Paper · 2017 · Scientific Reports

Insights into grapevine defense response against drought as revealed by biochemical, physiological and RNA-Seq analysis

Muhammad Salman Haider; Cheng Zhang; Mahantesh M. Kurjogi; et al.

10
claims
19
verbatim quotes
165
citations
4
research areas
✓
Open access · cc-by

Abstract

Abstract Grapevine is an important and extensively grown fruit crop, which is severely hampered by drought worldwide. So, comprehending the impact of drought on grapevine genetic resources is necessary. In the present study, RNA-sequencing was executed using cDNA libraries constructed from both drought-stress and control plants. Results generated 12,451 differentially expressed genes (DEGs), out of which 8,021 genes were up-regulated, and 4,430 were down-regulated. Further physiological and biochemical investigations were also performed to validate the biological processes associated with the development of grapevine in response to drought stress. Results also revealed that decline in the rate of stomatal conductance, in turn, decrease the photosynthetic activity and CO 2 assimilation in the grapevine leaves. Reactive oxygen species, including stress enzymes and their related proteins, and secondary metabolites were also activated in the present study. Likewise, various hormones also induced in response to drought stress. Overall, the present study concludes that these DEGs play both positive and negative roles in drought tolerance by regulating various biological pathways of grapevine. Nevertheless, our findings have provided valuable gene information for future studies of abiotic stress in grapevine and various other fruit crops.

Abstract from the paper’s OpenAlex record; open copy licensed cc-by. Read at the source ↗

The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 10

Method / resourceobservedoriginal resultmeasured

Claim · model-written summary

Drought comparison identified 12,451 differentially expressed genes.

Taxon
GrapevineVitist0
Treatment
drought-stresse1
Outcome
differentially expressed genese0
Value
12,451e0
Comparator
control plantse1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Vitis
Vitis · Taxon · picture of the genus (one of its species)Victor M. Vicente Selvas · Public domain · Wikimedia Commons ↗

Verbatim

e0

“Results generated 12,451 differentially expressed genes (DEGs)”

✓ located verbatim in the source · abstract, characters 331–393 · show in text ↑
e1

“both drought-stress and control plants”

✓ located verbatim in the source · abstract, characters 291–329 · show in text ↑
t0

“Grapevine”

✓ located after whitespace/quote normalisation · title, characters 14–23 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Of the differentially expressed genes, 8,021 were up-regulated.

Taxon
GrapevineVitist0
Outcome
genese0
Direction
up-regulatede0
Value
8,021e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Vitis
Vitis · Taxon · picture of the genus (one of its species)Victor M. Vicente Selvas · Public domain · Wikimedia Commons ↗

Verbatim

e0

“8,021 genes were up-regulated”

✓ located verbatim in the source · abstract, characters 408–437 · show in text ↑
t0

“Grapevine”

✓ located after whitespace/quote normalisation · title, characters 14–23 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Of the differentially expressed genes, 4,430 were down-regulated.

Taxon
GrapevineVitist0
Outcome
differentially expressed genese1
Direction
down-regulatede0
Value
4,430e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Vitis
Vitis · Taxon · picture of the genus (one of its species)Victor M. Vicente Selvas · Public domain · Wikimedia Commons ↗

Verbatim

e0

“4,430 were down-regulated”

✓ located verbatim in the source · abstract, characters 443–468 · show in text ↑
e1

“differentially expressed genes (DEGs)”

✓ located verbatim in the source · abstract, characters 356–393 · show in text ↑
t0

“Grapevine”

✓ located after whitespace/quote normalisation · title, characters 14–23 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Drought decreased stomatal conductance in grapevine leaves.

Taxon
grapevineVitise0
Organ / stage
leavese0
Treatment
drought stresse1
Outcome
rate of stomatal conductancee0
Direction
declinee0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Vitis
Vitis · Taxon · picture of the genus (one of its species)Victor M. Vicente Selvas · Public domain · Wikimedia Commons ↗

Verbatim

e0

“decline in the rate of stomatal conductance, in turn, decrease the photosynthetic activity and CO 2 assimilation in the grapevine leaves”

✓ located verbatim in the source · abstract, characters 683–819 · show in text ↑
e1

“development of grapevine in response to drought stress”

✓ located verbatim in the source · abstract, characters 600–654 · show in text ↑
Mechanismobservedoriginal resultnegativemeasured

Claim · model-written summary

Lower stomatal conductance decreased photosynthetic activity in grapevine leaves.

Taxon
grapevineVitise0
Organ / stage
leavese0
Outcome
photosynthetic activitye0
Direction
decreasee0
Qualifier
decline in the rate of stomatal conductancee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Vitis
Vitis · Taxon · picture of the genus (one of its species)Victor M. Vicente Selvas · Public domain · Wikimedia Commons ↗

Verbatim

e0

“decline in the rate of stomatal conductance, in turn, decrease the photosynthetic activity and CO 2 assimilation in the grapevine leaves”

✓ located verbatim in the source · abstract, characters 683–819 · show in text ↑
Mechanismobservedoriginal resultnegativemeasured

Claim · model-written summary

Lower stomatal conductance decreased CO 2 assimilation in grapevine leaves.

Taxon
grapevineVitise0
Organ / stage
leavese0
Outcome
CO 2 assimilatione0
Direction
decreasee0
Qualifier
decline in the rate of stomatal conductancee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Vitis
Vitis · Taxon · picture of the genus (one of its species)Victor M. Vicente Selvas · Public domain · Wikimedia Commons ↗

Verbatim

e0

“decline in the rate of stomatal conductance, in turn, decrease the photosynthetic activity and CO 2 assimilation in the grapevine leaves”

✓ located verbatim in the source · abstract, characters 683–819 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Reactive oxygen species and stress enzymes were activated.

Taxon
GrapevineVitist0
Outcome
Reactive oxygen species, including stress enzymes and their related proteinse0
Direction
activatede0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Vitis
Vitis · Taxon · picture of the genus (one of its species)Victor M. Vicente Selvas · Public domain · Wikimedia Commons ↗

Verbatim

e0

“Reactive oxygen species, including stress enzymes and their related proteins, and secondary metabolites were also activated in the present study.”

✓ located verbatim in the source · abstract, characters 821–966 · show in text ↑
t0

“Grapevine”

✓ located after whitespace/quote normalisation · title, characters 14–23 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Secondary metabolites were activated.

Taxon
GrapevineVitist0
Outcome
secondary metabolitese0
Direction
activatede0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Vitis
Vitis · Taxon · picture of the genus (one of its species)Victor M. Vicente Selvas · Public domain · Wikimedia Commons ↗

Verbatim

e0

“secondary metabolites were also activated in the present study.”

✓ located verbatim in the source · abstract, characters 903–966 · show in text ↑
t0

“Grapevine”

✓ located after whitespace/quote normalisation · title, characters 14–23 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Various hormones were induced by drought stress.

Taxon
GrapevineVitist0
Treatment
drought stresse0
Outcome
various hormonese0
Direction
inducede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Vitis
Vitis · Taxon · picture of the genus (one of its species)Victor M. Vicente Selvas · Public domain · Wikimedia Commons ↗

Verbatim

e0

“various hormones also induced in response to drought stress.”

✓ located verbatim in the source · abstract, characters 977–1037 · show in text ↑
t0

“Grapevine”

✓ located after whitespace/quote normalisation · title, characters 14–23 · show in text ↑
Mechanismauthor interpretationoriginal resultmixedmeasured

Claim · model-written summary

The differentially expressed genes were interpreted as having positive and negative roles in drought tolerance.

Taxon
grapevineVitise0
Outcome
drought tolerancee0
Qualifier
regulating various biological pathwayse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Vitis
Vitis · Taxon · picture of the genus (one of its species)Victor M. Vicente Selvas · Public domain · Wikimedia Commons ↗

Verbatim

e0

“these DEGs play both positive and negative roles in drought tolerance by regulating various biological pathways of grapevine”

✓ located verbatim in the source · abstract, characters 1080–1204 · show in text ↑

drought · physiology: gas exchange · VitisPositive and negative results

18 papers: 3 positive, 15 negative or no effect

14 papers in the same direction as this paper · 3 in the opposite direction

  1. negative
  2. negative
  3. positive

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