By organism › Green plants › Aquifoliaceae › Ilex crenata

Observationobservedoriginal resultmeasured

Claim · model-written summary

Most Ilex crenata isolates of Berkeleyomyces basicola belonged to two near-clonal groups.

Taxon: I. crenataIlex crenatae0
Interactor: B. basicolaBerkeleyomyces basicolae0pathogen
Outcome: two near‐clonal groupse0

Verbatim

e0
“Most I. crenata isolates belonged to two near‐clonal groups within B. basicola”
✓ located verbatim in the source · abstract, characters 907–985

Title

Genetic Variation, qPCR ‐Based Detection and Virulence of Berkeleyomyces Species in Ilex crenata

E. Geukens; K. Van Poucke; A. Haegeman; et al. Journal of Phytopathology 2025. doi:10.1111/jph.70173

Other claims from this paper (6)

Intervention effect Berkeleyomyces rouxiae and B. basicola caused similar disease levels on Ilex crenata.
Association Virulence differences among Berkeleyomyces isolates on Ilex crenata were smaller and related to the host of origin.
Method / resource A qPCR assay on the 60S locus had a sensitivity down to 100 fg DNA.
Method / resource A qPCR assay on the rDNA ITS locus had a sensitivity down to 10 fg DNA and can be run in duplex format.
Observation The qPCR assays were successfully used to quantify Berkeleyomyces in Ilex crenata.
Recommendation The qPCR assays show potential for use in other hosts and in epidemiological studies.

Intervention effectobservedoriginal resultno effectmeasured

Claim · model-written summary

Berkeleyomyces rouxiae and B. basicola caused similar disease levels on Ilex crenata.

Taxon: I. crenataIlex crenatae0
Treatment: B. rouxiaee0
Interactor: B. basicolaBerkeleyomyces basicolae0pathogen
Second interactor: B. rouxiaeBerkeleyomyces rouxiaee0pathogen
Outcome: disease levelse0
Direction: no_changeinferrede0
Comparator: B. basicolae0

Verbatim

e0
“Virulence testing revealed that B. basicola and B. rouxiae could incite similar disease levels in I. crenata”
✓ located verbatim in the source · abstract, characters 988–1096

Title

Genetic Variation, qPCR ‐Based Detection and Virulence of Berkeleyomyces Species in Ilex crenata

E. Geukens; K. Van Poucke; A. Haegeman; et al. Journal of Phytopathology 2025. doi:10.1111/jph.70173

Other claims from this paper (6)

Associationobservedoriginal resultmeasured

Claim · model-written summary

Virulence differences among Berkeleyomyces isolates on Ilex crenata were smaller and related to the host of origin.

Taxon: I. crenataIlex crenatae0
Treatment: host of origine1
Outcome: differences in virulencee1
Direction: smallere1

Verbatim

e0
“Virulence testing revealed that B. basicola and B. rouxiae could incite similar disease levels in I. crenata”
✓ located verbatim in the source · abstract, characters 988–1096

e1
“smaller differences in virulence related to the host of origin”
✓ located verbatim in the source · abstract, characters 1104–1166

Title

Genetic Variation, qPCR ‐Based Detection and Virulence of Berkeleyomyces Species in Ilex crenata

E. Geukens; K. Van Poucke; A. Haegeman; et al. Journal of Phytopathology 2025. doi:10.1111/jph.70173

Other claims from this paper (6)

Observation Most Ilex crenata isolates of Berkeleyomyces basicola belonged to two near-clonal groups.
Intervention effect Berkeleyomyces rouxiae and B. basicola caused similar disease levels on Ilex crenata.
Method / resource A qPCR assay on the 60S locus had a sensitivity down to 100 fg DNA.
Method / resource A qPCR assay on the rDNA ITS locus had a sensitivity down to 10 fg DNA and can be run in duplex format.
Observation The qPCR assays were successfully used to quantify Berkeleyomyces in Ilex crenata.
Recommendation The qPCR assays show potential for use in other hosts and in epidemiological studies.

Method / resourceobservedoriginal resultmeasured

Claim · model-written summary

A qPCR assay on the 60S locus had a sensitivity down to 100 fg DNA.

Taxon: Ilex crenataIlex crenatat0
Gene: 60S locuse0
Outcome: sensitivitye0
Value: 100 fg DNAe0

Verbatim

t0
“Ilex crenata”
✓ located verbatim in the source · abstract, characters 188–200

e0
“one set on the 60S locus (with sensitivity down to 100 fg DNA)”
✓ located verbatim in the source · abstract, characters 1366–1428

Title

Genetic Variation, qPCR ‐Based Detection and Virulence of Berkeleyomyces Species in Ilex crenata

E. Geukens; K. Van Poucke; A. Haegeman; et al. Journal of Phytopathology 2025. doi:10.1111/jph.70173

Other claims from this paper (6)

Method / resourceobservedoriginal resultmeasured

Claim · model-written summary

A qPCR assay on the rDNA ITS locus had a sensitivity down to 10 fg DNA and can be run in duplex format.

Taxon: Ilex crenataIlex crenatat0
Gene: rDNA ITS locuse0
Outcome: sensitivitye0
Value: 10 fg DNAe0
Qualifier: which can be run in duplex formate0

Verbatim

t0
“Ilex crenata”
✓ located verbatim in the source · abstract, characters 188–200

e0
“another set on the rDNA ITS locus (with sensitivity down to 10 fg DNA), which can be run in duplex format”
✓ located verbatim in the source · abstract, characters 1434–1539

Title

Genetic Variation, qPCR ‐Based Detection and Virulence of Berkeleyomyces Species in Ilex crenata

E. Geukens; K. Van Poucke; A. Haegeman; et al. Journal of Phytopathology 2025. doi:10.1111/jph.70173

Other claims from this paper (6)

Observationobservedoriginal resultmeasured

Claim · model-written summary

The qPCR assays were successfully used to quantify Berkeleyomyces in Ilex crenata.

Taxon: Ilex crenataIlex crenatat0
Outcome: quantify the pathogene0
Qualifier: successfully usede0

Verbatim

t0
“Ilex crenata”
✓ located verbatim in the source · abstract, characters 188–200

e0
“The qPCR assays were successfully used to quantify the pathogen”
✓ located verbatim in the source · abstract, characters 1541–1604

Title

Genetic Variation, qPCR ‐Based Detection and Virulence of Berkeleyomyces Species in Ilex crenata

E. Geukens; K. Van Poucke; A. Haegeman; et al. Journal of Phytopathology 2025. doi:10.1111/jph.70173

Other claims from this paper (6)

Observation Most Ilex crenata isolates of Berkeleyomyces basicola belonged to two near-clonal groups.
Intervention effect Berkeleyomyces rouxiae and B. basicola caused similar disease levels on Ilex crenata.
Association Virulence differences among Berkeleyomyces isolates on Ilex crenata were smaller and related to the host of origin.
Method / resource A qPCR assay on the 60S locus had a sensitivity down to 100 fg DNA.
Method / resource A qPCR assay on the rDNA ITS locus had a sensitivity down to 10 fg DNA and can be run in duplex format.
Recommendation The qPCR assays show potential for use in other hosts and in epidemiological studies.

Recommendationauthor interpretationoriginal resultbasis n/a

Claim · model-written summary

The qPCR assays show potential for use in other hosts and in epidemiological studies.

Taxon: Ilex crenataIlex crenatat0
Outcome: potential for use in other hosts as well as in epidemiological studiese0

Verbatim

t0
“Ilex crenata”
✓ located verbatim in the source · abstract, characters 188–200

e0
“They show potential for use in other hosts as well as in epidemiological studies”
✓ located verbatim in the source · abstract, characters 1606–1686

Title

Genetic Variation, qPCR ‐Based Detection and Virulence of Berkeleyomyces Species in Ilex crenata

E. Geukens; K. Van Poucke; A. Haegeman; et al. Journal of Phytopathology 2025. doi:10.1111/jph.70173

Other claims from this paper (6)

Observationobservedoriginal resultmeasured

Claim · model-written summary

Genome size across the Ilex collection ranges from 1.50 to 8.01 (pg/2C).

Taxon: Ilex crenataIlex crenatat0
Outcome: genome sizee0
Value: 1.50 ± 0.03 to 8.01 ± 0.18e0
Qualifier: entire collectione0

Verbatim

t0
“Ilex crenata”
✓ located verbatim in the source · title, characters 34–46

e0
“The genome size of the entire collection ranged from 1.50 ± 0.03 to 8.01 ± 0.18”
✓ located verbatim in the source · abstract, characters 319–398

Title

Exploring Genetic Diversity in an Ilex crenata Breeding Germplasm

Esther Geukens; Annelies Haegeman; Jef Van Meulder; et al. Horticulturae 2023. doi:10.3390/horticulturae9040485

Other claims from this paper (9)

Observationobservedoriginal resultmeasured

Claim · model-written summary

Diploid I. crenata genome sizes range from 1.98 to 2.30.

Taxon: I. crenataIlex crenatae1
Outcome: genome sizese1
Value: 1.98 ± 0.08 and 2.30 ± 0.04e1

Verbatim

e1
“Within the species of I. crenata, genome sizes varied (mean ± sd) between 1.98 ± 0.08 and 2.30 ± 0.04”
✓ located verbatim in the source · abstract, characters 400–501

Title

Exploring Genetic Diversity in an Ilex crenata Breeding Germplasm

Esther Geukens; Annelies Haegeman; Jef Van Meulder; et al. Horticulturae 2023. doi:10.3390/horticulturae9040485

Other claims from this paper (9)

Observationobservedoriginal resultmeasured

Claim · model-written summary

Three outlier I. crenata accessions have genome sizes of 3.06, 4.04 and 4.19.

Taxon: I. crenataIlex crenatae1
Outcome: outlierse2
Value: 3.06 ± 0.04, 4.04 ± 0.09, and 4.19 ± 0.08e2
Qualifier: three outlierse2

Verbatim

e1
“Within the species of I. crenata, genome sizes varied (mean ± sd) between 1.98 ± 0.08 and 2.30 ± 0.04”
✓ located verbatim in the source · abstract, characters 400–501

e2
“with three outliers: 3.06 ± 0.04, 4.04 ± 0.09, and 4.19 ± 0.08”
✓ located verbatim in the source · abstract, characters 503–565

Title

Exploring Genetic Diversity in an Ilex crenata Breeding Germplasm

Esther Geukens; Annelies Haegeman; Jef Van Meulder; et al. Horticulturae 2023. doi:10.3390/horticulturae9040485

Other claims from this paper (9)

Ilex crenata 443 claims

443 claims