Paper · 1998 · Biochemical Journal

Protein heterogeneity of spinach pullulanase results from the coexistence of interconvertible isomeric forms of the monomeric enzyme

Anette HENKER; Ilka SCHINDLER; Andreas RENZ; et al.

14
claims
27
verbatim quotes
15
citations
2
research areas
✓
Open access

Abstract

Purified pullulanase (starch-debranching enzyme, R-enzyme, EC 3.2.1. 41) from spinach (Spinacia oleracea L.) chloroplasts separated into at least seven individual enzymically active proteins (isomers, numbered 1-7) on isoelectric focusing or column chromatofocusing. At their isoelectric points (between pH 4.7 and 5.2) these forms were rather stable. At slightly alkaline pH, each converted into the whole set of isomers. PAGE of the purified enzyme under denaturing or non-denaturing conditions resulted in one protein band. When substrate (amylopectin or pullulan) was included in the gel, the native enzyme as well as any of the individual isomers separated into two (sometimes three) bands ('substrate-induced forms', numbered I-III) with different specific activities, dissociation constants of the enzyme-substrate complexes and activation energies. Each substrate-induced form produced the whole set of seven isomers on isoelectric focusing. The specific activity of the total enzyme reflected the relative proportions of the substrate-induced forms. To some extent the relative proportions, as determined by crossed immunoelectrophoresis, could be shifted in favour of the more or the less active forms by reduction with dithiothreitol, and gentle oxidation respectively. Activation by dithiothreitol did not alter the mode of action of the enzyme but only increased the velocity of substrate degradation and extended its activity into the pH range of the chloroplast. As a consequence of isomer interconversion, microheterogeneity could serve to regulate pullulanase activity in a biochemical manner that shares some features with allosteric regulation.

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Claims 14

Observationobservedoriginal resultmeasured

Claim · model-written summary

Spinach chloroplast pullulanase separated into at least seven enzymically active isomers.

Taxon
Spinacia oleraceaSpinacia oleraceae1
Organ / stage
chloroplastse1
Gene
pullulanasee1
Outcome
individual enzymically active proteinse1
Value
at least sevene1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Spinacia oleracea
Spinacia oleracea · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e1

“Purified pullulanase (starch-debranching enzyme, R-enzyme, EC 3.2.1. 41) from spinach (Spinacia oleracea L.) chloroplasts separated into at least seven individual enzymically active proteins (isomers, numbered 1-7) on isoelectric focusing or column chromatofocusing”

✓ located verbatim in the source · abstract, characters 0–265 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

The pullulanase isomers were rather stable at their isoelectric points (pH 4.7 to 5.2).

Taxon
Spinacia oleraceaSpinacia oleraceae1
Outcome
these forms were rather stablee2
Qualifier
At their isoelectric points (between pH 4.7 and 5.2)e2

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Spinacia oleracea
Spinacia oleracea · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e1

“Purified pullulanase (starch-debranching enzyme, R-enzyme, EC 3.2.1. 41) from spinach (Spinacia oleracea L.) chloroplasts separated into at least seven individual enzymically active proteins (isomers, numbered 1-7) on isoelectric focusing or column chromatofocusing”

✓ located verbatim in the source · abstract, characters 0–265 · show in text ↑
e2

“At their isoelectric points (between pH 4.7 and 5.2) these forms were rather stable”

✓ located verbatim in the source · abstract, characters 267–350 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

At slightly alkaline pH each pullulanase isomer converted into the whole set of isomers.

Taxon
Spinacia oleraceaSpinacia oleraceae1
Outcome
each converted into the whole set of isomerse3
Qualifier
At slightly alkaline pHe3

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Spinacia oleracea
Spinacia oleracea · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e1

“Purified pullulanase (starch-debranching enzyme, R-enzyme, EC 3.2.1. 41) from spinach (Spinacia oleracea L.) chloroplasts separated into at least seven individual enzymically active proteins (isomers, numbered 1-7) on isoelectric focusing or column chromatofocusing”

✓ located verbatim in the source · abstract, characters 0–265 · show in text ↑
e3

“At slightly alkaline pH, each converted into the whole set of isomers”

✓ located verbatim in the source · abstract, characters 352–421 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Purified spinach pullulanase gave one protein band on PAGE under denaturing or non-denaturing conditions.

Taxon
Spinacia oleraceaSpinacia oleraceae1
Outcome
protein bande4
Value
onee4
Qualifier
under denaturing or non-denaturing conditionse4

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Spinacia oleracea
Spinacia oleracea · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e1

“Purified pullulanase (starch-debranching enzyme, R-enzyme, EC 3.2.1. 41) from spinach (Spinacia oleracea L.) chloroplasts separated into at least seven individual enzymically active proteins (isomers, numbered 1-7) on isoelectric focusing or column chromatofocusing”

✓ located verbatim in the source · abstract, characters 0–265 · show in text ↑
e4

“PAGE of the purified enzyme under denaturing or non-denaturing conditions resulted in one protein band”

✓ located verbatim in the source · abstract, characters 423–525 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Substrate in the gel split the native enzyme and its isomers into two (sometimes three) bands.

Taxon
Spinacia oleraceaSpinacia oleraceae1
Treatment
substrate (amylopectin or pullulan)e5
Outcome
bandse5
Value
two (sometimes three)e5

Not reportedComparatorDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Spinacia oleracea
Spinacia oleracea · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e1

“Purified pullulanase (starch-debranching enzyme, R-enzyme, EC 3.2.1. 41) from spinach (Spinacia oleracea L.) chloroplasts separated into at least seven individual enzymically active proteins (isomers, numbered 1-7) on isoelectric focusing or column chromatofocusing”

✓ located verbatim in the source · abstract, characters 0–265 · show in text ↑
e5

“When substrate (amylopectin or pullulan) was included in the gel, the native enzyme as well as any of the individual isomers separated into two (sometimes three) bands”

✓ located verbatim in the source · abstract, characters 527–694 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Substrate-induced forms of spinach pullulanase differed in specific activities, dissociation constants and activation energies.

Taxon
Spinacia oleraceaSpinacia oleraceae1
Outcome
specific activitiese6
Qualifier
dissociation constants of the enzyme-substrate complexes and activation energiese6

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Spinacia oleracea
Spinacia oleracea · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e1

“Purified pullulanase (starch-debranching enzyme, R-enzyme, EC 3.2.1. 41) from spinach (Spinacia oleracea L.) chloroplasts separated into at least seven individual enzymically active proteins (isomers, numbered 1-7) on isoelectric focusing or column chromatofocusing”

✓ located verbatim in the source · abstract, characters 0–265 · show in text ↑
e6

“with different specific activities, dissociation constants of the enzyme-substrate complexes and activation energies”

✓ located verbatim in the source · abstract, characters 739–855 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Each substrate-induced form produced the whole set of seven isomers on isoelectric focusing.

Taxon
Spinacia oleraceaSpinacia oleraceae1
Outcome
whole set of seven isomerse7
Qualifier
on isoelectric focusinge7

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Spinacia oleracea
Spinacia oleracea · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e1

“Purified pullulanase (starch-debranching enzyme, R-enzyme, EC 3.2.1. 41) from spinach (Spinacia oleracea L.) chloroplasts separated into at least seven individual enzymically active proteins (isomers, numbered 1-7) on isoelectric focusing or column chromatofocusing”

✓ located verbatim in the source · abstract, characters 0–265 · show in text ↑
e7

“Each substrate-induced form produced the whole set of seven isomers on isoelectric focusing”

✓ located verbatim in the source · abstract, characters 857–948 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

The specific activity of the total spinach pullulanase reflected the relative proportions of the substrate-induced forms.

Taxon
Spinacia oleraceaSpinacia oleraceae1
Outcome
specific activity of the total enzymee2
Qualifier
reflected the relative proportions of the substrate-induced formse2

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Spinacia oleracea
Spinacia oleracea · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e1

“Purified pullulanase (starch-debranching enzyme, R-enzyme, EC 3.2.1. 41) from spinach (Spinacia oleracea L.) chloroplasts separated into at least seven individual enzymically active proteins (isomers, numbered 1-7) on isoelectric focusing or column chromatofocusing”

✓ located verbatim in the source · abstract, characters 0–265 · show in text ↑
e2

“The specific activity of the total enzyme reflected the relative proportions of the substrate-induced forms”

✓ located verbatim in the source · abstract, characters 950–1057 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Reduction with dithiothreitol shifted the relative proportions of pullulanase forms toward the more active forms.

Taxon
Spinacia oleraceaSpinacia oleraceae1
Treatment
reduction with dithiothreitole2
Outcome
relative proportionse2
Direction
shiftede2
Qualifier
To some extente2

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Spinacia oleracea
Spinacia oleracea · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e1

“Purified pullulanase (starch-debranching enzyme, R-enzyme, EC 3.2.1. 41) from spinach (Spinacia oleracea L.) chloroplasts separated into at least seven individual enzymically active proteins (isomers, numbered 1-7) on isoelectric focusing or column chromatofocusing”

✓ located verbatim in the source · abstract, characters 0–265 · show in text ↑
e2

“To some extent the relative proportions, as determined by crossed immunoelectrophoresis, could be shifted in favour of the more or the less active forms by reduction with dithiothreitol, and gentle oxidation respectively”

✓ located verbatim in the source · abstract, characters 1059–1279 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Gentle oxidation shifted the relative proportions of pullulanase forms toward the less active forms.

Taxon
Spinacia oleraceaSpinacia oleraceae1
Treatment
gentle oxidatione2
Outcome
relative proportionse2
Direction
shiftede2
Qualifier
To some extente2

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Spinacia oleracea
Spinacia oleracea · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e1

“Purified pullulanase (starch-debranching enzyme, R-enzyme, EC 3.2.1. 41) from spinach (Spinacia oleracea L.) chloroplasts separated into at least seven individual enzymically active proteins (isomers, numbered 1-7) on isoelectric focusing or column chromatofocusing”

✓ located verbatim in the source · abstract, characters 0–265 · show in text ↑
e2

“To some extent the relative proportions, as determined by crossed immunoelectrophoresis, could be shifted in favour of the more or the less active forms by reduction with dithiothreitol, and gentle oxidation respectively”

✓ located verbatim in the source · abstract, characters 1059–1279 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Activation by dithiothreitol increased the velocity of spinach pullulanase substrate degradation.

Taxon
Spinacia oleraceaSpinacia oleraceae1
Treatment
Activation by dithiothreitole2
Outcome
velocity of substrate degradatione2
Direction
increasede2

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Spinacia oleracea
Spinacia oleracea · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e1

“Purified pullulanase (starch-debranching enzyme, R-enzyme, EC 3.2.1. 41) from spinach (Spinacia oleracea L.) chloroplasts separated into at least seven individual enzymically active proteins (isomers, numbered 1-7) on isoelectric focusing or column chromatofocusing”

✓ located verbatim in the source · abstract, characters 0–265 · show in text ↑
e2

“Activation by dithiothreitol did not alter the mode of action of the enzyme but only increased the velocity of substrate degradation and extended its activity into the pH range of the chloroplast”

✓ located verbatim in the source · abstract, characters 1281–1476 · show in text ↑
Intervention effectobservedoriginal resultno effectmeasured

Claim · model-written summary

Activation by dithiothreitol did not alter the mode of action of spinach pullulanase.

Taxon
Spinacia oleraceaSpinacia oleraceae1
Treatment
Activation by dithiothreitole2
Outcome
mode of action of the enzymee2
Direction
did not altere2

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Spinacia oleracea
Spinacia oleracea · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e1

“Purified pullulanase (starch-debranching enzyme, R-enzyme, EC 3.2.1. 41) from spinach (Spinacia oleracea L.) chloroplasts separated into at least seven individual enzymically active proteins (isomers, numbered 1-7) on isoelectric focusing or column chromatofocusing”

✓ located verbatim in the source · abstract, characters 0–265 · show in text ↑
e2

“Activation by dithiothreitol did not alter the mode of action of the enzyme but only increased the velocity of substrate degradation and extended its activity into the pH range of the chloroplast”

✓ located verbatim in the source · abstract, characters 1281–1476 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Activation by dithiothreitol extended the activity of spinach pullulanase into the pH range of the chloroplast.

Taxon
Spinacia oleraceaSpinacia oleraceae1
Treatment
Activation by dithiothreitole2
Outcome
pH rangee2
Direction
extendede2

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Spinacia oleracea
Spinacia oleracea · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e1

“Purified pullulanase (starch-debranching enzyme, R-enzyme, EC 3.2.1. 41) from spinach (Spinacia oleracea L.) chloroplasts separated into at least seven individual enzymically active proteins (isomers, numbered 1-7) on isoelectric focusing or column chromatofocusing”

✓ located verbatim in the source · abstract, characters 0–265 · show in text ↑
e2

“Activation by dithiothreitol did not alter the mode of action of the enzyme but only increased the velocity of substrate degradation and extended its activity into the pH range of the chloroplast”

✓ located verbatim in the source · abstract, characters 1281–1476 · show in text ↑
Mechanismhypothesisoriginal resultbasis n/a

Claim · model-written summary

Isomer interconversion may let microheterogeneity regulate spinach pullulanase activity in a biochemical manner.

Taxon
Spinacia oleraceaSpinacia oleraceae1
Gene
pullulanasee2
Outcome
pullulanase activitye2
Qualifier
isomer interconversione2

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Spinacia oleracea
Spinacia oleracea · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e1

“Purified pullulanase (starch-debranching enzyme, R-enzyme, EC 3.2.1. 41) from spinach (Spinacia oleracea L.) chloroplasts separated into at least seven individual enzymically active proteins (isomers, numbered 1-7) on isoelectric focusing or column chromatofocusing”

✓ located verbatim in the source · abstract, characters 0–265 · show in text ↑
e2

“As a consequence of isomer interconversion, microheterogeneity could serve to regulate pullulanase activity in a biochemical manner”

✓ located verbatim in the source · abstract, characters 1478–1609 · show in text ↑

1,4-dithiothreitol · physiology: enzyme activity · Spinacia oleracea (spinach)Results agree

4 papers: 0 positive, 4 negative or no effect

3 papers in the same direction as this paper

  1. no effect
  2. no effect
  3. no effect
See all 4 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.