Paper · 2014 · The Crop Journal

Phenotypic analysis and molecular characterization of an allelic mutant of the D61 gene in rice

Yanan Gao; Guangquan Wang; Shoujiang Yuan; et al.

10
claims
17
verbatim quotes
5
citations
3
research areas
✓
Open access · cc-by-nc-nd

Abstract

Brassinosteroids (BRs) are a class of plant-specific steroidal hormones that play important roles in multiple biological processes. In this paper, a classic rice mutant gsor300084, showing erect leaves and semi-dwarf stature, was characterized. Morphological analysis in darkness showed that the mesocotyl of the gsor300084 mutant did not elongate when grown in darkness. Coleoptile elongation and root growth were less affected by the exogenous application of brassinolide (BL), the most active form of BR, in gsor300084 than in the wild-type rice variety Matsumae. Lamina joint bending analysis also showed that gsor300084 was less sensitive to exogenous BL than Matsumae. These results suggested that the gsor300084 mutant is defective in BR sensitivity. Map-based cloning indicated that gsor300084 is a novel allelic mutant of the DWARF61 (D61) gene, which encodes the putative BR receptor OsBRI1. A single-base mutation appears in the LRR domain of OsBRI1, changing the 444th amino acid from tryptophan (W) to arginine (R). Subcellular localization analysis suggested that both the wild-type and mutant OsBRI1 protein are localized at the cytoplasmic membrane. Structure modeling revealed that the W444R substitution may affect the perception of BRs by the LRR domain.

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Claims 10

Observationobservedoriginal resultmeasured

Claim · model-written summary

The gsor300084 rice mutant had erect leaves and a semi-dwarf stature.

Material
gsor300084e0
Outcome
erect leaves and semi-dwarf staturee0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“a classic rice mutant gsor300084, showing erect leaves and semi-dwarf stature”

✓ located verbatim in the source · abstract, characters 147–224 · show in text ↑
Observationobservedoriginal resultnegativemeasured

Claim · model-written summary

The gsor300084 mesocotyl did not elongate in darkness.

Material
gsor300084e0
Organ / stage
mesocotyle0
Treatment
darknesse0
Outcome
mesocotyl of the gsor300084 mutant did not elongatee0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“the mesocotyl of the gsor300084 mutant did not elongate when grown in darkness”

✓ located verbatim in the source · abstract, characters 292–370 · show in text ↑
t0

“rice”

✓ located verbatim in the source · title, characters 91–95 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

With exogenous brassinolide, gsor300084 coleoptile elongation responded less than Matsumae.

Material
gsor300084e0
Treatment
exogenous application of brassinolide (BL)e0
Outcome
Coleoptile elongatione0
Direction
less affectede0
Comparator
Matsumaee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Coleoptile elongation and root growth were less affected by the exogenous application of brassinolide (BL), the most active form of BR, in gsor300084 than in the wild-type rice variety Matsumae.”

✓ located verbatim in the source · abstract, characters 372–566 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

With exogenous brassinolide, gsor300084 root growth responded less than Matsumae.

Material
gsor300084e0
Treatment
exogenous application of brassinolide (BL)e0
Outcome
root growthe0
Direction
less affectede0
Comparator
Matsumaee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Coleoptile elongation and root growth were less affected by the exogenous application of brassinolide (BL), the most active form of BR, in gsor300084 than in the wild-type rice variety Matsumae.”

✓ located verbatim in the source · abstract, characters 372–566 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

gsor300084 lamina joint bending was less sensitive to exogenous brassinolide than Matsumae.

Material
gsor300084e0
Treatment
exogenous BLe0
Outcome
Lamina joint bendinge0
Direction
less sensitivee0
Comparator
Matsumaee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Lamina joint bending analysis also showed that gsor300084 was less sensitive to exogenous BL than Matsumae.”

✓ located verbatim in the source · abstract, characters 567–674 · show in text ↑
t0

“rice”

✓ located verbatim in the source · title, characters 91–95 · show in text ↑
Observationauthor interpretationoriginal resultnegativemeasured

Claim · model-written summary

The authors inferred that gsor300084 has defective brassinosteroid sensitivity.

Material
gsor300084e0
Outcome
BR sensitivitye0
Direction
defectivee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“the gsor300084 mutant is defective in BR sensitivity”

✓ located verbatim in the source · abstract, characters 704–756 · show in text ↑
t0

“rice”

✓ located verbatim in the source · title, characters 91–95 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Map-based cloning identified gsor300084 as a novel D61 allelic mutant.

Material
gsor300084e0
Gene
DWARF61 (D61)e0
Outcome
novel allelic mutante0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“gsor300084 is a novel allelic mutant of the DWARF61 (D61) gene, which encodes the putative BR receptor OsBRI1.”

✓ located verbatim in the source · abstract, characters 791–901 · show in text ↑
t0

“rice”

✓ located verbatim in the source · title, characters 91–95 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

A single-base OsBRI1 LRR-domain mutation changed amino acid 444 from tryptophan to arginine.

Gene
OsBRI1e0
Outcome
changing the 444th amino acid from tryptophan (W) to arginine (R)e0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“A single-base mutation appears in the LRR domain of OsBRI1, changing the 444th amino acid from tryptophan (W) to arginine (R).”

✓ located verbatim in the source · abstract, characters 902–1028 · show in text ↑
t0

“rice”

✓ located verbatim in the source · title, characters 91–95 · show in text ↑
Observationauthor interpretationoriginal resultmeasured

Claim · model-written summary

Wild-type and mutant OsBRI1 localized at the cytoplasmic membrane.

Gene
OsBRI1e0
Outcome
localized at the cytoplasmic membranee0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“both the wild-type and mutant OsBRI1 protein are localized at the cytoplasmic membrane”

✓ located verbatim in the source · abstract, characters 1078–1164 · show in text ↑
t0

“rice”

✓ located verbatim in the source · title, characters 91–95 · show in text ↑
Mechanismhypothesisoriginal resultsimulated

Claim · model-written summary

Structure modeling suggested that W444R may affect brassinosteroid perception by the LRR domain.

Gene
W444Re0
Outcome
perception of BRse0
Qualifier
by the LRR domaine0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“the W444R substitution may affect the perception of BRs by the LRR domain”

✓ located verbatim in the source · abstract, characters 1199–1272 · show in text ↑
t0

“rice”

✓ located verbatim in the source · title, characters 91–95 · show in text ↑

brassinolide · growth · Oryza sativa (rice)Results differ

32 papers: 27 positive, 5 negative or no effect

4 papers in the same direction as this paper · 27 in the opposite direction

  1. positive
  2. positive
  3. positive

28 papers more in this group

See all 32 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.