Paper · 2020 · Journal of Agricultural and Food Chemistry

Identification of a Spermidine Synthase Gene from Soybean by Recombinant Expression, Transcriptional Verification, and Sequence Analysis

Dian Zou; Yu Min; Yingli Liu; et al.

7
claims
13
verbatim quotes
19
citations
4
research areas
—
Not open access

Abstract

Spermidine possesses multiple healthy functions, and soybeans contain the most abundant spermidine. In this study, spermidine contents of soybeans from different varieties and production regions in China were evaluated, and a spermidine synthase gene (speE) was identified by recombinant expression, transcriptional verification, and sequence analysis. Spermidine contents of soybean samples from 18 varieties ranged 72.38–228.82 mg/kg, and those from 19 production regions ranged 134.64–242.32 mg/kg. The highest-spermidine sample GZ was used to clone four predicted speE genes. Expressing the gene speE5 improved the spermidine titer by 54% in Bacillus amyloliquefaciens, confirming that speE5 was involved in spermidine synthesis. Transcriptional verification was performed through a soybean germination model. Germination for 48 h led to a onefold increase of spermidine in samples SHX and HB, and corresponding speE5 transcriptional levels were improved by 26-fold and 18-fold, respectively, further verifying the function of speE5. Finally, the sequences of the speE5 gene and deduced amino acids were analyzed, and the conserved sites and catalysis mechanisms were presented. This study identified an active spermidine synthase gene from soybean for the first time, which provided an important gene resource for genetic breeding of spermidine-rich soybean or microbial cell factory.

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Claims 7

Observationobservedoriginal resultmeasured

Claim · model-written summary

Soybean varieties contained 72.38–228.82 mg/kg spermidine.

Taxon
soybeanGlycine maxe0
Outcome
Spermidine contentse0
Value
72.38–228.82 mg/kge0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e0

“Spermidine contents of soybean samples from 18 varieties ranged 72.38–228.82 mg/kg”

✓ located verbatim in the source · abstract, characters 353–435 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Soybean samples from production regions contained 134.64–242.32 mg/kg spermidine.

Taxon
SoybeanGlycine maxt0
Outcome
production regionse0
Value
134.64–242.32 mg/kge0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e0

“those from 19 production regions ranged 134.64–242.32 mg/kg”

✓ located verbatim in the source · abstract, characters 441–500 · show in text ↑
t0

“Soybean”

✓ located verbatim in the source · title, characters 50–57 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Expression of soybean speE5 increased spermidine titer in Bacillus amyloliquefaciens by 54%.

Taxon
SoybeanGlycine maxt0
Treatment
Expressing the gene speE5e0
Gene
speE5e0
Outcome
spermidine titere0
Direction
improvede0
Value
54%e0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

t0

“Soybean”

✓ located verbatim in the source · title, characters 50–57 · show in text ↑
e0

“Expressing the gene speE5 improved the spermidine titer by 54% in Bacillus amyloliquefaciens”

✓ located verbatim in the source · abstract, characters 580–672 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Germination for 48 hours doubled spermidine in SHX and HB soybean samples.

Taxon
SoybeanGlycine maxt0
Material
SHX and HBe0
Treatment
Germination for 48 he0
Outcome
spermidinee0
Direction
increasee0
Value
onefolde0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

t0

“Soybean”

✓ located verbatim in the source · title, characters 50–57 · show in text ↑
e0

“Germination for 48 h led to a onefold increase of spermidine in samples SHX and HB”

✓ located verbatim in the source · abstract, characters 814–896 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Germination increased speE5 transcription 26-fold in SHX.

Taxon
SoybeanGlycine maxt0
Material
SHXe0
Gene
speE5e0
Outcome
speE5 transcriptional levelse0
Direction
improvede0
Value
26-folde0

Not reportedTreatmentComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

t0

“Soybean”

✓ located verbatim in the source · title, characters 50–57 · show in text ↑
e0

“samples SHX and HB, and corresponding speE5 transcriptional levels were improved by 26-fold and 18-fold, respectively”

✓ located verbatim in the source · abstract, characters 878–995 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Germination increased speE5 transcription 18-fold in HB.

Taxon
SoybeanGlycine maxt0
Material
HBe0
Gene
speE5e0
Outcome
speE5 transcriptional levelse0
Direction
improvede0
Value
18-folde0

Not reportedTreatmentComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

t0

“Soybean”

✓ located verbatim in the source · title, characters 50–57 · show in text ↑
e0

“samples SHX and HB, and corresponding speE5 transcriptional levels were improved by 26-fold and 18-fold, respectively”

✓ located verbatim in the source · abstract, characters 878–995 · show in text ↑
Method / resourceobservedoriginal resultpositivebasis n/a

Claim · model-written summary

The study identified an active soybean spermidine synthase gene.

Taxon
soybeanGlycine maxe0
Gene
speEe1
Outcome
active spermidine synthase genee0

Not reportedComparatorValue

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e0

“This study identified an active spermidine synthase gene from soybean for the first time”

✓ located verbatim in the source · abstract, characters 1183–1271 · show in text ↑
e1

“a spermidine synthase gene (speE) was identified”

✓ located verbatim in the source · abstract, characters 224–272 · show in text ↑

processing · molecular: metabolites · Glycine max (soybean)Positive and negative results

38 papers: 26 positive, 12 negative or no effect

25 papers in the same direction as this paper · 12 in the opposite direction

  1. positive
  2. negative
  3. negative

34 papers more in this group

See all 38 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.