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Observationobservedoriginal resultmixedmeasured

Claim · model-written summary

The maize arogenate dehydrogenase genes had overlapping but differential expression patterns.

Outcome: expression patternse0
Direction: differentiale0

Not reportedTaxon

Verbatim

e0
“Overlapping but differential expression patterns”
✓ located verbatim in the source · abstract, characters 811–859

Title

Identification and characterization of the maize arogenate dehydrogenase gene family

David R. Holding; Robert B. Meeley; Jan Hazebroek; et al. Journal of Experimental Botany 2010. doi:10.1093/jxb/erq179

Other claims from this paper (8)

Observationobservedoriginal resultmeasured

Claim · model-written summary

Strigolactone signalling candidate genes showed differential expression patterns in Arabidopsis max mutants.

Taxon: ArabidopsisArabidopsist0
Material: max mutantse2
Outcome: differential expression patternse2

Verbatim

t0
“Strigolactone Signaling Genes Showing Differential Expression Patterns in Arabidopsis max Mutants”
✓ located verbatim in the source · title, characters 0–97

e2
“We identified SL signaling candidate genes that showed differential expression patterns in max mutants”
✓ located verbatim in the source · abstract, characters 588–690

Title

Strigolactone Signaling Genes Showing Differential Expression Patterns in Arabidopsis max Mutants

Manu Kumar; Inyoung Kim; Yeon-Ki Kim; et al. Plants 2019. doi:10.3390/plants8090352

Other claims from this paper (3)

Observationobservedoriginal resultmeasured

Claim · model-written summary

The differentially expressed fragments were categorized into 13 differential gene expression patterns.

Taxon: MaizeZea mayst0
Outcome: differential gene expression patternse0
Value: 13e0

Verbatim

e0
“These DEFs were categorized into 13 differential gene expression patterns”
✓ located verbatim in the source · abstract, characters 550–623

t0
“Maize”
✓ located verbatim in the source · title, characters 87–92

Title

Differential Gene Expression Responding to Low Phosphate Stress in Leaves and Roots of Maize by cDNA‐SRAP

Lei Yan; Liang Su; Rui Li; et al. BioMed Research International 2020. doi:10.1155/2020/8420151

Other claims from this paper (7)

Observationobservedoriginal resultmeasured

Claim · model-written summary

ADF genes show differential expression patterns among tomato organs.

Taxon: Solanum lycopersicumSolanum lycopersicumt0
Organ / stage: different organse2
Outcome: differential expression patternse2

Verbatim

t0
“Solanum lycopersicum L”
✓ located verbatim in the source · title, characters 93–115

e2
“differential expression patterns were found in different organs”
✓ located verbatim in the source · abstract, characters 263–326

Title

Genome-Wide Identification, Characterization and Expression Profiling of ADF Family Genes in Solanum lycopersicum L.

Khadiza Khatun; Arif Robin; Jong-In Park; et al. Genes 2016. doi:10.3390/genes7100079

Other claims from this paper (12)

Observation Eleven ADF genes were identified in tomato by genome-wide analysis.
Observation SlADF6 is preferentially expressed in tomato roots.
Observation SlADF1, SlADF3 and SlADF10 are predominately expressed in tomato flowers compared with other organs.
Observation SlADF1, SlADF3 and SlADF10 are specifically expressed in the tomato stamen compared with other flower parts.
Observation SlADF3 and SlADF11 show comparatively higher expression at early fruit developmental stages of tomato.
Observation SlADF5 and SlADF8 show relatively higher expression five days after the breaker stage of tomato fruit development.
Intervention effect Six tomato ADF genes are induced by cold and heat.
Intervention effect Seven tomato ADF genes are induced by drought.
Intervention effect Five tomato ADF genes are induced by NaCl.
Intervention effect Four tomato ADF genes are induced by abscisic acid (ABA).
Intervention effect Four tomato ADF genes are induced by jasmonic acid (JA).
Intervention effect Four tomato ADF genes are induced by wounding.

Observationobservedoriginal resultmeasured

Claim · model-written summary

CsBT genes had differential expression patterns among cucumber tissues.

Taxon: cucumberCucumis sativuse0
Organ / stage: tissuese0
Gene: CsBT genese0
Outcome: differential expression patternse0

Verbatim

e0
“CsBT genes displayed differential expression patterns in cucumber tissues”
✓ located verbatim in the source · abstract, characters 732–805

Title

Comprehensive genomic analysis and expression profiling of the BTB and TAZ (BT) genes in cucumber (Cucumis sativus L.)

Yong Zhou; Guanghua Li; Lin Zhang; et al. Czech Journal of Genetics and Plant Breeding 2019. doi:10.17221/34/2019-cjgpb

Other claims from this paper (5)

Observation Three cucumber BT genes, CsBT1-3, were identified.
Observation The cucumber BT genes were unevenly distributed over two of seven chromosomes.
Observation BT proteins from cucumber, Arabidopsis, apple, tomato and rice formed two motif-defined groups.
Observation BT gene structures differed among cucumber, Arabidopsis and rice.
Intervention effect Cold, salt and drought stresses regulated cucumber CsBT gene expression.

Observationobservedoriginal resultmeasured

Claim · model-written summary

PtPYRL members have differential expression patterns.

Taxon: poplarPopulust0
Gene: PtPYRL memberse1
Outcome: expression patternse1

Verbatim

t0
“gene family in poplar”
✓ located verbatim in the source · title, characters 66–87

e1
“PtPYRL members have differential expression patterns”
✓ located verbatim in the source · abstract, characters 463–515

Title

A survey of the pyrabactin resistance-like abscisic acid receptor gene family in poplar

Jingling Yu; Hejuan Li; Yajing Peng; et al. Plant Signaling & Behavior 2017. doi:10.1080/15592324.2017.1356966

Other claims from this paper (3)

Method / resourceobservedoriginal resultmeasured

Claim · model-written summary

RT-qPCR confirmed differential expression patterns of DEGs.

Taxon: RiceOryza sativat0
Outcome: differential expression patterns of the DEGse0
Value: DEGse0

Not reportedDirection

Verbatim

e0
“In addition, RT-qPCR analysis confirmed differential expression patterns of the DEGs.”
✓ located verbatim in the source · abstract, characters 2022–2107

t0
“Rice”
✓ located verbatim in the source · title, characters 81–85

Title

Transcriptome and Physio-Biochemical Profiling Reveals Differential Responses of Rice Cultivars at Reproductive-Stage Drought Stress

Simardeep Kaur; Karishma Seem; Naveen Duhan; et al. International Journal of Molecular Sciences 2023. doi:10.3390/ijms24021002

Other claims from this paper (7)

Observationobservedoriginal resultmeasured

Claim · model-written summary

GhMAPKKKs show differential expression patterns among cotton tissues.

Taxon: cottonGossypium hirsutume6
Organ / stage: tissuese6
Gene: GhMAPKKKse6
Outcome: differential expression patternse6

Verbatim

e6
“these GhMAPKKKs show differential expression patterns in cotton tissues”
✓ located verbatim in the source · abstract, characters 862–933

Title

Genome-wide identification and functional characterization of cotton (Gossypium hirsutum) MAPKKK gene family in response to drought stress

Jing-Bo Zhang; Xin-Peng Wang; Ya-Chao Wang; et al. BMC Plant Biology 2020. doi:10.1186/s12870-020-02431-2

Other claims from this paper (15)

Observation 157 nonredundant GhMAPKKKs were identified in cotton.
Observation 87 GhMAPKKKs belong to the RAF subfamily in cotton.
Observation 46 GhMAPKKKs belong to the MEKK subfamily in cotton.
Observation 24 GhMAPKKKs belong to the ZIK subfamily in cotton.
Observation GhMAPKKK genes are unevenly distributed on 26 chromosomes in cotton.
Observation Segmental duplication is the major route to enlargement of the cotton MAPKKK family.
Observation Members of the same GhMAPKKK subfamily share similar gene structure and motif composition.
Observation Many cis-elements relevant to growth and stress response are found in GhMAPKKK promoters.
Intervention effect Transcription levels of most cotton genes were markedly altered under heat, cold and PEG treatments.
Intervention effect Expression of some GhMAPKKKs was induced in cotton under drought stress.
Intervention effect Gene-silenced cotton of GhRAF4 and GhMEKK12 displayed decreased tolerance to drought stress.
Intervention effect Malondialdehyde content was higher in gene-silenced cotton than in controls under drought stress.
Intervention effect Proline accumulation and relative leaf water content were lower in gene-silenced cotton than in controls under drought stress.
Intervention effect Activities of SOD and POD were lower in gene-silenced cotton than in controls under drought stress.
Observation Some cotton GhMAPKKKs play important roles in drought tolerance.

Observationobservedoriginal resultmeasured

Claim · model-written summary

Soybean Aox upstream regions drove differential tissue expression patterns in Arabidopsis.

Taxon: ArabidopsisArabidopsise3
Outcome: differential tissue expression patternse3

Verbatim

e3
“Reporter gene analysis in Arabidopsis plants showed differential tissue expression patterns driven by the three upstream regions”
✓ located verbatim in the source · abstract, characters 966–1094

Title

Analysis of the Alternative Oxidase Promoters from Soybean

David Thirkettle-Watts; Tulene C. McCabe; Rachel Clifton; et al. PLANT PHYSIOLOGY 2003. doi:10.1104/pp.103.028183

Other claims from this paper (6)

Associationauthor interpretationoriginal resultmeasured

Claim · model-written summary

The distinct resistance patterns may be associated with differential expression.

Outcome: differential gene expression patternse0
Qualifier: may be associatede0

Not reportedTaxonGeneDirection

Verbatim

e0
“which may be associated with their differential gene expression patterns”
✓ located verbatim in the source · abstract, characters 603–675

t0
“wheat”
✓ located verbatim in the source · title, characters 120–125

Title

Two functional CC‐NBS‐LRR proteins from rye chromosome 6RS confer differential age‐related powdery mildew resistance to wheat

Guohao Han; Hong Liu; Shanying Zhu; et al. Plant Biotechnology Journal 2023. doi:10.1111/pbi.14165

Other claims from this paper (6)

Observation PmTR1 and PmTR3 were isolated and validated on rye chromosome 6RS.
Observation PmTR1 confers resistance from the three-leaf stage.
Observation PmTR3 confers all-stage resistance.
Intervention effect PMTR1 CC, CC-NBS and CC-LRR fragments induced cell death in Nicotiana benthamiana.
Intervention effect PMTR3 CC and full-length fragments induced cell death in Nicotiana benthamiana.
Observation CC and NBS fragments had distinct interaction activities.

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