Paper · 2011 · Functional Plant Biology

Revisiting the role of organic acids in the bicarbonate tolerance of zinc-efficient rice genotypes

Michael T. Rose; Terry J. Rose; Juan Pariasca-Tanaka; et al.

12
claims
27
verbatim quotes
44
citations
1
research areas
—
Not open access

Abstract

It has been hypothesised that enhanced organic acid release from the roots of zinc-efficient rice (Oryza sativa L.) genotypes plays a strong role in plant tolerance to both bicarbonate excess and Zn deficiency. To address several uncertainties in the literature surrounding the tolerance of rice to bicarbonate, we initially assessed the tolerance of six rice genotypes to bicarbonate stress under field conditions and in solution culture. The landrace Jalmagna and its recombinant inbred offspring, RIL46, consistently performed better in terms of maintenance of biomass and root length under high bicarbonate concentrations. In the hydroponic experiments, increased root malate (but not citrate) accumulation and efflux were responses to high solution bicarbonate in the short-term (12h) in all genotypes. Although both citrate and malate accumulation and efflux increased after long-term exposure (10 days) to high bicarbonate and Zn deficiency, it coincided with amino acid leakage from the roots. Partial least-squares regression showed that this leakage consistently ranked highly as an indicator of poor plant health under all stress conditions, whereas specific malate efflux (the ratio of malate to amino acid efflux) was an important predictor of good plant health. The root leakage of Zn-inefficient genotypes under bicarbonate and dual stress (bicarbonate with low Zn) was typically higher than in Zn-efficient genotypes, and coincided with higher peroxide concentrations, suggesting that bicarbonate tolerance is related to the ability of Zn-efficient genotypes to overcome oxidative stress, maintain root membrane integrity and minimise root leakage.

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The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 12

Observationobservedoriginal resultpositivemeasured

Claim · model-written summary

Jalmagna maintained biomass and root length better under high bicarbonate.

Material
Jalmagnae0
Treatment
high bicarbonate concentrationse0
Outcome
maintenance of biomass and root lengthe0
Direction
bettere0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“The landrace Jalmagna and its recombinant inbred offspring, RIL46, consistently performed better in terms of maintenance of biomass and root length under high bicarbonate concentrations”

✓ located verbatim in the source · abstract, characters 440–625 · show in text ↑
t0

“rice”

✓ located verbatim in the source · title, characters 84–88 · show in text ↑
Observationobservedoriginal resultpositivemeasured

Claim · model-written summary

RIL46 maintained biomass and root length better under high bicarbonate.

Material
RIL46e0
Treatment
high bicarbonate concentrationse0
Outcome
maintenance of biomass and root lengthe0
Direction
bettere0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“The landrace Jalmagna and its recombinant inbred offspring, RIL46, consistently performed better in terms of maintenance of biomass and root length under high bicarbonate concentrations”

✓ located verbatim in the source · abstract, characters 440–625 · show in text ↑
t0

“rice”

✓ located verbatim in the source · title, characters 84–88 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

All genotypes increased root malate accumulation and efflux after short term high bicarbonate.

Treatment
high solution bicarbonatee0
Outcome
root malate (but not citrate) accumulation and effluxe0
Direction
increasede0
Qualifier
short-term (12h)e0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“increased root malate (but not citrate) accumulation and efflux were responses to high solution bicarbonate in the short-term (12h) in all genotypes”

✓ located verbatim in the source · abstract, characters 658–806 · show in text ↑
t0

“rice”

✓ located verbatim in the source · title, characters 84–88 · show in text ↑
Intervention effectobservedoriginal resultno effectmeasured

Claim · model-written summary

Citrate accumulation and efflux did not increase after short term high bicarbonate.

Treatment
high solution bicarbonatee0
Outcome
citrate) accumulation and effluxe0
Qualifier
short-term (12h)e0

Not reportedComparatorDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“increased root malate (but not citrate) accumulation and efflux were responses to high solution bicarbonate in the short-term (12h) in all genotypes”

✓ located verbatim in the source · abstract, characters 658–806 · show in text ↑
t0

“rice”

✓ located verbatim in the source · title, characters 84–88 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Citrate accumulation and efflux rose after long term high bicarbonate and zinc deficiency.

Treatment
high bicarbonate and Zn deficiencye0
Outcome
citrate and malate accumulation and effluxe0
Direction
increasede0
Qualifier
10 dayse0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“both citrate and malate accumulation and efflux increased after long-term exposure (10 days) to high bicarbonate and Zn deficiency”

✓ located verbatim in the source · abstract, characters 817–947 · show in text ↑
t0

“rice”

✓ located verbatim in the source · title, characters 84–88 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Malate accumulation and efflux rose after long term high bicarbonate and zinc deficiency.

Treatment
high bicarbonate and Zn deficiencye0
Outcome
malate accumulation and effluxe0
Direction
increasede0
Qualifier
10 dayse0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“both citrate and malate accumulation and efflux increased after long-term exposure (10 days) to high bicarbonate and Zn deficiency”

✓ located verbatim in the source · abstract, characters 817–947 · show in text ↑
t0

“rice”

✓ located verbatim in the source · title, characters 84–88 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Long term stress coincided with amino acid leakage from roots.

Treatment
high bicarbonate and Zn deficiencye1
Outcome
amino acid leakage from the rootse0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“it coincided with amino acid leakage from the roots”

✓ located verbatim in the source · abstract, characters 949–1000 · show in text ↑
e1

“high bicarbonate and Zn deficiency”

✓ located verbatim in the source · abstract, characters 913–947 · show in text ↑
t0

“rice”

✓ located verbatim in the source · title, characters 84–88 · show in text ↑
Associationobservedoriginal resultnegativemeasured

Claim · model-written summary

Amino acid leakage ranked highly as an indicator of poor plant health across stress conditions.

Organ / stage
rootse1
Outcome
poor plant healthe0
Direction
highlye0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“this leakage consistently ranked highly as an indicator of poor plant health under all stress conditions”

✓ located verbatim in the source · abstract, characters 1047–1151 · show in text ↑
e1

“amino acid leakage from the roots”

✓ located verbatim in the source · abstract, characters 967–1000 · show in text ↑
t0

“rice”

✓ located verbatim in the source · title, characters 84–88 · show in text ↑
Associationobservedoriginal resultpositivemeasured

Claim · model-written summary

Specific malate efflux predicted good plant health.

Compound
malatee0
Outcome
good plant healthe0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“specific malate efflux (the ratio of malate to amino acid efflux) was an important predictor of good plant health”

✓ located verbatim in the source · abstract, characters 1161–1274 · show in text ↑
t0

“rice”

✓ located verbatim in the source · title, characters 84–88 · show in text ↑
Associationobservedoriginal resultnegativemeasured

Claim · model-written summary

Zinc inefficient genotypes had higher root leakage under bicarbonate and combined stress than zinc efficient genotypes.

Material
Zn-inefficient genotypese0
Treatment
bicarbonate and dual stress (bicarbonate with low Zn)e0
Outcome
root leakagee0
Direction
highere0
Comparator
Zn-efficient genotypese0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“The root leakage of Zn-inefficient genotypes under bicarbonate and dual stress (bicarbonate with low Zn) was typically higher than in Zn-efficient genotypes”

✓ located verbatim in the source · abstract, characters 1276–1432 · show in text ↑
t0

“rice”

✓ located verbatim in the source · title, characters 84–88 · show in text ↑
Associationobservedoriginal resultnegativemeasured

Claim · model-written summary

Higher root leakage coincided with higher peroxide concentrations.

Material
Zn-inefficient genotypese1
Outcome
peroxide concentrationse0
Direction
highere0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“coincided with higher peroxide concentrations”

✓ located verbatim in the source · abstract, characters 1438–1483 · show in text ↑
e1

“The root leakage of Zn-inefficient genotypes under bicarbonate and dual stress (bicarbonate with low Zn) was typically higher than in Zn-efficient genotypes”

✓ located verbatim in the source · abstract, characters 1276–1432 · show in text ↑
t0

“rice”

✓ located verbatim in the source · title, characters 84–88 · show in text ↑
Mechanismauthor interpretationoriginal resultpositivemeasured

Claim · model-written summary

The authors associate bicarbonate tolerance with overcoming oxidative stress and maintaining root membrane integrity.

Material
Zn-efficient genotypese0
Outcome
bicarbonate tolerancee0
Qualifier
overcome oxidative stress, maintain root membrane integrity and minimise root leakagee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“bicarbonate tolerance is related to the ability of Zn-efficient genotypes to overcome oxidative stress, maintain root membrane integrity and minimise root leakage”

✓ located verbatim in the source · abstract, characters 1501–1663 · show in text ↑
t0

“rice”

✓ located verbatim in the source · title, characters 84–88 · show in text ↑

hydrogencarbonate · molecular: metabolites · Oryza sativa (rice)Positive and negative results

4 papers: 2 positive, 2 negative or no effect

1 paper in the same direction as this paper · 1 in the opposite direction · 1 reporting no difference from an alternative

  1. negative
  2. no effect
  3. positive
See all 4 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.