Paper · 2023 · Journal of Integrative Agriculture

Comparative transcriptome and lipidome reveal that a low K+ signal effectively alleviates the effect induced by Ca2+ deficiency in cotton fibers

Kai GUO; Wei GAO; Tao-rui ZHANG; et al.

15
claims
30
verbatim quotes
1
citations
3
research areas
✓
Open access · cc-by-nc-nd

Abstract

Calcium (Ca2+) plays important roles in determining plant growth and development owing to its function in maintaining cell wall and membrane integrity. Therefore, understanding the role of Ca2+ in carbon and lipid metabolism could provide insights into the dynamic changes of cell membranes and cell walls during rapid elongation of cotton fibers. In the present study, we found that the lack of Ca2+ promoted fiber elongation and ovule rapid expansion, but also caused tissue browning in ovule culture system. RNA-sequencing revealed that Ca2+ deficiency induced cells to be in a highly oxidized state, and the expression of genes related to carbon metabolism and lipid metabolism was activated significantly. All gene members of 9 key enzymes involving in glycolysis were up-regulated, and glucose was significantly reduced in Ca2+ deficiency treated tissues. Ca2+ deficiency adjusted the flowing of glycolysis metabolic. However, low K+ recovered the expression levels of glycolysis genes and glucose content caused by Ca2+ deficiency. Electrospray ionization-tandem mass spectrometry technology was applied to uncover the dynamic profile of lipidome under Ca2+ and K+ interacted condition. Ca2+ deficiency led to the decrease of fatty acid (FA), diacylglycerol (DAG) and glycolipid, and the significant increase of triacylglycerol (TAG), phospholipid PE (phosphatidylethanolamine), PG (phosphatidylglycerol) and PC (phosphatidylcholine). Low K+ restored the contents of FA, phospholipids and glycolipids, effectively relieved the symptoms caused by Ca2+ deficiency, and recovered the development of fiber cells. This study revealed dynamic changes in transcript and metabolic levels, and uncovered the signaling interaction of Ca2+ deficiency and low K+ in glycolysis and lipid metabolism during fiber development.

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The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 15

Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Calcium deficiency promoted cotton fiber elongation.

Treatment
lack of Ca2+e0
Outcome
fiber elongatione0
Direction
promotede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Gossypium hirsutum
Gossypium hirsutum · TaxonChriKo · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“the lack of Ca2+ promoted fiber elongation and ovule rapid expansion, but also caused tissue browning in ovule culture system”

✓ located verbatim in the source · abstract, characters 384–509 · show in text ↑
t0

“cotton fibers”

✓ located verbatim in the source · title, characters 131–144 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Calcium deficiency promoted rapid ovule expansion.

Treatment
lack of Ca2+e0
Outcome
ovule rapid expansione0
Direction
promotede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Gossypium hirsutum
Gossypium hirsutum · TaxonChriKo · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“the lack of Ca2+ promoted fiber elongation and ovule rapid expansion, but also caused tissue browning in ovule culture system”

✓ located verbatim in the source · abstract, characters 384–509 · show in text ↑
t0

“cotton fibers”

✓ located verbatim in the source · title, characters 131–144 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Calcium deficiency caused ovule tissue browning in culture.

Organ / stage
ovulee0
Treatment
lack of Ca2+e0
Outcome
tissue browninge0

Not reportedComparatorDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Gossypium hirsutum
Gossypium hirsutum · TaxonChriKo · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“the lack of Ca2+ promoted fiber elongation and ovule rapid expansion, but also caused tissue browning in ovule culture system”

✓ located verbatim in the source · abstract, characters 384–509 · show in text ↑
t0

“cotton fibers”

✓ located verbatim in the source · title, characters 131–144 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Calcium deficiency induced a highly oxidized cellular state.

Treatment
Ca2+ deficiencye0
Outcome
highly oxidized statee0

Not reportedComparatorDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Gossypium hirsutum
Gossypium hirsutum · TaxonChriKo · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Ca2+ deficiency induced cells to be in a highly oxidized state”

✓ located verbatim in the source · abstract, characters 540–602 · show in text ↑
t0

“cotton fibers”

✓ located verbatim in the source · title, characters 131–144 · show in text ↑
Intervention effectobservedoriginal resultmixedsignificant (as stated)measured

Claim · model-written summary

Calcium deficiency significantly activated expression of carbon and lipid metabolism genes.

Treatment
Ca2+ deficiencyt0
Outcome
expression of genes related to carbon metabolism and lipid metabolisme0
Direction
activatede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Gossypium hirsutum
Gossypium hirsutum · TaxonChriKo · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“the expression of genes related to carbon metabolism and lipid metabolism was activated significantly”

✓ located verbatim in the source · abstract, characters 608–709 · show in text ↑
t0

“Ca2+ deficiency in cotton fibers”

✓ located verbatim in the source · title, characters 112–144 · show in text ↑
Intervention effectobservedoriginal resultmixedmeasured

Claim · model-written summary

All gene members of nine glycolytic enzymes were up-regulated under calcium deficiency.

Treatment
Ca2+ deficiencyt0
Outcome
gene members of 9 key enzymes involving in glycolysise0
Direction
up-regulatede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Gossypium hirsutum
Gossypium hirsutum · TaxonChriKo · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“All gene members of 9 key enzymes involving in glycolysis were up-regulated”

✓ located verbatim in the source · abstract, characters 711–786 · show in text ↑
t0

“Ca2+ deficiency in cotton fibers”

✓ located verbatim in the source · title, characters 112–144 · show in text ↑
Intervention effectobservedoriginal resultnegativesignificant (as stated)measured

Claim · model-written summary

Glucose was significantly reduced in calcium-deficient tissues.

Treatment
Ca2+ deficiencye0
Outcome
glucosee0
Direction
reducede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Gossypium hirsutum
Gossypium hirsutum · TaxonChriKo · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“glucose was significantly reduced in Ca2+ deficiency treated tissues”

✓ located verbatim in the source · abstract, characters 792–860 · show in text ↑
t0

“cotton fibers”

✓ located verbatim in the source · title, characters 131–144 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Low potassium restored glycolysis gene expression following calcium deficiency.

Treatment
low K+e0
Outcome
expression levels of glycolysis genese0
Direction
recoverede0
Comparator
Ca2+ deficiencye0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Gossypium hirsutum
Gossypium hirsutum · TaxonChriKo · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“low K+ recovered the expression levels of glycolysis genes and glucose content caused by Ca2+ deficiency”

✓ located verbatim in the source · abstract, characters 933–1037 · show in text ↑
t0

“cotton fibers”

✓ located verbatim in the source · title, characters 131–144 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Low potassium restored glucose content following calcium deficiency.

Treatment
low K+e0
Outcome
glucose contente0
Direction
recoverede0
Comparator
Ca2+ deficiencye0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Gossypium hirsutum
Gossypium hirsutum · TaxonChriKo · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“low K+ recovered the expression levels of glycolysis genes and glucose content caused by Ca2+ deficiency”

✓ located verbatim in the source · abstract, characters 933–1037 · show in text ↑
t0

“cotton fibers”

✓ located verbatim in the source · title, characters 131–144 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Calcium deficiency decreased fatty acid, diacylglycerol and glycolipid levels.

Treatment
Ca2+ deficiencye0
Outcome
fatty acid (FA), diacylglycerol (DAG) and glycolipide0
Direction
decreasee0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Gossypium hirsutum
Gossypium hirsutum · TaxonChriKo · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Ca2+ deficiency led to the decrease of fatty acid (FA), diacylglycerol (DAG) and glycolipid”

✓ located verbatim in the source · abstract, characters 1194–1285 · show in text ↑
t0

“cotton fibers”

✓ located verbatim in the source · title, characters 131–144 · show in text ↑
Intervention effectobservedoriginal resultmixedsignificant (as stated)measured

Claim · model-written summary

Calcium deficiency significantly increased triacylglycerol.

Treatment
Ca2+ deficiencyt0
Outcome
triacylglycerol (TAG)e0
Direction
increasee0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Gossypium hirsutum
Gossypium hirsutum · TaxonChriKo · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“the significant increase of triacylglycerol (TAG), phospholipid PE (phosphatidylethanolamine), PG (phosphatidylglycerol) and PC (phosphatidylcholine)”

✓ located verbatim in the source · abstract, characters 1291–1440 · show in text ↑
t0

“Ca2+ deficiency in cotton fibers”

✓ located verbatim in the source · title, characters 112–144 · show in text ↑
Intervention effectobservedoriginal resultmixedsignificant (as stated)measured

Claim · model-written summary

Calcium deficiency significantly increased PE, PG and PC phospholipids.

Treatment
Ca2+ deficiencyt0
Outcome
phospholipid PE (phosphatidylethanolamine), PG (phosphatidylglycerol) and PC (phosphatidylcholine)e0
Direction
increasee0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Gossypium hirsutum
Gossypium hirsutum · TaxonChriKo · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“the significant increase of triacylglycerol (TAG), phospholipid PE (phosphatidylethanolamine), PG (phosphatidylglycerol) and PC (phosphatidylcholine)”

✓ located verbatim in the source · abstract, characters 1291–1440 · show in text ↑
t0

“Ca2+ deficiency in cotton fibers”

✓ located verbatim in the source · title, characters 112–144 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Low potassium restored fatty acid, phospholipid and glycolipid contents.

Treatment
Low K+e0
Outcome
contents of FA, phospholipids and glycolipidse0
Direction
restorede0
Comparator
Ca2+ deficiencyt0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Gossypium hirsutum
Gossypium hirsutum · TaxonChriKo · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Low K+ restored the contents of FA, phospholipids and glycolipids”

✓ located verbatim in the source · abstract, characters 1442–1507 · show in text ↑
t0

“Ca2+ deficiency in cotton fibers”

✓ located verbatim in the source · title, characters 112–144 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Low potassium relieved symptoms of calcium deficiency.

Treatment
Low K+e0
Outcome
symptoms caused by Ca2+ deficiencye0
Direction
relievede0
Comparator
Ca2+ deficiencye0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Gossypium hirsutum
Gossypium hirsutum · TaxonChriKo · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Low K+ restored the contents of FA, phospholipids and glycolipids, effectively relieved the symptoms caused by Ca2+ deficiency”

✓ located verbatim in the source · abstract, characters 1442–1568 · show in text ↑
t0

“cotton fibers”

✓ located verbatim in the source · title, characters 131–144 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Low potassium restored fiber cell development.

Treatment
Low K+e0
Outcome
development of fiber cellse0
Direction
recoverede0
Comparator
Ca2+ deficiencye0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Gossypium hirsutum
Gossypium hirsutum · TaxonChriKo · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Low K+ restored the contents of FA, phospholipids and glycolipids, effectively relieved the symptoms caused by Ca2+ deficiency, and recovered the development of fiber cells”

✓ located verbatim in the source · abstract, characters 1442–1614 · show in text ↑
t0

“cotton fibers”

✓ located verbatim in the source · title, characters 131–144 · show in text ↑

calcium(2+) · molecular: metabolites · Gossypium hirsutum (cotton)Positive and negative results

2 papers: 1 positive, 1 negative or no effect

1 in the opposite direction

  1. positive
See all 2 papers →

calcium(2+) · quality: grain · Gossypium hirsutum (cotton)Positive and negative results

3 papers: 1 positive, 2 negative or no effect

1 paper in the same direction as this paper · 1 in the opposite direction

This paper is about lacking the nutrient, so it counts the other way round here.

  1. positive
  2. negative
See all 3 papers →

calcium(2+) · disease · Gossypium hirsutum (cotton)Results agree

2 papers: 2 positive, 0 negative or no effect

1 paper in the same direction as this paper

This paper is about lacking the nutrient, so it counts the other way round here.

  1. positive
See all 2 papers →

potassium · quality: grain · Gossypium hirsutum (cotton)Results differ

57 papers: 44 positive, 13 negative or no effect

43 papers in the same direction as this paper · 12 in the opposite direction · 1 reporting no difference from an alternative

  1. no effect
  2. no effect
  3. no effect

53 papers more in this group

See all 57 papers →

potassium · molecular: expression · Gossypium hirsutum (cotton)Positive and negative results

4 papers: 3 positive, 1 negative or no effect

2 papers in the same direction as this paper · 1 in the opposite direction

  1. negative
  2. positive
  3. positive
See all 4 papers →

potassium · disease · Gossypium hirsutum (cotton)Positive and negative results

5 papers: 4 positive, 1 negative or no effect

3 papers in the same direction as this paper · 1 in the opposite direction

  1. no effect
  2. positive
  3. positive

1 paper more in this group

See all 5 papers →

potassium · molecular: metabolites · Gossypium hirsutum (cotton)Positive and negative results

14 papers: 12 positive, 2 negative or no effect

11 papers in the same direction as this paper · 1 in the opposite direction · 1 reporting no difference from an alternative

  1. negative
  2. no effect
  3. positive

10 papers more in this group

See all 14 papers →

potassium · quality: oil · Gossypium hirsutum (cotton)Results agree

5 papers: 5 positive, 0 negative or no effect

4 papers in the same direction as this paper

  1. positive
  2. positive
  3. positive

1 paper more in this group

See all 5 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.