Paper · 2022 · Molecules

Effect of Processing Treatment and Modified Atmosphere Packing on Carrot’s Microbial Community Structure by Illumina MiSeq Sequencing

Katarzyna Ratajczak; Justyna Staninska-Pięta; Jakub Czarny; et al.

11
claims
16
verbatim quotes
4
citations
3
research areas
✓
Open access · cc-by

Abstract

The aim of this study was to analyze the microbiome of carrot (Daucus carota subsp. sativus) subjected to minimal pre-treatment (rinsing in organic acid solution) and packaging in a high-oxygen modified atmosphere, and then stored for 17 days under refrigeration conditions (4 °C). The highest levels of bacteria in the carrot microbiome were characterized, at almost 78%, by bacteria belonging to the Enterobacteriaceae and Pseudomonadaceae families. Rinsing in a solution of ascorbic and citric acids resulted in the improvement of microbiological quality in the first day of storage. However, the use of a high-oxygen modified atmosphere extended the shelf life of the minimally processed product. Compared to carrots stored in air, those stored in high oxygen concentration were characterized by a greater ratio of bacteria belonging to the Serratia and Enterobacter genera, and a lower ratio belonging to the Pseudomonas and Pantoea genera. Moreover, the β-biodiversity analysis confirmed that the oxygen concentration was the main factor influencing the differentiation of the metabiomes of the stored carrots. The bacterial strains isolated from carrots identified by molecular methods were mostly pathogenic or potentially pathogenic microorganisms. Neither the minimal pre-treatment nor packaging in high-oxygen atmosphere was able to eliminate the threat of pathogenic bacteria emerging in the product.

Abstract from the paper’s OpenAlex record; open copy licensed cc-by. Read at the source ↗

The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 11

Observationobservedoriginal resultmeasured

Claim · model-written summary

Enterobacteriaceae and Pseudomonadaceae comprised almost 78% of carrot microbiome bacteria.

Taxon
carrotDaucus carotat0
Outcome
bacteria belonging to the Enterobacteriaceae and Pseudomonadaceae familiese0
Value
almost 78%e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Daucus carota
Daucus carota · TaxonZeynel Cebeci · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“almost 78%, by bacteria belonging to the Enterobacteriaceae and Pseudomonadaceae families”

✓ located verbatim in the source · abstract, characters 361–450 · show in text ↑
t0

“Carrot”

✓ located verbatim in the source · title, characters 66–72 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Rinsing in ascorbic and citric acids improved microbiological quality on storage day one.

Taxon
carrotDaucus carotat0
Treatment
Rinsing in a solution of ascorbic and citric acidse0
Outcome
microbiological qualitye0
Direction
improvemente0
Qualifier
first day of storagee0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Daucus carota
Daucus carota · TaxonZeynel Cebeci · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Rinsing in a solution of ascorbic and citric acids resulted in the improvement of microbiological quality in the first day of storage”

✓ located verbatim in the source · abstract, characters 452–585 · show in text ↑
t0

“Carrot”

✓ located verbatim in the source · title, characters 66–72 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

High-oxygen modified atmosphere extended shelf life.

Taxon
carrotDaucus carotat0
Treatment
high-oxygen modified atmospheree0
Outcome
shelf lifee0
Direction
extendede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Daucus carota
Daucus carota · TaxonZeynel Cebeci · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“use of a high-oxygen modified atmosphere extended the shelf life of the minimally processed product”

✓ located verbatim in the source · abstract, characters 600–699 · show in text ↑
t0

“Carrot”

✓ located verbatim in the source · title, characters 66–72 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

High oxygen increased the ratio of Serratia relative to air storage.

Taxon
carrotsDaucus carotae0
Treatment
high oxygen concentratione0
Interactor
Serratiae0other
Outcome
ratio of bacteria belonging to the Serratiae0
Direction
greatere0
Comparator
stored in aire0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Daucus carota
Daucus carota · TaxonZeynel Cebeci · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Compared to carrots stored in air, those stored in high oxygen concentration were characterized by a greater ratio of bacteria belonging to the Serratia and Enterobacter genera”

✓ located verbatim in the source · abstract, characters 701–877 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

High oxygen increased the ratio of Enterobacter relative to air storage.

Taxon
carrotsDaucus carotae0
Treatment
high oxygen concentratione0
Interactor
EnterobacterEnterobactere0other
Outcome
Enterobacter generae0
Direction
greatere0
Comparator
stored in aire0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Daucus carota
Daucus carota · TaxonZeynel Cebeci · CC BY-SA 4.0 · Wikimedia Commons ↗
Enterobacter
Enterobacter · Interactor · picture of the genus (one of its species)Public domain · Wikimedia Commons ↗

Verbatim

e0

“Compared to carrots stored in air, those stored in high oxygen concentration were characterized by a greater ratio of bacteria belonging to the Serratia and Enterobacter genera”

✓ located verbatim in the source · abstract, characters 701–877 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

High oxygen lowered the Pseudomonas ratio relative to air storage.

Taxon
carrotsDaucus carotae0
Treatment
high oxygen concentratione0
Interactor
PseudomonasPseudomonase0other
Outcome
ratio belonging to the Pseudomonase0
Direction
lowere0
Comparator
stored in aire0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Daucus carota
Daucus carota · TaxonZeynel Cebeci · CC BY-SA 4.0 · Wikimedia Commons ↗
Pseudomonas
Pseudomonas · Interactor · picture of the genus (one of its species)CDC · Public domain · Wikimedia Commons ↗

Verbatim

e0

“Compared to carrots stored in air, those stored in high oxygen concentration were characterized by a greater ratio of bacteria belonging to the Serratia and Enterobacter genera, and a lower ratio belonging to the Pseudomonas and Pantoea genera”

✓ located verbatim in the source · abstract, characters 701–944 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

High oxygen lowered the Pantoea ratio relative to air storage.

Taxon
carrotsDaucus carotae0
Treatment
high oxygen concentratione0
Interactor
PantoeaPantoeae0other
Outcome
Pantoea generae0
Direction
lowere0
Comparator
stored in aire0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Daucus carota
Daucus carota · TaxonZeynel Cebeci · CC BY-SA 4.0 · Wikimedia Commons ↗
Pantoea
Pantoea · Interactor · picture of the genus (one of its species)Agricultural Research Service (NRRL)Culture Collection · Public domain · Wikimedia Commons ↗

Verbatim

e0

“Compared to carrots stored in air, those stored in high oxygen concentration were characterized by a greater ratio of bacteria belonging to the Serratia and Enterobacter genera, and a lower ratio belonging to the Pseudomonas and Pantoea genera”

✓ located verbatim in the source · abstract, characters 701–944 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Oxygen concentration was the main factor differentiating stored carrot metabiomes.

Taxon
carrotsDaucus carotae0
Treatment
oxygen concentratione0
Outcome
differentiation of the metabiomese0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Daucus carota
Daucus carota · TaxonZeynel Cebeci · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“oxygen concentration was the main factor influencing the differentiation of the metabiomes of the stored carrots”

✓ located verbatim in the source · abstract, characters 1003–1115 · show in text ↑
Observationobservedoriginal resultnegativemeasured

Claim · model-written summary

Most bacterial isolates from carrots were pathogenic or potentially pathogenic.

Taxon
carrotsDaucus carotae0
Outcome
bacterial strains isolated from carrotse0
Qualifier
mostly pathogenic or potentially pathogenic microorganismse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Daucus carota
Daucus carota · TaxonZeynel Cebeci · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“bacterial strains isolated from carrots identified by molecular methods were mostly pathogenic or potentially pathogenic microorganisms”

✓ located verbatim in the source · abstract, characters 1121–1256 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Minimal pretreatment did not eliminate risk of pathogenic bacteria in carrots.

Taxon
carrotDaucus carotat0
Treatment
minimal pre-treatmente0
Outcome
threat of pathogenic bacteria emerging in the producte0
Direction
was able to eliminatee0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Daucus carota
Daucus carota · TaxonZeynel Cebeci · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Neither the minimal pre-treatment nor packaging in high-oxygen atmosphere was able to eliminate the threat of pathogenic bacteria emerging in the product”

✓ located verbatim in the source · abstract, characters 1258–1411 · show in text ↑
t0

“Carrot”

✓ located verbatim in the source · title, characters 66–72 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

High-oxygen packaging did not eliminate risk of pathogenic bacteria in carrots.

Taxon
carrotDaucus carotat0
Treatment
packaging in high-oxygen atmospheree0
Outcome
threat of pathogenic bacteria emerging in the producte0
Direction
was able to eliminatee0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Daucus carota
Daucus carota · TaxonZeynel Cebeci · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Neither the minimal pre-treatment nor packaging in high-oxygen atmosphere was able to eliminate the threat of pathogenic bacteria emerging in the product”

✓ located verbatim in the source · abstract, characters 1258–1411 · show in text ↑
t0

“Carrot”

✓ located verbatim in the source · title, characters 66–72 · show in text ↑

citric acid · quality: general · Daucus carota (carrot)Results agree

2 papers: 2 positive, 0 negative or no effect

1 paper in the same direction as this paper

  1. positive
See all 2 papers →

storage · disease · Daucus carota (carrot)Positive and negative results

4 papers: 2 positive, 2 negative or no effect

1 paper in the same direction as this paper · 2 in the opposite direction

  1. positive
  2. positive
  3. no effect
See all 4 papers →

storage · quality: postharvest · Daucus carota (carrot)Positive and negative results

22 papers: 16 positive, 6 negative or no effect

15 papers in the same direction as this paper · 6 in the opposite direction

  1. negative
  2. negative
  3. no effect

18 papers more in this group

See all 22 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.