Intervention effectmodel-written summary

Eight SOS3 genes showed a significant expression decline after salt treatment.

A claim from Genome-wide analysis reveals the spatiotemporal expression patterns of SOS3 genes in the maize B73 genome in response to salt stress · 2022

Intervention effectobservedoriginal resultnegativesignificant (as stated)measured

Claim · model-written summary

Taxon: maizeZea mayst0
Treatment: salt treatmente1
Gene: SOS3 genese0
Outcome: SOS3 genese0
Direction: declinee0
Value: eighte0

Not reportedMaterialCompoundOrgan / stageInteractorInteractor roleSecond interactorSecond interactor roleComparatorSettingQualifier

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

*Zea mays* · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0
“eight SOS3 genes showed a significant decline”
✓ located verbatim in the source · abstract, characters 1285–1330

t0
“maize B73 genome”
✓ located verbatim in the source · title, characters 89–105

e1
“after salt treatment”
✓ located verbatim in the source · abstract, characters 1254–1274

Title

Genome-wide analysis reveals the spatiotemporal expression patterns of SOS3 genes in the maize B73 genome in response to salt stress

Yunying Cao; Tingyu Shan; Hui Fang; et al. BMC Genomics 2022. doi:10.1186/s12864-021-08287-6

Other claims from this paper (12)

Observation The maize B73 genome contains 59 identified SOS3 genes.
Observation SOS3 proteins were classified into five subfamilies.
Association SOS3 phylogenetic grouping was closely related to intron mode.
Observation Most SOS3 genes within a group shared motifs and exon-intron structures.
Observation The SOS3 genes were unequally distributed on five B73 chromosomes.
Observation Six SOS3 genes were identified as repeated genes.
Observation Twelve SOS3 gene pairs were segmentally duplicated.
Intervention effect Ten selected SOS3 genes were differentially expressed within 48 hours after salt treatment.
Intervention effect Zm00001d025938 did not show a significant decline after salt treatment.
Intervention effect Zm00001d049665 did not show a significant decline after salt treatment.
Observation Most examined gene products localized to chloroplasts.
Observation Some examined gene products localized to the cell membrane and nucleus.

Record rev-47f6638fcf1bbcf8435ec6e810658e95bb96384ed695abf0eabc048a772f50b3 · schema claims-v0.9 · position 9 in the model’s answer

salinity · molecular: expression · Zea mays (maize)Positive and negative results

32 papers: 22 positive, 10 negative or no effect

9 papers in the same direction as this claim · 22 in the opposite direction

positive
NaCl salinity rapidly activated ZmEXPA1 gene transcription in maize leaves before extension growth resumed.
Changes in expansin gene expression, IAA content, and extension growth of leaf cells in maize plants subjected to salinity · 2008
Opposite direction
positive
Salt stress significantly upregulated ZmSOS1, ZmSOS2 and ZmNHX in JNY658 roots.
Endogenous hormones improve the salt tolerance of maize (Zea mays L.) by inducing root architecture and ion balance optimizations · 2022 · compared with control group
Opposite direction
positive
Saline–alkaline treatment strongly upregulated ZmNAC89 expression.
The Transcription Factor ZmNAC89 Gene Is Involved in Salt Tolerance in Maize (Zea mays L.) · 2023
Opposite direction
positive
Ssadh1 expression increased at 3 h of salt stress.
Effect of Salt Stress on the Activity, Expression, and Promoter Methylation of Succinate Dehydrogenase and Succinic Semialdehyde Dehydrogenase in Maize (Zea mays L.) Leaves · 2022
Opposite direction
positive
ZmNAC1 expression was induced by salt.
Cloning and characterization of a transcription factor ZmNAC1 in maize (Zea mays) · 2009
Opposite direction
positive
GUS expression was stronger under lower salt concentration.
Agrobacterium-mediated genetic transformation of a tropical elite maize line · 2017
Opposite direction
positive
Anthocyanin synthesis related genes were strongly induced under salt treatment in RILpur–W22, consistent with its salt tolerance phenotype.
Transcriptome Analysis Revealed the Potential Molecular Mechanism of Anthocyanidins’ Improved Salt Tolerance in Maize Seedlings · 2023
Opposite direction
positive
ZmGPP expression was up-regulated in shoots and roots under high salt stresses.
Molecular cloning and characterization of a novel H⁺-translocating pyrophosphatase gene inZea mays · 2008
Opposite direction

23 papers more in this group

See all 32 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.

Other papers on the same question

salinity · molecular: expression · Zea mays (maize)Positive and negative results