Cmm-infected tomato.

Treatment
Cmm infectione7
Interactor
Cmme7pathogen
Outcome
metabolic enzyme gene expression in the isochorismate synthase pathwaye1
Direction
remained unchangede1

Not reportedComparator

Verbatim

e0

“Bacterial canker of tomato (Solanum lycopersicon) caused by the Gram-positive bacterium Clavibacter michiganensis subsp. michiganensis (Cmm)”

✓ located verbatim in the source · abstract, characters 0–140
e7

“Cmm infection drastically stimulated SA accumulation in tomato cotyledons”

✓ located verbatim in the source · abstract, characters 1268–1341
e1

“Genes involved in the phenylalanine ammonia lyase pathway were upregulated, whereas metabolic enzyme gene expression in the isochorismate synthase pathway remained unchanged”

✓ located verbatim in the source · abstract, characters 1343–1516

Title

Transcriptome analysis of Clavibacter michiganensis subsp. michiganensis-infected tomatoes: a role of salicylic acid in the host response

Naoki Yokotani; Yoshinori Hasegawa; Masaru Sato; et al. BMC Plant Biology 2021. doi:10.1186/s12870-021-03251-8

Other claims from this paper (13)
Observationobservedoriginal resultno effectmeasured

Claim · model-written summary

Mutant cells treated with luteolin on M. truncatula showed normal nod gene expression.

Taxon
M. truncatulaMedicago truncatulae5
Interactor
S. melilotiSinorhizobium melilotie2symbiont
Outcome
nod gene expressione5
Qualifier
normale5

Verbatim

e5

“Global transcriptome analyses of ∆relA cells treated with the alfalfa flavonoid luteolin and of mature nodules induced by the mutant on M. truncatula revealed normal nod gene expression but overexpression of exopolysaccharide biosynthesis genes and a slight suppression of plant defense-like reactions”

✓ located verbatim in the source · abstract, characters 921–1222
e2

“compare the behavior of the S. meliloti ∆relA mutant and wild type (WT) on the two plant hosts”

✓ located verbatim in the source · abstract, characters 561–655

Title

Symbiotic Performance of Sinorhizobium meliloti Lacking ppGpp Depends on the Medicago Host Species

Kathrin Wippel; Sharon R. Long Molecular Plant-Microbe Interactions 2018. doi:10.1094/mpmi-11-18-0306-r

Other claims from this paper (11)
Observationobservedoriginal resultno effectmeasured

Claim · model-written summary

No PDF1.2 induction is observed in the Westar genotype at any time point.

Taxon
Brassica napusBrassica napuse0
Material
Westar genotypee1
Interactor
Leptosphaeria maculansPlenodomus lingame0pathogen
Gene
PDF1.2e1
Outcome
inductione1
Direction
no inductione1

Verbatim

e0

“transcriptome profiles of Brassica napus (Bn) lines carrying one of four blackleg R genes (Rlm2, Rlm3, LepR1 & LepR2) in Topas or Westar background, during the early stages of infection by a Leptosphaeria maculans (Lm) isolate”

✓ located verbatim in the source · abstract, characters 304–530
e1

“Even in the absence of any R gene, effect of Topas genotype in enhanced defense, was also evident by the induction of PDF1.2 that started at a low level at 3 dai and peaked at 6 and 9 dai, while no induction in Westar genotype was observed at any of these time points”

✓ located verbatim in the source · abstract, characters 1855–2122

Title

Dissecting R gene and host genetic background effect on the Brassica napus defense response to Leptosphaeria maculans

Parham Haddadi; Nicholas J. Larkan; M. Hossein Borhan Scientific Reports 2019. doi:10.1038/s41598-019-43419-9

Other claims from this paper (11)

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