Paper · 2022 · Frontiers in Plant Science

Genotypic Variation of Nitrogen Use Efficiency and Amino Acid Metabolism in Barley

Bérengère Decouard; Marlène Bailly; Martine Rigault; et al.

13
claims
24
verbatim quotes
34
citations
3
research areas
✓
Open access · cc-by

Abstract

Owing to the large genetic diversity of barley and its resilience under harsh environments, this crop is of great value for agroecological transition and the need for reduction of nitrogen (N) fertilizers inputs. In the present work, we investigated the diversity of a North African barley genotype collection in terms of growth under limiting N (LN) or ample N (HN) supply and in terms of physiological traits including amino acid content in young seedlings. We identified a Moroccan variety, Laanaceur, accumulating five times more lysine in its leaves than the others under both N nutritional regimes. Physiological characterization of the barley collection showed the genetic diversity of barley adaptation strategies to LN and highlighted a genotype x environment interaction. In all genotypes, N limitation resulted in global biomass reduction, an increase in C concentration, and a higher resource allocation to the roots, indicating that this organ undergoes important adaptive metabolic activity. The most important diversity concerned leaf nitrogen use efficiency (LNUE), root nitrogen use efficiency (RNUE), root nitrogen uptake efficiency (RNUpE), and leaf nitrogen uptake efficiency (LNUpE). Using LNUE as a target trait reflecting barley capacity to deal with N limitation, this trait was positively correlated with plant nitrogen uptake efficiency (PNUpE) and RNUpE. Based on the LNUE trait, we determined three classes showing high, moderate, or low tolerance to N limitation. The transcriptomic approach showed that signaling, ionic transport, immunity, and stress response were the major functions affected by N supply. A candidate gene encoding the HvNRT2.10 transporter was commonly up-regulated under LN in the three barley genotypes investigated. Genes encoding key enzymes required for lysine biosynthesis in plants, dihydrodipicolinate synthase (DHPS) and the catabolic enzyme, the bifunctional Lys-ketoglutarate reductase/saccharopine dehydrogenase are up-regulated in Laanaceur and likely account for a hyperaccumulation of lysine in this genotype. Our work provides key physiological markers of North African barley response to low N availability in the early developmental stages.

Abstract from the paper’s OpenAlex record; open copy licensed cc-by. Read at the source ↗

The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 13

Associationobservedoriginal resultpositivemeasured

Claim · model-written summary

Laanaceur leaves accumulated five times more lysine than other varieties under both nitrogen regimes.

Material
Laanaceure0
Organ / stage
leavese0
Outcome
lysinee0
Direction
moree0
Value
five timese0
Qualifier
both N nutritional regimese0
Comparator
the otherse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Hordeum vulgare
Hordeum vulgare · TaxonJackyM59 · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“We identified a Moroccan variety, Laanaceur, accumulating five times more lysine in its leaves than the others under both N nutritional regimes.”

✓ located verbatim in the source · abstract, characters 460–604 · show in text ↑
t0

“barley”

✓ located after whitespace/quote normalisation · title, characters 76–82 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Barley adaptation to limiting nitrogen showed a genotype by environment interaction.

Material
barley collectione0
Outcome
genotype x environment interactione0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Hordeum vulgare
Hordeum vulgare · TaxonJackyM59 · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Physiological characterization of the barley collection showed the genetic diversity of barley adaptation strategies to LN and highlighted a genotype x environment interaction.”

✓ located verbatim in the source · abstract, characters 605–781 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Nitrogen limitation reduced biomass in all barley genotypes.

Treatment
N limitatione0
Outcome
biomasse0
Direction
reductione0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Hordeum vulgare
Hordeum vulgare · TaxonJackyM59 · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“In all genotypes, N limitation resulted in global biomass reduction, an increase in C concentration, and a higher resource allocation to the roots”

✓ located verbatim in the source · abstract, characters 782–928 · show in text ↑
t0

“barley”

✓ located after whitespace/quote normalisation · title, characters 76–82 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Nitrogen limitation increased carbon concentration in all barley genotypes.

Treatment
N limitatione0
Outcome
C concentratione0
Direction
increasee0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Hordeum vulgare
Hordeum vulgare · TaxonJackyM59 · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“In all genotypes, N limitation resulted in global biomass reduction, an increase in C concentration, and a higher resource allocation to the roots”

✓ located verbatim in the source · abstract, characters 782–928 · show in text ↑
t0

“barley”

✓ located after whitespace/quote normalisation · title, characters 76–82 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Nitrogen limitation increased allocation to barley roots.

Treatment
N limitatione0
Outcome
resource allocation to the rootse0
Direction
highere0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Hordeum vulgare
Hordeum vulgare · TaxonJackyM59 · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“In all genotypes, N limitation resulted in global biomass reduction, an increase in C concentration, and a higher resource allocation to the roots”

✓ located verbatim in the source · abstract, characters 782–928 · show in text ↑
t0

“barley”

✓ located after whitespace/quote normalisation · title, characters 76–82 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

The greatest genotypic diversity concerned four leaf and root nitrogen use and uptake efficiency traits.

Outcome
leaf nitrogen use efficiency (LNUE), root nitrogen use efficiency (RNUE), root nitrogen uptake efficiency (RNUpE), and leaf nitrogen uptake efficiency (LNUpE)e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Hordeum vulgare
Hordeum vulgare · TaxonJackyM59 · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“The most important diversity concerned leaf nitrogen use efficiency (LNUE), root nitrogen use efficiency (RNUE), root nitrogen uptake efficiency (RNUpE), and leaf nitrogen uptake efficiency (LNUpE).”

✓ located verbatim in the source · abstract, characters 1006–1204 · show in text ↑
t0

“barley”

✓ located after whitespace/quote normalisation · title, characters 76–82 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Leaf nitrogen use efficiency positively correlated with plant nitrogen uptake efficiency.

Outcome
plant nitrogen uptake efficiency (PNUpE)e0
Direction
positively correlatede0
Comparator
LNUEe0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Hordeum vulgare
Hordeum vulgare · TaxonJackyM59 · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Using LNUE as a target trait reflecting barley capacity to deal with N limitation, this trait was positively correlated with plant nitrogen uptake efficiency (PNUpE) and RNUpE.”

✓ located verbatim in the source · abstract, characters 1205–1381 · show in text ↑
t0

“barley”

✓ located after whitespace/quote normalisation · title, characters 76–82 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Leaf nitrogen use efficiency positively correlated with root nitrogen use efficiency.

Outcome
RNUpEe0
Direction
positively correlatede0
Comparator
LNUEe0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Hordeum vulgare
Hordeum vulgare · TaxonJackyM59 · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Using LNUE as a target trait reflecting barley capacity to deal with N limitation, this trait was positively correlated with plant nitrogen uptake efficiency (PNUpE) and RNUpE.”

✓ located verbatim in the source · abstract, characters 1205–1381 · show in text ↑
t0

“barley”

✓ located after whitespace/quote normalisation · title, characters 76–82 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

The authors classified barley genotypes as high, moderate or low in tolerance to nitrogen limitation.

Outcome
tolerance to N limitatione0
Value
three classese0
Qualifier
LNUE traite0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Hordeum vulgare
Hordeum vulgare · TaxonJackyM59 · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Based on the LNUE trait, we determined three classes showing high, moderate, or low tolerance to N limitation.”

✓ located verbatim in the source · abstract, characters 1382–1492 · show in text ↑
t0

“barley”

✓ located after whitespace/quote normalisation · title, characters 76–82 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Nitrogen supply affected signaling, ionic transport, immunity and stress-response functions.

Treatment
N supplye0
Outcome
signaling, ionic transport, immunity, and stress responsee0
Direction
affectede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Hordeum vulgare
Hordeum vulgare · TaxonJackyM59 · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“The transcriptomic approach showed that signaling, ionic transport, immunity, and stress response were the major functions affected by N supply.”

✓ located verbatim in the source · abstract, characters 1493–1637 · show in text ↑
t0

“barley”

✓ located after whitespace/quote normalisation · title, characters 76–82 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

HvNRT2.10 was upregulated under low nitrogen in three barley genotypes.

Treatment
LNe0
Gene
HvNRT2.10e0
Outcome
HvNRT2.10 transportere0
Direction
up-regulatede0
Value
threee0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Hordeum vulgare
Hordeum vulgare · TaxonJackyM59 · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“A candidate gene encoding the HvNRT2.10 transporter was commonly up-regulated under LN in the three barley genotypes investigated.”

✓ located verbatim in the source · abstract, characters 1638–1768 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Lysine biosynthesis and catabolism enzyme genes were upregulated in Laanaceur.

Material
Laanaceure0
Gene
dihydrodipicolinate synthase (DHPS)e0
Outcome
Genes encoding key enzymes required for lysine biosynthesise0
Direction
up-regulatede0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Hordeum vulgare
Hordeum vulgare · TaxonJackyM59 · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Genes encoding key enzymes required for lysine biosynthesis in plants, dihydrodipicolinate synthase (DHPS) and the catabolic enzyme, the bifunctional Lys-ketoglutarate reductase/saccharopine dehydrogenase are up-regulated in Laanaceur”

✓ located verbatim in the source · abstract, characters 1769–2003 · show in text ↑
t0

“barley”

✓ located after whitespace/quote normalisation · title, characters 76–82 · show in text ↑
Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

The authors infer that upregulated lysine metabolic genes likely explain Laanaceur lysine accumulation.

Material
Laanaceure0
Outcome
hyperaccumulation of lysinee0
Qualifier
up-regulatede0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Hordeum vulgare
Hordeum vulgare · TaxonJackyM59 · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“are up-regulated in Laanaceur and likely account for a hyperaccumulation of lysine in this genotype.”

✓ located verbatim in the source · abstract, characters 1974–2074 · show in text ↑
t0

“barley”

✓ located after whitespace/quote normalisation · title, characters 76–82 · show in text ↑

nitrogen · growth · Hordeum vulgare (barley)Results differ

110 papers: 66 positive, 44 negative or no effect

65 papers in the same direction as this paper · 42 in the opposite direction · 2 reporting no difference from an alternative

This paper is about lacking the nutrient, so it counts the other way round here.

  1. negative
  2. positive
  3. no effect

106 papers more in this group

See all 110 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.