Paper · 2009 · Genes & Genetic Systems

Phytochrome dependent quantitative control of Hd3a transcription is the basis of the night break effect in rice flowering

Ryo Ishikawa; Tomoko Shinomura; Makoto Takano; et al.

12
claims
24
verbatim quotes
63
citations
3
research areas
✓
Open access

Abstract

A short exposure to light during relative night (night break; NB) delays flowering in the short day plant rice. NB acts by downregulating Heading date 3a (Hd3a) expression. Because phytochrome B mutants do not respond to NB and their flowering time is not affected even under NB conditions, phyB is required for the suppression of Hd3a expression. The effect of NB is quantitatively controlled by light quality and by either light intensity or duration. However, the molecular mechanisms that regulate these interactions are poorly understood. Here, we examine the roles of phytochromes in the regulation of Hd3a transcription under NB conditions using monochromatic red, far-red and blue light. Red and blue light downregulated Hd3a expression, but far-red light NB did not. The effect of red light NB on Hd3a is dependent on photon fluence and is restored by subsequent far-red light irradiation. Our results suggest that quantitative effect of light on flowering in rice NB is mediated by the regulation of Hd3a transcription by phyB.

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Claims 12

Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

A night break delayed rice flowering.

Treatment
short exposure to light during relative nighte0
Outcome
floweringe0
Direction
delayse0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“A short exposure to light during relative night (night break; NB) delays flowering in the short day plant rice”

✓ located verbatim in the source · abstract, characters 0–110 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

A night break downregulated Hd3a expression in rice.

Treatment
NBe0
Gene
Heading date 3a (Hd3a)e0
Outcome
Heading date 3a (Hd3a) expressione0
Direction
downregulatinge0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“NB acts by downregulating Heading date 3a (Hd3a) expression”

✓ located verbatim in the source · abstract, characters 112–171 · show in text ↑
t0

“rice flowering”

✓ located verbatim in the source · title, characters 107–121 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Phytochrome B mutants did not respond to night break in rice.

Material
phytochrome B mutantse0
Gene
phytochrome Be0
Outcome
do not respond to NBe0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“phytochrome B mutants do not respond to NB”

✓ located verbatim in the source · abstract, characters 181–223 · show in text ↑
t0

“rice flowering”

✓ located verbatim in the source · title, characters 107–121 · show in text ↑
Intervention effectobservedoriginal resultno effectmeasured

Claim · model-written summary

Night break did not affect flowering time in rice phytochrome B mutants.

Material
phytochrome B mutantse1
Treatment
NB conditionse0
Outcome
flowering timee0
Direction
not affectede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“their flowering time is not affected even under NB conditions”

✓ located verbatim in the source · abstract, characters 228–289 · show in text ↑
e1

“phytochrome B mutants”

✓ located verbatim in the source · abstract, characters 181–202 · show in text ↑
t0

“rice flowering”

✓ located verbatim in the source · title, characters 107–121 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Night-break effects on rice were quantitatively controlled by light quality.

Treatment
light qualitye0
Outcome
effect of NBe0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“The effect of NB is quantitatively controlled by light quality”

✓ located verbatim in the source · abstract, characters 348–410 · show in text ↑
t0

“rice flowering”

✓ located verbatim in the source · title, characters 107–121 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Night-break effects on rice were quantitatively controlled by light intensity or duration.

Treatment
light intensity or duratione0
Outcome
effect of NBe0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“The effect of NB is quantitatively controlled by light quality and by either light intensity or duration”

✓ located verbatim in the source · abstract, characters 348–452 · show in text ↑
t0

“rice flowering”

✓ located verbatim in the source · title, characters 107–121 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Red light downregulated rice Hd3a expression.

Treatment
Rede0
Gene
Hd3ae0
Outcome
Hd3a expressione0
Direction
downregulatede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Red and blue light downregulated Hd3a expression”

✓ located verbatim in the source · abstract, characters 696–744 · show in text ↑
t0

“rice flowering”

✓ located verbatim in the source · title, characters 107–121 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Blue light downregulated rice Hd3a expression.

Treatment
blue lighte0
Gene
Hd3ae0
Outcome
Hd3a expressione0
Direction
downregulatede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Red and blue light downregulated Hd3a expression”

✓ located verbatim in the source · abstract, characters 696–744 · show in text ↑
t0

“rice flowering”

✓ located verbatim in the source · title, characters 107–121 · show in text ↑
Intervention effectobservedoriginal resultno effectmeasured

Claim · model-written summary

Far-red light night break did not downregulate rice Hd3a expression.

Treatment
far-red light NBe0
Gene
Hd3ae1
Outcome
Hd3a expressione1
Direction
did note0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“far-red light NB did not”

✓ located verbatim in the source · abstract, characters 750–774 · show in text ↑
e1

“Red and blue light downregulated Hd3a expression, but far-red light NB did not”

✓ located verbatim in the source · abstract, characters 696–774 · show in text ↑
t0

“rice flowering”

✓ located verbatim in the source · title, characters 107–121 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

The red-light night-break effect on rice Hd3a depended on photon fluence.

Treatment
photon fluencee0
Gene
Hd3ae0
Outcome
effect of red light NB on Hd3ae0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“The effect of red light NB on Hd3a is dependent on photon fluence”

✓ located verbatim in the source · abstract, characters 776–841 · show in text ↑
t0

“rice flowering”

✓ located verbatim in the source · title, characters 107–121 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Subsequent far-red irradiation restored the red-light night-break effect on rice Hd3a.

Treatment
subsequent far-red light irradiatione0
Gene
Hd3ae0
Outcome
effect of red light NB on Hd3ae0
Direction
restorede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“The effect of red light NB on Hd3a is dependent on photon fluence and is restored by subsequent far-red light irradiation”

✓ located verbatim in the source · abstract, characters 776–897 · show in text ↑
t0

“rice flowering”

✓ located verbatim in the source · title, characters 107–121 · show in text ↑
Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

The authors suggest phyB regulation of Hd3a transcription mediates the quantitative night-break effect on rice flowering.

Gene
Hd3ae0
Outcome
quantitative effect of light on floweringe0
Qualifier
regulation of Hd3a transcription by phyBe0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“quantitative effect of light on flowering in rice NB is mediated by the regulation of Hd3a transcription by phyB”

✓ located verbatim in the source · abstract, characters 924–1036 · show in text ↑

radiation · phenology · Oryza sativa (rice)Positive and negative results

7 papers: 3 positive, 4 negative or no effect

2 papers in the same direction as this paper · 3 in the opposite direction · 1 reporting no difference from an alternative

  1. negative
  2. negative
  3. no effect

3 papers more in this group

See all 7 papers →

light · phenology · Oryza sativa (rice)Positive and negative results

24 papers: 14 positive, 10 negative or no effect

13 papers in the same direction as this paper · 10 in the opposite direction

  1. negative
  2. positive
  3. negative

20 papers more in this group

See all 24 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.