Paper · 2024 · BMC Plant Biology

Transcriptome analysis of axillary buds in low phosphorus stress and functional analysis of TaWRKY74s in wheat

Xue-zheng Li; Xiao-tong Zhang; Xiao-min Bie; et al.

12
claims
22
verbatim quotes
115
citations
3
research areas
✓
Open access · cc-by

Abstract

BACKGROUND: Wheat is one of the main grain crops in the world, and the tiller number is a key factor affecting the yield of wheat. Phosphorus is an essential element for tiller development in wheat. However, due to decreasing phosphorus content in soil, there has been increasing use of phosphorus fertilizer, while imposing risk of soil and water pollution. Hence, it is important to identify low phosphorus tolerance genes and utilize them for stress resistance breeding in wheat. RESULTS: We subjected the wheat variety Kenong 199 (KN199) to low phosphorus stress and observed a reduced tiller number. Using transcriptome analysis, we identified 1651 upregulated genes and 827 downregulated of genes after low phosphorus stress. The differentially expressed genes were found to be enriched in the enzyme activity regulation related to phosphorus, hormone signal transduction, and ion transmembrane transport. Furthermore, the transcription factor analysis revealed that TaWRKY74s were important for low phosphorus tolerance. TaWRKY74s have three alleles: TaWRKY74-A, TaWRKY74-B, and TaWRKY74-D, and they all belong to the WRKY family with conserved WRKYGQK motifs. These proteins were found to be located in the nucleus, and they were expressed in axillary meristem, shoot apical meristem(SAM), young leaves, leaf primordium, and spikelet primordium. The evolutionary tree showed that TaWRKY74s were closely related to OsWRKY74s in rice. Moreover, TaWRKY74s-RNAi transgenic plants displayed significantly fewer tillers compared to wild-type plants under normal conditions. Additionally, the tiller numebr of the RNAi transgenic plants was also significantly lower than that of the wild-type plants under low-phosphorus stress, and increased the decrease amplitude. This suggestd that TaWRKY74s are related to phosphorus response and can affect the tiller number of wheat. CONCLUSIONS: The results of this research showed that TaWRKY74s were key genes in wheat response to low phosphorus stress, which might regulate wheat tiller number through abscisic acid (ABA) and auxin signal transduction pathways. This research lays the foundation for further investigating the mechanism of TaWRKY74s in the low phosphorus environments and is significant for wheat stress resistance breeding.

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Claims 12

Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Low phosphorus stress reduced tiller number in Kenong 199 wheat.

Material
Kenong 199 (KN199)e0
Treatment
low phosphorus stresse0
Outcome
tiller numbere0
Direction
reducede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“We subjected the wheat variety Kenong 199 (KN199) to low phosphorus stress and observed a reduced tiller number.”

✓ located verbatim in the source · abstract, characters 492–604 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Low phosphorus stress upregulated 1651 genes.

Treatment
low phosphorus stresse0
Outcome
upregulated genese0
Value
1651e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“we identified 1651 upregulated genes and 827 downregulated of genes after low phosphorus stress.”

✓ located verbatim in the source · abstract, characters 635–731 · show in text ↑
t0

“wheat”

✓ located verbatim in the source · title, characters 105–110 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Low phosphorus stress downregulated 827 genes.

Treatment
low phosphorus stresse0
Outcome
downregulated of genese0
Value
827e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“we identified 1651 upregulated genes and 827 downregulated of genes after low phosphorus stress.”

✓ located verbatim in the source · abstract, characters 635–731 · show in text ↑
t0

“wheat”

✓ located verbatim in the source · title, characters 105–110 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Differentially expressed genes were enriched for phosphorus enzyme regulation, hormone signaling and ion transport.

Outcome
enzyme activity regulation related to phosphorus, hormone signal transduction, and ion transmembrane transporte0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“The differentially expressed genes were found to be enriched in the enzyme activity regulation related to phosphorus, hormone signal transduction, and ion transmembrane transport.”

✓ located verbatim in the source · abstract, characters 732–911 · show in text ↑
t0

“wheat”

✓ located verbatim in the source · title, characters 105–110 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

TaWRKY74s were identified as important for low phosphorus tolerance.

Gene
TaWRKY74se0
Outcome
low phosphorus tolerancee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“the transcription factor analysis revealed that TaWRKY74s were important for low phosphorus tolerance.”

✓ located verbatim in the source · abstract, characters 925–1027 · show in text ↑
t0

“wheat”

✓ located verbatim in the source · title, characters 105–110 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

TaWRKY74s have three named alleles with conserved WRKYGQK motifs.

Gene
TaWRKY74se0
Outcome
WRKY family with conserved WRKYGQK motifse0
Value
three allelese0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“TaWRKY74s have three alleles: TaWRKY74-A, TaWRKY74-B, and TaWRKY74-D, and they all belong to the WRKY family with conserved WRKYGQK motifs.”

✓ located verbatim in the source · abstract, characters 1028–1167 · show in text ↑
t0

“wheat”

✓ located verbatim in the source · title, characters 105–110 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

TaWRKY74 proteins were located in the nucleus.

Organ / stage
nucleuse0
Outcome
located in the nucleuse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“These proteins were found to be located in the nucleus, and they were expressed in axillary meristem, shoot apical meristem(SAM), young leaves, leaf primordium, and spikelet primordium.”

✓ located verbatim in the source · abstract, characters 1168–1353 · show in text ↑
t0

“wheat”

✓ located verbatim in the source · title, characters 105–110 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

TaWRKY74 proteins were expressed in five reported wheat tissues.

Outcome
expressed in axillary meristem, shoot apical meristem(SAM), young leaves, leaf primordium, and spikelet primordiume0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“they were expressed in axillary meristem, shoot apical meristem(SAM), young leaves, leaf primordium, and spikelet primordium.”

✓ located verbatim in the source · abstract, characters 1228–1353 · show in text ↑
t0

“wheat”

✓ located verbatim in the source · title, characters 105–110 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

TaWRKY74s were closely related to rice OsWRKY74s.

Gene
TaWRKY74se0
Outcome
closely related to OsWRKY74s in ricee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“The evolutionary tree showed that TaWRKY74s were closely related to OsWRKY74s in rice.”

✓ located verbatim in the source · abstract, characters 1354–1440 · show in text ↑
t0

“wheat”

✓ located verbatim in the source · title, characters 105–110 · show in text ↑
Intervention effectobservedoriginal resultnegativesignificant (as stated)measured

Claim · model-written summary

TaWRKY74s-RNAi plants had significantly fewer tillers than wild type under normal conditions.

Material
TaWRKY74s-RNAi transgenic plantse0
Treatment
TaWRKY74s-RNAie0
Gene
TaWRKY74se0
Outcome
tillerse0
Direction
fewere0
Qualifier
normal conditionse0
Comparator
wild-type plantse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“TaWRKY74s-RNAi transgenic plants displayed significantly fewer tillers compared to wild-type plants under normal conditions.”

✓ located verbatim in the source · abstract, characters 1451–1575 · show in text ↑
t0

“wheat”

✓ located verbatim in the source · title, characters 105–110 · show in text ↑
Intervention effectobservedoriginal resultnegativesignificant (as stated)measured

Claim · model-written summary

TaWRKY74s-RNAi plants had significantly fewer tillers than wild type under low-phosphorus stress.

Material
RNAi transgenic plantse0
Treatment
low-phosphorus stresse0
Outcome
tiller numebre0
Direction
lowere0
Qualifier
increased the decrease amplitudee0
Comparator
wild-type plantse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“the tiller numebr of the RNAi transgenic plants was also significantly lower than that of the wild-type plants under low-phosphorus stress, and increased the decrease amplitude.”

✓ located verbatim in the source · abstract, characters 1590–1767 · show in text ↑
t0

“wheat”

✓ located verbatim in the source · title, characters 105–110 · show in text ↑
Mechanismhypothesisoriginal resultmeasured

Claim · model-written summary

The authors propose TaWRKY74s may regulate tiller number through ABA and auxin signaling.

Gene
TaWRKY74se0
Compound
abscisic acid (ABA) and auxine0
Outcome
wheat tiller numbere0
Qualifier
might regulatee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“TaWRKY74s were key genes in wheat response to low phosphorus stress, which might regulate wheat tiller number through abscisic acid (ABA) and auxin signal transduction pathways.”

✓ located verbatim in the source · abstract, characters 1929–2106 · show in text ↑

phosphorus · yield · Triticum aestivum (wheat)Positive and negative results

572 papers: 524 positive, 48 negative or no effect

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