Paper · 1988 · Purdue e-Pubs (Purdue University System)

The complementary-DNA encoding the first enzyme of the shikimate pathway in Solanum tuberosum L.

William E. Dyer

17
claims
27
verbatim quotes
0
citations
2
research areas
—
Not open access

Abstract

A glyphosate-tolerant tobacco cell-line, Nicotiana tabacum L. Indiana 7, was selected from the glyphosate-sensitive Wisconsin 38 line. Tolerance and growth characteristics of Indiana 7 cells were the same for cells maintained for more than one year in the presence or absence of glyphosate. Wisconsin 38 cells accumulated 46 times more shikimate than Indiana 7 cells, when cells of both lines were exposed to the herbicide. Specific activities of 3-deoxy- sc D-arabino-heptulosonate 7-phosphate (DAHP) synthase, the first enzyme of the shikimate pathway, and 5-enolpyruvylshikimate 3-phosphate synthase, the target site of glyphosate, were elevated in Indiana 7 cells. Plants regenerated from Indiana 7 cells retained tolerance to glyphosate. A cDNA encoding potato DAHP synthase, the first from any eukaryotic source, was cloned into $\lambda$gt11. The nucleotide suquence was obtained, and the identity of the cDNA was confirmed through partial amino acid sequence analysis of DAHP synthase. The cDNA contains a 1521 bp open reading frame that encodes a polypeptide with a calculated molecular weight of 56,108. The N-terminus of the deduced amino acid sequence of potato DAHP synthase resembles a transit peptide that has regions of charged amino acid residues in common with other chloroplast transit peptide sequences. Amino acid sequence identity between the mature potato DAHP synthase and the E. coli Phe-sensitive DAHP synthase is 27%. Wounding potato tubers induced steady-state levels of translatable DAHP synthase mRNA seven-fold. The mRNA increase was followed by a comparable elevation of enzyme activity and amount. The induction was localized to the wound site, but was maximal in periderm tissue, indicating tissue-specific regulation within the potato tuber. DAHP synthase was also wound-induced in potato leaves and tomato fruit. The regulation of DAHP synthase in response to stress conditions confirms its role as a key regulatory enzyme of the shikimate pathway.

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The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 17

Intervention effectobservedoriginal resultno effectmeasured

Claim · model-written summary

Tolerance and growth of Indiana 7 cells were the same whether or not they were maintained on glyphosate for more than one year.

Material
Indiana 7e1
Treatment
glyphosatee1
Outcome
tolerance and growth characteristicse1
Direction
the samee1
Comparator
absence of glyphosatee1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana tabacum
Nicotiana tabacum · TaxonJom / Joachim Müllerchen · CC BY 2.5 · Wikimedia Commons ↗

Verbatim

e1

“Tolerance and growth characteristics of Indiana 7 cells were the same for cells maintained for more than one year in the presence or absence of glyphosate”

✓ located verbatim in the source · abstract, characters 135–289 · show in text ↑
e2

“A glyphosate-tolerant tobacco cell-line, Nicotiana tabacum L. Indiana 7, was selected from the glyphosate-sensitive Wisconsin 38 line”

✓ located verbatim in the source · abstract, characters 0–133 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Wisconsin 38 cells accumulated 46 times more shikimate than Indiana 7 cells when both lines were exposed to the herbicide.

Material
Wisconsin 38e1
Treatment
exposed to the herbicidee1
Outcome
shikimatee1
Direction
moree1
Value
46 timese1
Comparator
Indiana 7e1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana tabacum
Nicotiana tabacum · TaxonJom / Joachim Müllerchen · CC BY 2.5 · Wikimedia Commons ↗

Verbatim

e1

“Wisconsin 38 cells accumulated 46 times more shikimate than Indiana 7 cells, when cells of both lines were exposed to the herbicide”

✓ located verbatim in the source · abstract, characters 291–422 · show in text ↑
e2

“A glyphosate-tolerant tobacco cell-line, Nicotiana tabacum L. Indiana 7, was selected from the glyphosate-sensitive Wisconsin 38 line”

✓ located verbatim in the source · abstract, characters 0–133 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Specific activity of DAHP synthase was elevated in Indiana 7 cells.

Material
Indiana 7e1
Gene
3-deoxy- sc D-arabino-heptulosonate 7-phosphate (DAHP) synthasee1
Outcome
Specific activitiese1
Direction
elevatede1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana tabacum
Nicotiana tabacum · TaxonJom / Joachim Müllerchen · CC BY 2.5 · Wikimedia Commons ↗

Verbatim

e1

“Specific activities of 3-deoxy- sc D-arabino-heptulosonate 7-phosphate (DAHP) synthase, the first enzyme of the shikimate pathway, and 5-enolpyruvylshikimate 3-phosphate synthase, the target site of glyphosate, were elevated in Indiana 7 cells”

✓ located verbatim in the source · abstract, characters 424–667 · show in text ↑
e2

“A glyphosate-tolerant tobacco cell-line, Nicotiana tabacum L. Indiana 7, was selected from the glyphosate-sensitive Wisconsin 38 line”

✓ located verbatim in the source · abstract, characters 0–133 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Specific activity of 5-enolpyruvylshikimate 3-phosphate synthase, the glyphosate target, was elevated in Indiana 7 cells.

Material
Indiana 7e1
Gene
5-enolpyruvylshikimate 3-phosphate synthasee1
Outcome
Specific activitiese1
Direction
elevatede1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana tabacum
Nicotiana tabacum · TaxonJom / Joachim Müllerchen · CC BY 2.5 · Wikimedia Commons ↗

Verbatim

e1

“Specific activities of 3-deoxy- sc D-arabino-heptulosonate 7-phosphate (DAHP) synthase, the first enzyme of the shikimate pathway, and 5-enolpyruvylshikimate 3-phosphate synthase, the target site of glyphosate, were elevated in Indiana 7 cells”

✓ located verbatim in the source · abstract, characters 424–667 · show in text ↑
e2

“A glyphosate-tolerant tobacco cell-line, Nicotiana tabacum L. Indiana 7, was selected from the glyphosate-sensitive Wisconsin 38 line”

✓ located verbatim in the source · abstract, characters 0–133 · show in text ↑
Observationobservedoriginal resultpositivemeasured

Claim · model-written summary

Plants regenerated from Indiana 7 cells retained tolerance to glyphosate.

Material
Indiana 7e1
Outcome
tolerance to glyphosatee1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana tabacum
Nicotiana tabacum · TaxonJom / Joachim Müllerchen · CC BY 2.5 · Wikimedia Commons ↗

Verbatim

e1

“Plants regenerated from Indiana 7 cells retained tolerance to glyphosate”

✓ located verbatim in the source · abstract, characters 669–741 · show in text ↑
e2

“A glyphosate-tolerant tobacco cell-line, Nicotiana tabacum L. Indiana 7, was selected from the glyphosate-sensitive Wisconsin 38 line”

✓ located verbatim in the source · abstract, characters 0–133 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

A cDNA encoding potato DAHP synthase was cloned, the first from any eukaryotic source.

Gene
DAHP synthasee1
Outcome
cDNA encoding potato DAHP synthasee1
Qualifier
the first from any eukaryotic sourcee1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum tuberosum
Solanum tuberosum · TaxonScott Bauer, USDA ARS · Public domain · Wikimedia Commons ↗

Verbatim

e1

“A cDNA encoding potato DAHP synthase, the first from any eukaryotic source, was cloned into”

✓ located verbatim in the source · abstract, characters 743–834 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

The identity of the potato DAHP synthase cDNA was confirmed by partial amino acid sequence analysis.

Gene
DAHP synthasee1
Outcome
identity of the cDNAe1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum tuberosum
Solanum tuberosum · TaxonScott Bauer, USDA ARS · Public domain · Wikimedia Commons ↗

Verbatim

e1

“the identity of the cDNA was confirmed through partial amino acid sequence analysis of DAHP synthase”

✓ located verbatim in the source · abstract, characters 892–992 · show in text ↑
e2

“A cDNA encoding potato DAHP synthase, the first from any eukaryotic source, was cloned into”

✓ located verbatim in the source · abstract, characters 743–834 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

The potato DAHP synthase cDNA contains a 1521 bp open reading frame.

Outcome
open reading framee1
Value
1521 bpe1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum tuberosum
Solanum tuberosum · TaxonScott Bauer, USDA ARS · Public domain · Wikimedia Commons ↗

Verbatim

e1

“The cDNA contains a 1521 bp open reading frame that encodes a polypeptide with a calculated molecular weight of 56,108”

✓ located verbatim in the source · abstract, characters 994–1112 · show in text ↑
e2

“A cDNA encoding potato DAHP synthase, the first from any eukaryotic source, was cloned into”

✓ located verbatim in the source · abstract, characters 743–834 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

The calculated molecular weight of the potato DAHP synthase polypeptide is 56,108.

Outcome
calculated molecular weighte1
Value
56,108e1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum tuberosum
Solanum tuberosum · TaxonScott Bauer, USDA ARS · Public domain · Wikimedia Commons ↗

Verbatim

e1

“The cDNA contains a 1521 bp open reading frame that encodes a polypeptide with a calculated molecular weight of 56,108”

✓ located verbatim in the source · abstract, characters 994–1112 · show in text ↑
e2

“A cDNA encoding potato DAHP synthase, the first from any eukaryotic source, was cloned into”

✓ located verbatim in the source · abstract, characters 743–834 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

The N-terminus of potato DAHP synthase resembles a chloroplast transit peptide.

Gene
DAHP synthasee1
Outcome
N-terminus of the deduced amino acid sequencee1
Qualifier
resembles a transit peptide that has regions of charged amino acid residues in common with other chloroplast transit peptide sequencese1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum tuberosum
Solanum tuberosum · TaxonScott Bauer, USDA ARS · Public domain · Wikimedia Commons ↗

Verbatim

e1

“The N-terminus of the deduced amino acid sequence of potato DAHP synthase resembles a transit peptide that has regions of charged amino acid residues in common with other chloroplast transit peptide sequences”

✓ located verbatim in the source · abstract, characters 1114–1322 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Mature potato DAHP synthase shares 27% amino acid sequence identity with the E. coli Phe-sensitive DAHP synthase.

Gene
DAHP synthasee1
Outcome
Amino acid sequence identitye1
Value
27%e1
Comparator
E. coli Phe-sensitive DAHP synthasee1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum tuberosum
Solanum tuberosum · TaxonScott Bauer, USDA ARS · Public domain · Wikimedia Commons ↗

Verbatim

e1

“Amino acid sequence identity between the mature potato DAHP synthase and the E. coli Phe-sensitive DAHP synthase is 27%”

✓ located verbatim in the source · abstract, characters 1324–1443 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Wounding of potato tubers induced steady-state DAHP synthase mRNA levels seven-fold.

Organ / stage
tuberse1
Treatment
Woundinge1
Gene
DAHP synthasee1
Outcome
steady-state levels of translatable DAHP synthase mRNAe1
Direction
inducede1
Value
seven-folde1

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum tuberosum
Solanum tuberosum · TaxonScott Bauer, USDA ARS · Public domain · Wikimedia Commons ↗

Verbatim

e1

“Wounding potato tubers induced steady-state levels of translatable DAHP synthase mRNA seven-fold”

✓ located verbatim in the source · abstract, characters 1445–1541 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Wounding was followed by a comparable elevation of DAHP synthase enzyme activity and amount in potato.

Treatment
Woundinge2
Outcome
enzyme activity and amounte1
Direction
elevatione1

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum tuberosum
Solanum tuberosum · TaxonScott Bauer, USDA ARS · Public domain · Wikimedia Commons ↗

Verbatim

e1

“The mRNA increase was followed by a comparable elevation of enzyme activity and amount”

✓ located verbatim in the source · abstract, characters 1543–1629 · show in text ↑
e2

“Wounding potato tubers induced steady-state levels of translatable DAHP synthase mRNA seven-fold”

✓ located verbatim in the source · abstract, characters 1445–1541 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Wound-induced DAHP synthase induction was localized to the wound site and was maximal in potato periderm tissue.

Organ / stage
periderm tissuee1
Outcome
inductione1
Direction
maximale1
Qualifier
localized to the wound sitee1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum tuberosum
Solanum tuberosum · TaxonScott Bauer, USDA ARS · Public domain · Wikimedia Commons ↗

Verbatim

e1

“The induction was localized to the wound site, but was maximal in periderm tissue, indicating tissue-specific regulation within the potato tuber”

✓ located verbatim in the source · abstract, characters 1631–1775 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

DAHP synthase was wound-induced in potato leaves.

Organ / stage
leavese1
Treatment
wounde1
Gene
DAHP synthasee1
Outcome
DAHP synthasee1
Direction
wound-inducede1

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum tuberosum
Solanum tuberosum · TaxonScott Bauer, USDA ARS · Public domain · Wikimedia Commons ↗

Verbatim

e1

“DAHP synthase was also wound-induced in potato leaves and tomato fruit”

✓ located verbatim in the source · abstract, characters 1777–1847 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

DAHP synthase was wound-induced in tomato fruit.

Organ / stage
fruite1
Treatment
wounde1
Gene
DAHP synthasee1
Outcome
DAHP synthasee1
Direction
wound-inducede1

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e1

“DAHP synthase was also wound-induced in potato leaves and tomato fruit”

✓ located verbatim in the source · abstract, characters 1777–1847 · show in text ↑
Mechanismauthor interpretationoriginal resultbasis n/a

Claim · model-written summary

The wound-responsive regulation of DAHP synthase confirms its role as a key regulatory enzyme of the shikimate pathway.

Gene
DAHP synthasee1
Outcome
role as a key regulatory enzyme of the shikimate pathwaye1
Qualifier
in response to stress conditionse1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum tuberosum
Solanum tuberosum · TaxonScott Bauer, USDA ARS · Public domain · Wikimedia Commons ↗

Verbatim

e1

“The regulation of DAHP synthase in response to stress conditions confirms its role as a key regulatory enzyme of the shikimate pathway”

✓ located verbatim in the source · abstract, characters 1849–1983 · show in text ↑
e2

“A cDNA encoding potato DAHP synthase, the first from any eukaryotic source, was cloned into”

✓ located verbatim in the source · abstract, characters 743–834 · show in text ↑

glyphosate · disease · Nicotiana tabacum (tobacco)Positive and negative results

5 papers: 2 positive, 3 negative or no effect

2 papers in the same direction as this paper · 2 in the opposite direction

  1. positive
  2. positive
  3. negative

1 paper more in this group

See all 5 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.