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Observationobservedoriginal resultno effectmeasured

Claim · model-written summary

No hypervariable region was identified in the protein-coding genes.

Taxon
ClerodendrumClerodendrumt0
Outcome
hypervariable region identified in protein coding genese0

Not reportedDirection

Verbatim

t0

“genus Clerodendrum Linn.”

✓ located verbatim in the source · title, characters 46–70
e0

“there was no hypervariable region identified in protein coding genes”

✓ located verbatim in the source · abstract, characters 1363–1431

Title

Conserved chloroplast genome sequences of the genus Clerodendrum Linn. (Lamiaceae) as a super-barcode

Haimei Chen; Haodong Chen; Bin Wang; et al. PLoS ONE 2023. doi:10.1371/journal.pone.0277809

Other claims from this paper (10)
Associationobservedoriginal resultno effectmeasured

Claim · model-written summary

P1 and capsid protein coding sequences did not account for the symptom differences in herbaceous hosts.

Interactor
PPVe0pathogen
Gene
P1 and capsid protein coding sequencese0
Outcome
symptom differencese0

Not reportedTaxonDirection

Verbatim

e0

“the P1 and capsid protein coding sequences, were not responsible for symptom differences between the two PPV isolates in herbaceous hosts.”

✓ located verbatim in the source · abstract, characters 647–785

Title

Identification of a pathogenicity determinant of Plum pox virus in the sequence encoding the C-terminal region of protein P3+6K1

Pilar Sáenz; José Luis Riechmann; Silvie Dallot; et al. Journal of General Virology 2000. doi:10.1099/0022-1317-81-3-557

Other claims from this paper (4)
Intervention effectobservedoriginal resultno effectmeasured

Claim · model-written summary

The cdkf;1 mutation did not globally downregulate the protein-coding transcriptome.

Taxon
ArabidopsisArabidopsist0
Treatment
cdkf;1 mutatione0
Outcome
protein-coding transcriptomee0
Direction
without causing global downregulatione0

Not reportedComparator

Verbatim

e0

“The cdkf;1 mutation also decreases the levels of both precursor and mature small RNAs without causing global downregulation of the protein-coding transcriptome”

✓ located verbatim in the source · abstract, characters 853–1012
t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 104–115

Title

CDKF;1 and CDKD Protein Kinases Regulate Phosphorylation of Serine Residues in the C-Terminal Domain of Arabidopsis RNA Polymerase II

Mohsen Hajheidari; Sara Farrona; Bruno Huettel; et al. The Plant Cell 2012. doi:10.1105/tpc.112.096834

Other claims from this paper (15)
Observationauthor interpretationoriginal resultno effectmeasured

Claim · model-written summary

Increased γ-zein protein level in modified o2 endosperm is not dependent on the presence of two γ-zein coding sequences.

Taxon
maizeZea mayst0
Gene
γ-zeine6
Outcome
increased level of γ-zein protein in modified o2 endosperme6
Qualifier
is not dependent on the presence of two γ-zein coding sequencese6

Verbatim

t0

“quality protein maize”

✓ located verbatim in the source · title, characters 28–49
e6

“the increased level of γ-zein protein in modified o2 endosperm is not dependent on the presence of two γ-zein coding sequences”

✓ located verbatim in the source · abstract, characters 1435–1561

Title

The biochemical genetics of quality protein maize

Gloverson Lamego Moro UA Campus Repository (The University of Arizona) 1996

Other claims from this paper (9)
Observationobservedoriginal resultno effectmeasured

Claim · model-written summary

The A. indica mitogenome shows no evidence for horizontal gene transfer of protein-coding genes.

Taxon
Aeginetia indicaAeginetia indicae0
Outcome
evidence for horizontal gene transfer of protein-coding genese1

Not reportedDirection

Verbatim

e0

“we assembled the mitogenome of the holoparasitic plant Aeginetia indica (Orobanchaceae) using Illumina sequencing reads”

✓ located verbatim in the source · abstract, characters 458–577
e1

“A. indica shows no evidence for horizontal gene transfer of protein-coding genes in its mitogenome”

✓ located verbatim in the source · abstract, characters 1573–1671

Title

Highly active repeat-mediated recombination in the mitogenome of the holoparasitic plant Aeginetia indica

Yan Zhong; Runxian Yu; Jingfang Chen; et al. Frontiers in Plant Science 2022. doi:10.3389/fpls.2022.988368

Other claims from this paper (7)
Observationobservedoriginal resultno effectmeasured

Claim · model-written summary

No gene was under positive selection in the Clerodendrum branch among 77 protein-coding genes.

Taxon
ClerodendrumClerodendrume0
Outcome
no gene under positive selectione0

Not reportedDirection

Verbatim

e0

“Selective pressure analyses of 77 protein-coding genes showed that there was no gene under positive selection in the Clerodendrum branch”

✓ located verbatim in the source · abstract, characters 1086–1222

Title

Conserved chloroplast genome sequences of the genus Clerodendrum Linn. (Lamiaceae) as a super-barcode

Haimei Chen; Haodong Chen; Bin Wang; et al. PLoS ONE 2023. doi:10.1371/journal.pone.0277809

Other claims from this paper (10)
Mechanismauthor interpretationoriginal resultno effectmeasured

Claim · model-written summary

Expression of genes coding some differentially accumulated proteins did not change concordantly with protein abundance, indicating posttranscriptional regulation.

Taxon
maizeZea mayst0
Outcome
concordant changese0
Qualifier
posttranscriptional regulatione0

Not reportedDirection

Verbatim

t0

“maize”

✓ located verbatim in the source · title, characters 42–47
e0

“Expression analysis of genes coding a few differentially accumulated proteins failed to reveal concordant changes, indicating posttranscriptional regulation”

✓ located verbatim in the source · abstract, characters 1271–1427

Title

Silicon might mitigate nickel toxicity in maize roots via chelation, detoxification, and membrane transport

Olha Lakhneko; Ivana Fialová; Roderik Fiala; et al. Ecotoxicology and Environmental Safety 2024. doi:10.1016/j.ecoenv.2024.117334

Other claims from this paper (6)
Observationobservedoriginal resultno effectmeasured

Claim · model-written summary

No protein coding sequences of Zanthoxylum bungeanum were significantly under positive selection by Ka/Ks.

Taxon
Z. bungeanumZanthoxylum bungeanume0
Outcome
positive selection by Ka/Kse5

Verbatim

e0

“an elite cultivar of Z. bungeanum using Illumina sequencing”

✓ located verbatim in the source · abstract, characters 400–459
e5

“We found no protein coding sequences that were significantly under positive selection by Ka/Ks”

✓ located verbatim in the source · abstract, characters 959–1053

Title

De novo transcriptome assembly of Zanthoxylum bungeanum using Illumina sequencing for evolutionary analysis and simple sequence repeat marker development

Shijing Feng; Lili Zhao; Zhenshan Liu; et al. Scientific Reports 2017. doi:10.1038/s41598-017-15911-7

Other claims from this paper (7)
Method / resourceobservedoriginal resultno effectmeasured

Claim · model-written summary

EST-SSRs from protein-coding sequence were no less variable than those from untranslated regions.

Taxon
HelianthusHelianthust0
Outcome
variablee1
Direction
no lesse1
Comparator
untranslated regionse1

Verbatim

t0

“Lessons from Helianthus”

✓ located verbatim in the source · title, characters 49–72
e1

“EST-SSRs whose primers were located within protein-coding sequence were more readily transferable than those derived from untranslated regions, and the former loci were no less variable than the latter”

✓ located verbatim in the source · abstract, characters 801–1002

Title

EST Databases as a Source for Molecular Markers: Lessons from Helianthus

C. H. Pashley Journal of Heredity 2006. doi:10.1093/jhered/esl013

Other claims from this paper (3)
Observationobservedoriginal resultno effectmeasured

Claim · model-written summary

Comparative genomic hybridization did not support enough contiguous protein-coding gene copy number variation to explain the genome size difference between Loh-0 and Col-0.

Taxon
Arabidopsis thalianaArabidopsis thalianat0
Material
Loh-0e0
Outcome
contiguous variation in copy number of protein-coding genese0
Comparator
Col-0e0

Not reportedDirection

Verbatim

t0

“Arabidopsis thaliana”

✓ located verbatim in the source · title, characters 66–86
e0

“Comparative genomic hybridization results of Loh-0 and Col-0 did not support contiguous variation in copy number of protein-coding genes on the scale needed to explain their observed genome size difference”

✓ located verbatim in the source · abstract, characters 1002–1207

Title

Large-scale polymorphism of heterochromatic repeats in the DNA of Arabidopsis thaliana

Jerry Davison; Anand Tyagi; Luca Comai BMC Plant Biology 2007. doi:10.1186/1471-2229-7-44

Other claims from this paper (7)

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