Paper · 2025 · Agronomy

Biofertilizers Enhance Soil Fertility and Crop Yields Through Microbial Community Modulation

Xu Zhang; Lei Zhang; Junjie Liu; et al.

12
claims
26
verbatim quotes
16
citations
2
research areas
✓
Open access · cc-by

Abstract

Soil microorganisms play critical roles in mediating soil fertility. Exploring the effect of fertilization on soil microbial communities is of great importance to comprehend the sustainability of agriculture. However, the impacts of the application of different fertilization techniques on soil microbial communities remain ambiguous due to inconsistent findings across studies. In this study, we investigated changes in soil microbial communities under different fertilization techniques (chemical fertilizer (CK), organic fertilizer (OF), Bacillus-amended biofertilizer (BF), and Trichoderma-amended biofertilizer (MF)) and analyzed the link between soil fertility improvement and crop yield increase from a microbial perspective. Compared to the CK treatment, the BF and MF treatments increased corn yields by 16.07% and 12.98%, and soybean yields by 17.48% and 15.32%, respectively. BF tends to increase soil available phosphorus, whereas MF demonstrates a more pronounced enhancement in both available phosphorus and NH4+-N contents. These differential effects were primarily linked to changes in the microbial community. Specifically, BF significantly enriched Bacillus, Rhodanobacter, Massilia, Mortierella, and Tetracladium, while the MF selectively increased the abundances of Burkholderia-Caballeronia-Paraburkholderia, Trichoderma, Penicillium, and Sistotrema. Co-occurrence network analysis revealed that biofertilizers enhanced microbial network stability and complexity compared to conventional fertilization techniques. Moreover, structural equation modeling (SEM) confirmed strong and positive relationships between crop yields and the abundances of specific probiotic microorganisms. These findings elucidate the mechanism-specific roles of biofertilizers in agricultural systems and provide novel insights for developing targeted biofertilizer formulations to advance sustainable agricultural practices.

Abstract from the paper’s OpenAlex record; open copy licensed cc-by. Read at the source ↗

The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 12

Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Bacillus-amended biofertilizer increased corn yield by 16.07% versus chemical fertilizer.

Treatment
BFe0
Outcome
corn yieldse0
Direction
increasede0
Value
16.07%e0
Comparator
CK treatmente0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays subsp. mays
Zea mays subsp. mays · TaxonDominicus Johannes Bergsma · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Compared to the CK treatment, the BF and MF treatments increased corn yields by 16.07% and 12.98%”

✓ located verbatim in the source · abstract, characters 733–830 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Trichoderma-amended biofertilizer increased corn yield by 12.98% versus chemical fertilizer.

Treatment
MFe0
Outcome
corn yieldse0
Direction
increasede0
Value
12.98%e0
Comparator
CK treatmente0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays subsp. mays
Zea mays subsp. mays · TaxonDominicus Johannes Bergsma · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Compared to the CK treatment, the BF and MF treatments increased corn yields by 16.07% and 12.98%”

✓ located verbatim in the source · abstract, characters 733–830 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Bacillus-amended biofertilizer increased soybean yield by 17.48% versus chemical fertilizer.

Taxon
soybeanGlycine maxe0
Treatment
Bacillus-amended biofertilizer (BF)e2
Outcome
soybean yieldse0
Direction
increasede1
Value
17.48%e0
Comparator
CK treatmente1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e0

“soybean yields by 17.48% and 15.32%”

✓ located verbatim in the source · abstract, characters 836–871 · show in text ↑
e1

“Compared to the CK treatment, the BF and MF treatments increased corn yields by 16.07% and 12.98%”

✓ located verbatim in the source · abstract, characters 733–830 · show in text ↑
e2

“Bacillus-amended biofertilizer (BF)”

✓ located verbatim in the source · abstract, characters 541–576 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Trichoderma-amended biofertilizer increased soybean yield by 15.32% versus chemical fertilizer.

Taxon
soybeanGlycine maxe0
Treatment
Trichoderma-amended biofertilizer (MF)e2
Outcome
soybean yieldse0
Direction
increasede1
Value
15.32%e0
Comparator
CK treatmente1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e0

“soybean yields by 17.48% and 15.32%”

✓ located verbatim in the source · abstract, characters 836–871 · show in text ↑
e1

“Compared to the CK treatment, the BF and MF treatments increased corn yields by 16.07% and 12.98%”

✓ located verbatim in the source · abstract, characters 733–830 · show in text ↑
e2

“Trichoderma-amended biofertilizer (MF)”

✓ located verbatim in the source · abstract, characters 582–620 · show in text ↑
Intervention effectauthor interpretationoriginal resultmeasured

Claim · model-written summary

BF tended to increase soil available phosphorus.

Treatment
BFe0
Outcome
soil available phosphoruse0
Direction
increasee0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays subsp. mays
Zea mays subsp. mays · TaxonDominicus Johannes Bergsma · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“BF tends to increase soil available phosphorus”

✓ located verbatim in the source · abstract, characters 887–933 · show in text ↑
e1

“corn yields”

✓ located verbatim in the source · abstract, characters 798–809 · show in text ↑
e2

“soybean yields”

✓ located verbatim in the source · abstract, characters 836–850 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

MF enhanced both soil available phosphorus and ammonium nitrogen contents.

Treatment
MFe0
Outcome
available phosphorus and NH4+-N contentse0
Direction
enhancemente0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays subsp. mays
Zea mays subsp. mays · TaxonDominicus Johannes Bergsma · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“MF demonstrates a more pronounced enhancement in both available phosphorus and NH4+-N contents”

✓ located verbatim in the source · abstract, characters 943–1037 · show in text ↑
e1

“corn yields”

✓ located verbatim in the source · abstract, characters 798–809 · show in text ↑
Intervention effectobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

BF significantly enriched Bacillus, Rhodanobacter and Massilia.

Treatment
BFe0
Outcome
Bacillus, Rhodanobacter, Massiliae0
Direction
enrichede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays subsp. mays
Zea mays subsp. mays · TaxonDominicus Johannes Bergsma · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“BF significantly enriched Bacillus, Rhodanobacter, Massilia, Mortierella, and Tetracladium”

✓ located verbatim in the source · abstract, characters 1141–1231 · show in text ↑
e1

“corn yields”

✓ located verbatim in the source · abstract, characters 798–809 · show in text ↑
Intervention effectobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

BF significantly enriched Mortierella and Tetracladium.

Treatment
BFe0
Outcome
Mortierella, and Tetracladiume0
Direction
enrichede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays subsp. mays
Zea mays subsp. mays · TaxonDominicus Johannes Bergsma · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“BF significantly enriched Bacillus, Rhodanobacter, Massilia, Mortierella, and Tetracladium”

✓ located verbatim in the source · abstract, characters 1141–1231 · show in text ↑
e1

“corn yields”

✓ located verbatim in the source · abstract, characters 798–809 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

MF increased Burkholderia-Caballeronia-Paraburkholderia, Trichoderma and Penicillium abundances.

Treatment
MFe0
Outcome
abundances of Burkholderia-Caballeronia-Paraburkholderia, Trichoderma, Penicilliume0
Direction
increasede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays subsp. mays
Zea mays subsp. mays · TaxonDominicus Johannes Bergsma · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“MF selectively increased the abundances of Burkholderia-Caballeronia-Paraburkholderia, Trichoderma, Penicillium, and Sistotrema”

✓ located verbatim in the source · abstract, characters 1243–1370 · show in text ↑
e1

“corn yields”

✓ located verbatim in the source · abstract, characters 798–809 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

MF increased Sistotrema abundance.

Treatment
MFe0
Outcome
Sistotremae0
Direction
increasede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays subsp. mays
Zea mays subsp. mays · TaxonDominicus Johannes Bergsma · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“MF selectively increased the abundances of Burkholderia-Caballeronia-Paraburkholderia, Trichoderma, Penicillium, and Sistotrema”

✓ located verbatim in the source · abstract, characters 1243–1370 · show in text ↑
e1

“corn yields”

✓ located verbatim in the source · abstract, characters 798–809 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Biofertilizers enhanced microbial network stability and complexity versus conventional fertilization.

Treatment
biofertilizerse0
Outcome
microbial network stability and complexitye0
Direction
enhancede0
Comparator
conventional fertilization techniquese0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays subsp. mays
Zea mays subsp. mays · TaxonDominicus Johannes Bergsma · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“biofertilizers enhanced microbial network stability and complexity compared to conventional fertilization techniques”

✓ located verbatim in the source · abstract, characters 1417–1533 · show in text ↑
e1

“corn yields”

✓ located verbatim in the source · abstract, characters 798–809 · show in text ↑
Associationobservedoriginal resultpositivesimulated

Claim · model-written summary

Crop yields were positively associated with abundances of specific probiotic microorganisms in structural equation modeling.

Interactor
specific probiotic microorganismse0symbiont
Outcome
crop yieldse0
Direction
positivee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays subsp. mays
Zea mays subsp. mays · TaxonDominicus Johannes Bergsma · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“structural equation modeling (SEM) confirmed strong and positive relationships between crop yields and the abundances of specific probiotic microorganisms”

✓ located verbatim in the source · abstract, characters 1545–1699 · show in text ↑
e1

“corn yields”

✓ located verbatim in the source · abstract, characters 798–809 · show in text ↑
e2

“soybean yields”

✓ located verbatim in the source · abstract, characters 836–850 · show in text ↑

Trichoderma · yield · Zea mays (maize)Results differ

18 papers: 17 positive, 1 negative or no effect

16 papers in the same direction as this paper · 1 in the opposite direction

  1. no effect
  2. positive
  3. positive

14 papers more in this group

See all 18 papers →

Trichoderma · soil: chemistry · Zea mays (maize)Results agree

3 papers: 3 positive, 0 negative or no effect

2 papers in the same direction as this paper

  1. positive
  2. positive
See all 3 papers →

Trichoderma · yield · Glycine max (soybean)Results agree

21 papers: 21 positive, 0 negative or no effect

20 papers in the same direction as this paper

  1. positive
  2. positive
  3. positive

17 papers more in this group

See all 21 papers →

inoculation · soil: chemistry · Zea mays (maize)Positive and negative results

71 papers: 62 positive, 9 negative or no effect

61 papers in the same direction as this paper · 9 in the opposite direction

  1. negative
  2. no effect
  3. no effect

67 papers more in this group

See all 71 papers →

inoculation · yield · Zea mays (maize)Positive and negative results

538 papers: 479 positive, 59 negative or no effect

478 papers in the same direction as this paper · 52 in the opposite direction · 7 reporting no difference from an alternative

  1. no effect
  2. no effect
  3. negative

534 papers more in this group

See all 538 papers →

inoculation · yield · Glycine max (soybean)Positive and negative results

566 papers: 491 positive, 75 negative or no effect

490 papers in the same direction as this paper · 63 in the opposite direction · 12 reporting no difference from an alternative

  1. no effect
  2. no effect
  3. no effect

562 papers more in this group

See all 566 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.