Search claims · PlantClaims

Method / resourceobservedoriginal resultpositivebasis n/a

Claim · model-written summary

The complete cp genome of a Zephyranthes subgenus Myostemma species was reported as a resource.

Taxon: ZephyranthesZephyranthese0
Outcome: complete cp genomee0
Value: one speciese0

Verbatim

e0
“the first time the complete cp genome of one species of the Zephyranthes subgenus Myostemma”
✓ located verbatim in the source · abstract, characters 1710–1801

Title

Characterization of the complete chloroplast genome of Zephyranthes phycelloides (Amaryllidaceae, tribe Hippeastreae) from Atacama region of Chile

Roberto Contreras-Díaz; Mariana Arias-Aburto; Liesbeth van den Brink Saudi Journal of Biological Sciences 2021. doi:10.1016/j.sjbs.2021.10.035

Other claims from this paper (14)

Observation The chloroplast genome measured 158,107 bp.
Observation The large single copy region measured 86,129 bp.
Observation The small single copy region measured 18,352 bp.
Observation The inverted repeats measured 26,813 bp.
Observation The chloroplast genome had 87 coding genes.
Observation The chloroplast genome had 8 rRNA genes.
Observation The chloroplast genome had 38 tRNA genes.
Observation The chloroplast genome had 4 pseudogenes.
Observation 64 SSRs were found in Z. phycelloides.
Observation 43 repeats were detected.
Observation Z. phycelloides formed a distinct subclade relative to Z. mesochloa.
Observation Average nucleotide variability between the two species was 0.02000.
Observation Seven highly variable loci were identified.
Observation Many SNPs distinguished the two species.

Method / resourceobservedoriginal resultmeasured

Claim · model-written summary

The complete chloroplast genome of B. albolineata is 139,326 bp long.

Taxon: B. albolineataBambusa albolineatae1
Outcome: complete CP genome sequencee2
Value: 139,326 bpe2

Verbatim

e1
“the complete chloroplast (CP) genome of B. albolineata was sequenced”
✓ located verbatim in the source · abstract, characters 313–381

e2
“The complete CP genome sequence was 139,326 bp”
✓ located verbatim in the source · abstract, characters 415–461

Title

The complete chloroplast genome sequence of Bambusa albolineata (bambusodae)

Zhiwen Deng; Qian Chen; Jun Wu; et al. Mitochondrial DNA Part B 2021. doi:10.1080/23802359.2021.1967798

Other claims from this paper (9)

Observationobservedoriginal resultmeasured

Claim · model-written summary

Complete cp genome of Hansenia forbesii LQ is 156,954 bp.

Taxon: Hansenia forbesiiHansenia forbesiie1
Material: LQe1
Outcome: complete cp genome sequencese1
Value: 156,954 bpe1

Verbatim

e1
“we assembled the complete cp genome sequences of Hansenia forbesii LQ (156,954 bp), H. forbesii QX (157,181 bp), H. forbesii WQ (156,975 bp)”
✓ located verbatim in the source · abstract, characters 262–402

Title

Comparative study on chloroplast genomes of three Hansenia forbesii varieties (Apiaceae)

Chenghao Zhu; Yuan Jiang; Yu Bai; et al. PLoS ONE 2023. doi:10.1371/journal.pone.0286587

Other claims from this paper (6)

Observation Complete cp genome of Hansenia forbesii QX is 157,181 bp.
Observation Complete cp genome of Hansenia forbesii WQ is 156,975 bp.
Observation The three cp genomes each contain 84 protein-coding genes, 37 tRNAs and 8 rRNAs.
Observation Hypervariable regions between the three cp genomes are atpF-atpH, petD and rps15-ycf1.
Observation H. forbesii LQ and WQ are closely related, followed by QX.
Method / resource The three varieties could be identified by the complete cp genome and the DNA barcode trnC-GCA-petN.

Observationobservedoriginal resultmeasured

Claim · model-written summary

Complete cp genome of Hansenia forbesii QX is 157,181 bp.

Taxon: Hansenia forbesiiHansenia forbesiie1
Material: QXe1
Outcome: complete cp genome sequencese1
Value: 157,181 bpe1

Verbatim

e1
“we assembled the complete cp genome sequences of Hansenia forbesii LQ (156,954 bp), H. forbesii QX (157,181 bp), H. forbesii WQ (156,975 bp)”
✓ located verbatim in the source · abstract, characters 262–402

Title

Comparative study on chloroplast genomes of three Hansenia forbesii varieties (Apiaceae)

Chenghao Zhu; Yuan Jiang; Yu Bai; et al. PLoS ONE 2023. doi:10.1371/journal.pone.0286587

Other claims from this paper (6)

Observation Complete cp genome of Hansenia forbesii LQ is 156,954 bp.
Observation Complete cp genome of Hansenia forbesii WQ is 156,975 bp.
Observation The three cp genomes each contain 84 protein-coding genes, 37 tRNAs and 8 rRNAs.
Observation Hypervariable regions between the three cp genomes are atpF-atpH, petD and rps15-ycf1.
Observation H. forbesii LQ and WQ are closely related, followed by QX.
Method / resource The three varieties could be identified by the complete cp genome and the DNA barcode trnC-GCA-petN.

Observationobservedoriginal resultmeasured

Claim · model-written summary

Complete cp genome of Hansenia forbesii WQ is 156,975 bp.

Taxon: Hansenia forbesiiHansenia forbesiie1
Material: WQe1
Outcome: complete cp genome sequencese1
Value: 156,975 bpe1

Verbatim

e1
“we assembled the complete cp genome sequences of Hansenia forbesii LQ (156,954 bp), H. forbesii QX (157,181 bp), H. forbesii WQ (156,975 bp)”
✓ located verbatim in the source · abstract, characters 262–402

Title

Comparative study on chloroplast genomes of three Hansenia forbesii varieties (Apiaceae)

Chenghao Zhu; Yuan Jiang; Yu Bai; et al. PLoS ONE 2023. doi:10.1371/journal.pone.0286587

Other claims from this paper (6)

Observation Complete cp genome of Hansenia forbesii LQ is 156,954 bp.
Observation Complete cp genome of Hansenia forbesii QX is 157,181 bp.
Observation The three cp genomes each contain 84 protein-coding genes, 37 tRNAs and 8 rRNAs.
Observation Hypervariable regions between the three cp genomes are atpF-atpH, petD and rps15-ycf1.
Observation H. forbesii LQ and WQ are closely related, followed by QX.
Method / resource The three varieties could be identified by the complete cp genome and the DNA barcode trnC-GCA-petN.

Observationobservedoriginal resultmeasured

Claim · model-written summary

The complete chloroplast genome is 158,641 bp long.

Taxon: PomegranatePunica granatumt0
Outcome: cp genomee0
Value: 158,641 bpe0

Verbatim

e0
“The complete cp genome is 158,641 bp in length.”
✓ located verbatim in the source · abstract, characters 307–354

t0
“Pomegranate”
✓ located after whitespace/quote normalisation · title, characters 44–55

Title

The complete chloroplast genome sequence of pomegranate ‘Bhagwa’

Ming Yan; Xueqing Zhao; Yujie Zhao; et al. Mitochondrial DNA Part B 2019. doi:10.1080/23802359.2019.1617047

Other claims from this paper (3)

Method / resourceobservedoriginal resultmeasured

Claim · model-written summary

The complete chloroplast genome was assembled.

Taxon: F. formosanaFicus formosanae0
Outcome: complete chloroplast (cp) genomee0

Not reportedValue

Verbatim

e0
“we assembled the complete chloroplast (cp) genome of F. formosana”
✓ located verbatim in the source · abstract, characters 110–175

Title

The complete chloroplast genome sequence of Ficus formosana Maxim (Moraceae) from Guangzhou, China

Shiqiang Xu; Song Guo; Dongdong Fan; et al. Mitochondrial DNA Part B 2021. doi:10.1080/23802359.2021.1934170

Other claims from this paper (7)

Observation The chloroplast genome measured 160,606 bp.
Observation The chloroplast genome had 35.90% GC content.
Observation The large single-copy region measured 88,668 bp.
Observation The small single-copy region measured 20,140 bp.
Observation The inverted repeat regions measured 25,899 bp.
Observation The genome encoded protein-coding, tRNA and rRNA genes.
Observation Phylogenetic analysis placed F. formosana with Ficus erecta.

Method / resourceobservedoriginal resultmeasured

Claim · model-written summary

The three varieties could be identified by the complete cp genome and the DNA barcode trnC-GCA-petN.

Taxon: H. forbesiiHansenia forbesiie5
Gene: trnC-GCA-petNe5
Outcome: could be identifiede5
Comparator: complete cp genomee5

Verbatim

e5
“the three varieties of H. forbesii could be identified by the complete cp genome and specific DNA barcode (trnC-GCA-petN)”
✓ located verbatim in the source · abstract, characters 701–822

Title

Comparative study on chloroplast genomes of three Hansenia forbesii varieties (Apiaceae)

Chenghao Zhu; Yuan Jiang; Yu Bai; et al. PLoS ONE 2023. doi:10.1371/journal.pone.0286587

Other claims from this paper (6)

Observation Complete cp genome of Hansenia forbesii LQ is 156,954 bp.
Observation Complete cp genome of Hansenia forbesii QX is 157,181 bp.
Observation Complete cp genome of Hansenia forbesii WQ is 156,975 bp.
Observation The three cp genomes each contain 84 protein-coding genes, 37 tRNAs and 8 rRNAs.
Observation Hypervariable regions between the three cp genomes are atpF-atpH, petD and rps15-ycf1.
Observation H. forbesii LQ and WQ are closely related, followed by QX.

Method / resourceobservedoriginal resultbasis n/a

Claim · model-written summary

The complete chloroplast genome was reported.

Taxon: G. manshuricaGentiana manshuricae0
Outcome: complete chloroplast (cp) genomee0

Not reportedComparatorValue

Verbatim

e0
“we first reported the complete chloroplast (cp) genome of G. manshurica”
✓ located verbatim in the source · abstract, characters 98–169

Title

The complete chloroplast genome and phylogenetic analysis of Gentiana manshurica Kitag from China

Yu Liang; Xiangxiao Meng; Zejing Mu; et al. Mitochondrial DNA Part B 2020. doi:10.1080/23802359.2020.1745107

Other claims from this paper (11)

Observation The chloroplast genome length was 149,185 bp.
Observation The LSC region was 81,347 bp.
Observation The SSC region was 17,268 bp.
Observation Each inverted repeat region was 25,285 bp.
Observation The chloroplast genome contained 130 genes.
Observation The chloroplast genome contained 85 protein-coding genes.
Observation The chloroplast genome contained 37 tRNA genes.
Observation The chloroplast genome contained 8 rRNA genes.
Observation Overall GC content was 37.61%.
Observation Phylogenetic analysis placed G. manshurica in tribe Gentianeae.
Observation G. manshurica was closely related to other Gentiana species.

Method / resourceobservedoriginal resultbasis n/a

Claim · model-written summary

The complete chloroplast genome sequence was determined.

Taxon: P. grandilobaPorella grandilobae0
Outcome: complete chloroplast (cp) genome sequencee0

Not reportedComparator

Verbatim

e0
“we determined the complete chloroplast (cp) genome sequence of P. grandiloba”
✓ located verbatim in the source · abstract, characters 107–183

Title

Complete chloroplast genome sequence of the liverwort, Porella grandiloba Lindb. (Porellaceae)

Shin Ae Lee; Seung-Jin Park; Hyemin Seo; et al. Mitochondrial DNA Part B 2023. doi:10.1080/23802359.2023.2225655

Other claims from this paper (10)

Observation The chloroplast genome was 121,433 bp long.
Observation The large single-copy region was 83,039 bp.
Observation The small single-copy region was 19,586 bp.
Observation Each inverted repeat was 9,404 bp.
Observation Genome annotation predicted 131 genes.
Observation The genome contained 84 predicted protein-coding genes.
Observation The genome contained 36 predicted tRNA genes.
Observation The genome contained eight predicted rRNA genes.
Observation P. grandiloba was sister to P. perrottetiana in the maximum likelihood tree.
Observation P. grandiloba and P. perrottetiana formed a clade with Radula japonica.

“complete cp genome”

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