By organism › Green plants › Pelliaceae › Apopellia

Method / resourceobservedoriginal resultmeasured

Claim · model-written summary

Hybrid assembly produced repeat rich Pellia and Apopellia mitogenomes.

Taxon: Pellia and ApopelliaPelliaApopelliae0
Outcome: assembly of repeat-rich mitogenomese0

Not reportedComparator

Verbatim

e0
“Hybrid assembly, using both short- and long-read technologies enabled the assembly of repeat-rich mitogenomes of Pellia and Apopellia”
✓ located verbatim in the source · abstract, characters 295–428

Title

The organellar genomes of Pellidae (Marchantiophyta): the evidence of cryptic speciation, conflicting phylogenies and extraordinary reduction of mitogenomes in simple thalloid liverwort lineage

Łukasz Paukszto; Piotr Górski; Katarzyna Krawczyk; et al. Scientific Reports 2023. doi:10.1038/s41598-023-35269-3

Other claims from this paper (7)

Observationobservedoriginal resultmeasured

Claim · model-written summary

Apopellia mitogenomes were reduced in length only in intergenic spacers.

Taxon: ApopelliaApopelliae0
Outcome: reduction of lengthe0
Direction: reductione0
Qualifier: only intergenic spacerse0

Verbatim

t0
“Pellidae”
✓ located verbatim in the source · title, characters 26–34

e0
“mitogenomes of Pellia and Apopellia revealing extraordinary reduction of length in the latter which impacts only intergenic spacers”
✓ located verbatim in the source · abstract, characters 393–524

Title

The organellar genomes of Pellidae (Marchantiophyta): the evidence of cryptic speciation, conflicting phylogenies and extraordinary reduction of mitogenomes in simple thalloid liverwort lineage

Łukasz Paukszto; Piotr Górski; Katarzyna Krawczyk; et al. Scientific Reports 2023. doi:10.1038/s41598-023-35269-3

Other claims from this paper (7)

Method / resource Hybrid assembly produced repeat rich Pellia and Apopellia mitogenomes.
Observation Apopellia mitogenomes were the smallest known among liverworts, 109 k bp, while retaining all introns.
Observation Apopellia mitogenome lost one tRNA gene.
Observation The tRNA gene loss did not affect mitochondrial protein coding gene codon usage.
Observation Apopellia and Pellia differed in plastome coding sequence codon usage despite identical tRNA gene content.
Method / resource Complete mitochondrial or plastid genome super barcodes identified all cryptic lineages.
Method / resource Mitogenomes were more efficient than plastomes for species delimitation in some cases.

Observationobservedoriginal resultmeasured

Claim · model-written summary

Apopellia mitogenomes were the smallest known among liverworts, 109 k bp, while retaining all introns.

Taxon: ApopelliaApopelliae0
Outcome: mitogenomese0
Direction: smalleste0
Value: 109 k bpe0
Qualifier: retaining all intronse0

Verbatim

e0
“mitogenomes of Apopellia were revealed to be the smallest among all known liverworts-109 k bp, despite retaining all introns”
✓ located verbatim in the source · abstract, characters 530–654

Title

The organellar genomes of Pellidae (Marchantiophyta): the evidence of cryptic speciation, conflicting phylogenies and extraordinary reduction of mitogenomes in simple thalloid liverwort lineage

Łukasz Paukszto; Piotr Górski; Katarzyna Krawczyk; et al. Scientific Reports 2023. doi:10.1038/s41598-023-35269-3

Other claims from this paper (7)

Method / resource Hybrid assembly produced repeat rich Pellia and Apopellia mitogenomes.
Observation Apopellia mitogenomes were reduced in length only in intergenic spacers.
Observation Apopellia mitogenome lost one tRNA gene.
Observation The tRNA gene loss did not affect mitochondrial protein coding gene codon usage.
Observation Apopellia and Pellia differed in plastome coding sequence codon usage despite identical tRNA gene content.
Method / resource Complete mitochondrial or plastid genome super barcodes identified all cryptic lineages.
Method / resource Mitogenomes were more efficient than plastomes for species delimitation in some cases.

Observationobservedoriginal resultmeasured

Claim · model-written summary

Apopellia mitogenome lost one tRNA gene.

Taxon: ApopelliaApopelliae0
Gene: tRNA genee0
Outcome: loss of one tRNA genee0
Value: onee0

Verbatim

e0
“loss of one tRNA gene in Apopellia mitogenome”
✓ located verbatim in the source · abstract, characters 682–727

Title

The organellar genomes of Pellidae (Marchantiophyta): the evidence of cryptic speciation, conflicting phylogenies and extraordinary reduction of mitogenomes in simple thalloid liverwort lineage

Łukasz Paukszto; Piotr Górski; Katarzyna Krawczyk; et al. Scientific Reports 2023. doi:10.1038/s41598-023-35269-3

Other claims from this paper (7)

Observationobservedoriginal resultmeasured

Claim · model-written summary

The tRNA gene loss did not affect mitochondrial protein coding gene codon usage.

Taxon: ApopelliaApopelliae0
Gene: tRNA genee0
Outcome: codon usage pattern of mitochondrial protein coding genese0
Direction: no impacte0

Verbatim

t0
“Pellidae”
✓ located verbatim in the source · title, characters 26–34

e0
“loss of one tRNA gene in Apopellia mitogenome, although it had no impact on the codon usage pattern of mitochondrial protein coding genes”
✓ located verbatim in the source · abstract, characters 682–819

Title

The organellar genomes of Pellidae (Marchantiophyta): the evidence of cryptic speciation, conflicting phylogenies and extraordinary reduction of mitogenomes in simple thalloid liverwort lineage

Łukasz Paukszto; Piotr Górski; Katarzyna Krawczyk; et al. Scientific Reports 2023. doi:10.1038/s41598-023-35269-3

Other claims from this paper (7)

Method / resource Hybrid assembly produced repeat rich Pellia and Apopellia mitogenomes.
Observation Apopellia mitogenomes were reduced in length only in intergenic spacers.
Observation Apopellia mitogenomes were the smallest known among liverworts, 109 k bp, while retaining all introns.
Observation Apopellia mitogenome lost one tRNA gene.
Observation Apopellia and Pellia differed in plastome coding sequence codon usage despite identical tRNA gene content.
Method / resource Complete mitochondrial or plastid genome super barcodes identified all cryptic lineages.
Method / resource Mitogenomes were more efficient than plastomes for species delimitation in some cases.

Observationobservedoriginal resultmeasured

Claim · model-written summary

Apopellia and Pellia differed in plastome coding sequence codon usage despite identical tRNA gene content.

Taxon: Apopellia and PelliaPelliaApopelliae0
Outcome: codon usage by plastome CDSse0
Direction: differe0
Qualifier: identical tRNA gene contente0

Verbatim

e0
“Apopellia and Pellia differ in codon usage by plastome CDSs, despite identical tRNA gene content”
✓ located verbatim in the source · abstract, characters 852–948

Title

The organellar genomes of Pellidae (Marchantiophyta): the evidence of cryptic speciation, conflicting phylogenies and extraordinary reduction of mitogenomes in simple thalloid liverwort lineage

Łukasz Paukszto; Piotr Górski; Katarzyna Krawczyk; et al. Scientific Reports 2023. doi:10.1038/s41598-023-35269-3

Other claims from this paper (7)

Method / resource Hybrid assembly produced repeat rich Pellia and Apopellia mitogenomes.
Observation Apopellia mitogenomes were reduced in length only in intergenic spacers.
Observation Apopellia mitogenomes were the smallest known among liverworts, 109 k bp, while retaining all introns.
Observation Apopellia mitogenome lost one tRNA gene.
Observation The tRNA gene loss did not affect mitochondrial protein coding gene codon usage.
Method / resource Complete mitochondrial or plastid genome super barcodes identified all cryptic lineages.
Method / resource Mitogenomes were more efficient than plastomes for species delimitation in some cases.

Method / resourceobservedoriginal resultmeasured

Claim · model-written summary

Complete mitochondrial or plastid genome super barcodes identified all cryptic lineages.

Taxon: Apopellia and PelliaPelliaApopelliae0
Outcome: identification of all cryptic lineagese0
Value: alle0

Verbatim

e0
“super-barcodes, based on complete mitochondrial or plastid genomes sequences enable identification of all cryptic lineages within Apopellia and Pellia genera”
✓ located verbatim in the source · abstract, characters 1267–1424

Title

The organellar genomes of Pellidae (Marchantiophyta): the evidence of cryptic speciation, conflicting phylogenies and extraordinary reduction of mitogenomes in simple thalloid liverwort lineage

Łukasz Paukszto; Piotr Górski; Katarzyna Krawczyk; et al. Scientific Reports 2023. doi:10.1038/s41598-023-35269-3

Other claims from this paper (7)

Method / resource Hybrid assembly produced repeat rich Pellia and Apopellia mitogenomes.
Observation Apopellia mitogenomes were reduced in length only in intergenic spacers.
Observation Apopellia mitogenomes were the smallest known among liverworts, 109 k bp, while retaining all introns.
Observation Apopellia mitogenome lost one tRNA gene.
Observation The tRNA gene loss did not affect mitochondrial protein coding gene codon usage.
Observation Apopellia and Pellia differed in plastome coding sequence codon usage despite identical tRNA gene content.
Method / resource Mitogenomes were more efficient than plastomes for species delimitation in some cases.

Apopellia 7 claims

7 claims