By organism › Fungi › Melampsoraceae › Melampsora lini

Observationobservedoriginal resultmeasured

Claim · model-written summary

AvrM14 selectively removed protective 5′ caps from mRNA in vitro.

Taxon: Melampsora liniMelampsora linit0
Gene: AvrM14e0
Outcome: removing the protective 5' cap from mRNA transcriptse0
Setting: in vitroe0

Verbatim

e0
“AvrM14 is an extremely selective enzyme capable of removing the protective 5' cap from mRNA transcripts in vitro”
✓ located verbatim in the source · abstract, characters 584–696

t0
“flax rust fungus (Melampsora lini)”
✓ located verbatim in the source · abstract, characters 198–232

Title

A rust‐fungus Nudix hydrolase effector decaps mRNAin vitro and interferes with plant immune pathways

Carl L. McCombe; Ann‐Maree Catanzariti; Julian R. Greenwood; et al. New Phytologist 2023. doi:10.1111/nph.18727

Other claims from this paper (6)

Mechanismobservedoriginal resultmeasured

Claim · model-written summary

AvrM14 homodimerization promoted biologically relevant mRNA cap cleavage in vitro.

Taxon: Melampsora liniMelampsora linit0
Gene: AvrM14e0
Outcome: mRNA cap cleavagee0
Qualifier: Homodimerisatione0
Setting: in vitroe0

Verbatim

e0
“Homodimerisation of AvrM14 promoted biologically relevant mRNA cap cleavage in vitro”
✓ located verbatim in the source · abstract, characters 698–782

t0
“flax rust fungus (Melampsora lini)”
✓ located verbatim in the source · abstract, characters 198–232

Title

A rust‐fungus Nudix hydrolase effector decaps mRNAin vitro and interferes with plant immune pathways

Carl L. McCombe; Ann‐Maree Catanzariti; Julian R. Greenwood; et al. New Phytologist 2023. doi:10.1111/nph.18727

Other claims from this paper (6)

Observationobservedoriginal resultmeasured

Claim · model-written summary

AvrP has an elongated zinc finger like structure with a novel interleaved zinc binding topology.

Taxon: Melampsora liniMelampsora linit0
Gene: AvrPt0
Outcome: elongated zinc-finger-like structure with a novel interleaved zinc-binding topologye0

Verbatim

e0
“The structure reveals an elongated zinc-finger-like structure with a novel interleaved zinc-binding topology.”
✓ located verbatim in the source · abstract, characters 394–503

t0
“Melampsora lini effector AvrP”
✓ located verbatim in the source · title, characters 25–54

t1
“Melampsora lini effector AvrP”
✓ located verbatim in the source · title, characters 25–54

Title

Crystal structure of the Melampsora lini effector AvrP reveals insights into a possible nuclear function and recognition by the flax disease resistance protein P

Xiaoxiao Zhang; Nadya Farah; Laura Rolston; et al. Molecular Plant Pathology 2017. doi:10.1111/mpp.12597

Other claims from this paper (6)

Observationobservedoriginal resultmeasured

Claim · model-written summary

Zinc binding residues are conserved across AvrP variants.

Taxon: Melampsora liniMelampsora linit0
Gene: AvrPe0
Outcome: residues responsible for zinc binding are conservede0

Verbatim

e0
“The residues responsible for zinc binding are conserved in AvrP effector variants”
✓ located verbatim in the source · abstract, characters 504–585

t0
“Melampsora lini effector AvrP”
✓ located verbatim in the source · title, characters 25–54

t1
“Melampsora lini effector AvrP”
✓ located verbatim in the source · title, characters 25–54

Title

Crystal structure of the Melampsora lini effector AvrP reveals insights into a possible nuclear function and recognition by the flax disease resistance protein P

Xiaoxiao Zhang; Nadya Farah; Laura Rolston; et al. Molecular Plant Pathology 2017. doi:10.1111/mpp.12597

Other claims from this paper (6)

Observationobservedoriginal resultmeasured

Claim · model-written summary

The first zinc coordinating region has a positively charged surface and limited similarity to nucleic acid binding and chromatin associated proteins.

Taxon: Melampsora liniMelampsora linit0
Gene: AvrPt0
Outcome: positively charged surface and shows some limited similarities to nucleic acid-binding and chromatin-associated proteinse0

Verbatim

e0
“The first zinc-coordinating region of the structure displays a positively charged surface and shows some limited similarities to nucleic acid-binding and chromatin-associated proteins.”
✓ located verbatim in the source · abstract, characters 660–844

t0
“Melampsora lini effector AvrP”
✓ located verbatim in the source · title, characters 25–54

t1
“Melampsora lini effector AvrP”
✓ located verbatim in the source · title, characters 25–54

Title

Crystal structure of the Melampsora lini effector AvrP reveals insights into a possible nuclear function and recognition by the flax disease resistance protein P

Xiaoxiao Zhang; Nadya Farah; Laura Rolston; et al. Molecular Plant Pathology 2017. doi:10.1111/mpp.12597

Other claims from this paper (6)

Observation AvrP has an elongated zinc finger like structure with a novel interleaved zinc binding topology.
Observation Zinc binding residues are conserved across AvrP variants.
Intervention effect Mutation of zinc binding motifs abolished P mediated recognition.
Observation Most transiently expressed AvrP accumulated in the Nicotiana benthamiana nucleus.
Observation Polymorphic AvrP variant residues map to the protein surface and may relate to recognition specificity.
Intervention effect Several mutations on the nonconserved AvrP surface patch caused loss of P recognition.

Observationobservedoriginal resultmeasured

Claim · model-written summary

Polymorphic AvrP variant residues map to the protein surface and may relate to recognition specificity.

Taxon: Melampsora liniMelampsora linit0
Gene: AvrPe0
Outcome: map to the protein surfacee0
Qualifier: could be associated with differences in recognition specificitye0

Verbatim

e0
“Polymorphic residues in AvrP and its allelic variants map to the protein surface and could be associated with differences in recognition specificity.”
✓ located verbatim in the source · abstract, characters 1025–1174

t0
“Melampsora lini effector AvrP”
✓ located verbatim in the source · title, characters 25–54

t1
“Melampsora lini effector AvrP”
✓ located verbatim in the source · title, characters 25–54

Title

Crystal structure of the Melampsora lini effector AvrP reveals insights into a possible nuclear function and recognition by the flax disease resistance protein P

Xiaoxiao Zhang; Nadya Farah; Laura Rolston; et al. Molecular Plant Pathology 2017. doi:10.1111/mpp.12597

Other claims from this paper (6)

Observationobservedoriginal resultmeasured

Claim · model-written summary

The flax rust AvrM protein is secreted from haustoria during infection and accumulates in the haustorial wall.

Taxon: flax rustMelampsora linie1
Gene: AvrMe1
Outcome: secreted from haustoria during infection and accumulates in the haustorial walle1

Verbatim

e1
“the flax rust AvrM protein is secreted from haustoria during infection and accumulates in the haustorial wall”
✓ located verbatim in the source · abstract, characters 428–537

Title

Internalization of Flax Rust Avirulence Proteins into Flax and Tobacco Cells Can Occur in the Absence of the Pathogen

Maryam Rafiqi; Pamela H.P. Gan; Michael Ravensdale; et al. The Plant Cell 2010. doi:10.1105/tpc.109.072983

Other claims from this paper (7)

Observationobservedoriginal resultmeasured

Claim · model-written summary

AvrL567 variants that escape recognition maintain a conserved structure and stability.

Taxon: flax rustMelampsora linit0
Gene: AvrL567e1
Outcome: conserved structure and stabilitye1

Verbatim

e1
“Biochemical analysis of Escherichia coli-produced AvrL567 proteins shows that variants that escape recognition nevertheless maintain a conserved structure and stability”
✓ located verbatim in the source · abstract, characters 1246–1414

t0
“flax rust avirulence genes”
✓ located verbatim in the source · title, characters 112–138

Title

Direct protein interaction underlies gene-for-gene specificity and coevolution of the flax resistance genes and flax rust avirulence genes

Peter N. Dodds; Gregory J. Lawrence; Ann-Maree Catanzariti; et al. Proceedings of the National Academy of Sciences 2006. doi:10.1073/pnas.0602577103

Other claims from this paper (6)

Observationobservedoriginal resultpositivemeasured

Claim · model-written summary

Seedling resistance of N.P. (R.R.) 9 and N.P. (R.R.) 498 to race I1 is controlled by a single pair of dominant genes.

Taxon: Melampsora liniMelampsora linie0
Material: N.P. (R.R.) 9 and N.P. (R.R.) 498e0
Outcome: seedling resistancee0
Qualifier: controlled by a single pair of dominant genese0

Verbatim

e0
“The seedling resistance of N.P. (R.R.) 9 and N.P. (R.R.) 498 to race I1 of Melampsora lini show similar genetic control, being controlled by a single pair of dominant genes”
✓ located verbatim in the source · abstract, characters 0–172

Title

Inheritance of Seedling Resistance to Race I, of Melampsora Lini

L. M. Jeswani; R. Prasada; A. B. Joshi Indian Journal of Genetics and Plant Breeding (The) 1964

Other claims from this paper (1)

Observation Seedling resistance of N.P. (R.R.) 45 to race I1 is governed by two pairs of complementary genes contributed by the resistant parent.

Observationobservedoriginal resultpositivemeasured

Claim · model-written summary

Seedling resistance of N.P. (R.R.) 45 to race I1 is governed by two pairs of complementary genes contributed by the resistant parent.

Taxon: Melampsora liniMelampsora linie0
Material: N.P. (R.R.) 45e1
Outcome: Resistancee1
Qualifier: governed by two pairs of complementary genese1

Verbatim

e0
“The seedling resistance of N.P. (R.R.) 9 and N.P. (R.R.) 498 to race I1 of Melampsora lini show similar genetic control, being controlled by a single pair of dominant genes”
✓ located verbatim in the source · abstract, characters 0–172

e1
“Resistance of N.P. (R.R.) 45 to race I1 in crosses with E.B. 3 and N.P. 12 was found to be governed by two pairs of complementary genes contributed by the resistant parent”
✓ located verbatim in the source · abstract, characters 174–345

Title

Inheritance of Seedling Resistance to Race I, of Melampsora Lini

L. M. Jeswani; R. Prasada; A. B. Joshi Indian Journal of Genetics and Plant Breeding (The) 1964

Other claims from this paper (1)

Observation Seedling resistance of N.P. (R.R.) 9 and N.P. (R.R.) 498 to race I1 is controlled by a single pair of dominant genes.

Melampsora lini 10 claims

10 claims