Paper · 2015 · BMC Genomics

Glutamine rapidly induces the expression of key transcription factor genes involved in nitrogen and stress responses in rice roots

Chia-Cheng Kan; Tsui-Yun Chung; Yan-An Juo; et al.

9
claims
13
verbatim quotes
152
citations
2
research areas
✓
Open access · cc-by

Abstract

BACKGROUND: Glutamine is a major amino donor for the synthesis of amino acids, nucleotides, and other nitrogen-containing compounds in all organisms. In addition to its role in nutrition and metabolism, glutamine can also function as a signaling molecule in bacteria, yeast, and humans. By contrast, the functions of glutamine in nutrition and as a signaling molecule remain unclear in plants. RESULTS: We demonstrated that glutamine could effectively support the growth of rice seedlings. In glutamine-treated rice roots, the glutamine contents increased dramatically, whereas levels of glutamate remained relatively constant. Transcriptome analysis of rice roots revealed that glutamine induced the expression of at least 35 genes involved in metabolism, transport, signal transduction, and stress responses within 30 min. Interestingly, 10 of the 35 early glutamine responsive genes encode putative transcription factors, including two LBD37-like genes that are involved in the regulation of nitrogen metabolism. Glutamine also rapidly induced the expression of the DREB1A, IRO2, and NAC5 transcription factor genes, which are involved in the regulation of stress responses. CONCLUSIONS: In addition to its role as a metabolic fuel, glutamine may also function as a signaling molecule to regulate gene expression in plants. The rapid induction of transcription factor genes suggests that glutamine may efficiently amplify its signal and interact with the other signal transduction pathways to regulate plant growth and stress responses. Thus, glutamine is a functional amino acid that plays important roles in plant nutrition and signal transduction.

Abstract from the paper’s OpenAlex record; open copy licensed cc-by. Read at the source ↗

The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 9

Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Glutamine effectively supported rice seedling growth.

Organ / stage
seedlingse0
Treatment
glutaminee0
Outcome
growthe0
Direction
supporte0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“glutamine could effectively support the growth of rice seedlings”

✓ located verbatim in the source · abstract, characters 424–488 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Glutamine content increased dramatically in treated rice roots.

Organ / stage
rootse0
Treatment
glutamine-treatede0
Outcome
glutamine contentse0
Direction
increasede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“In glutamine-treated rice roots, the glutamine contents increased dramatically”

✓ located verbatim in the source · abstract, characters 490–568 · show in text ↑
Intervention effectobservedoriginal resultno effectmeasured

Claim · model-written summary

Glutamate levels remained relatively constant in glutamine-treated rice roots.

Organ / stage
rootse0
Treatment
glutamine-treatede0
Outcome
levels of glutamatee0
Direction
remained relatively constante0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“In glutamine-treated rice roots, the glutamine contents increased dramatically, whereas levels of glutamate remained relatively constant”

✓ located verbatim in the source · abstract, characters 490–626 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Glutamine induced expression of at least 35 rice root genes involved in metabolism, transport, signal transduction and stress responses within 30 min.

Organ / stage
rootse0
Treatment
glutaminee0
Outcome
expression of at least 35 genese0
Direction
inducede0
Value
at least 35 genese0
Qualifier
within 30 mine0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Transcriptome analysis of rice roots revealed that glutamine induced the expression of at least 35 genes involved in metabolism, transport, signal transduction, and stress responses within 30 min”

✓ located verbatim in the source · abstract, characters 628–823 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Ten of the 35 early responsive genes encode putative transcription factors, including two LBD37-like genes.

Gene
LBD37-like genese0
Outcome
encode putative transcription factorse0
Value
10 of the 35e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“rice roots”

✓ located verbatim in the source · title, characters 120–130 · show in text ↑
e0

“10 of the 35 early glutamine responsive genes encode putative transcription factors, including two LBD37-like genes that are involved in the regulation of nitrogen metabolism”

✓ located verbatim in the source · abstract, characters 840–1014 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Glutamine rapidly induced DREB1A expression.

Treatment
Glutaminee0
Gene
DREB1Ae0
Outcome
expressione0
Direction
inducede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“rice roots”

✓ located verbatim in the source · title, characters 120–130 · show in text ↑
e0

“Glutamine also rapidly induced the expression of the DREB1A, IRO2, and NAC5 transcription factor genes”

✓ located verbatim in the source · abstract, characters 1016–1118 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Glutamine rapidly induced IRO2 expression.

Treatment
Glutaminee0
Gene
IRO2e0
Outcome
expressione0
Direction
inducede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“rice roots”

✓ located verbatim in the source · title, characters 120–130 · show in text ↑
e0

“Glutamine also rapidly induced the expression of the DREB1A, IRO2, and NAC5 transcription factor genes”

✓ located verbatim in the source · abstract, characters 1016–1118 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Glutamine rapidly induced NAC5 expression.

Treatment
Glutaminee0
Gene
NAC5e0
Outcome
expressione0
Direction
inducede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“rice roots”

✓ located verbatim in the source · title, characters 120–130 · show in text ↑
e0

“Glutamine also rapidly induced the expression of the DREB1A, IRO2, and NAC5 transcription factor genes”

✓ located verbatim in the source · abstract, characters 1016–1118 · show in text ↑
Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

The authors interpret glutamine as a possible signaling molecule regulating plant gene expression.

Taxon
plantsViridiplantaee0
Compound
glutaminee0
Outcome
gene expressione0
Qualifier
may also function as a signaling moleculee0

Verbatim

e0

“glutamine may also function as a signaling molecule to regulate gene expression in plants”

✓ located verbatim in the source · abstract, characters 1236–1325 · show in text ↑

glutamine · molecular: expression · Oryza sativa (rice)Positive and negative results

7 papers: 6 positive, 1 negative or no effect

5 papers in the same direction as this paper · 1 in the opposite direction

  1. positive
  2. no effect
  3. positive

3 papers more in this group

See all 7 papers →

glutamine · growth · Oryza sativa (rice)Positive and negative results

9 papers: 7 positive, 2 negative or no effect

6 papers in the same direction as this paper · 2 in the opposite direction

  1. no effect
  2. no effect
  3. positive

5 papers more in this group

See all 9 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.